RNA–Protein interactions for RNA: ENST00000544349.5

VPS33A-209, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 2

Gene VPS33A, Length 2,114 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-209ENST00000544349 FMNL2Q96PY5 1086 aa17.92■□□□□ 0.46
VPS33A-209ENST00000544349 SNRPA1P09661 255 aaKnown RBP17.9■□□□□ 0.46
VPS33A-209ENST00000544349 PROSER3Q2NL68 480 aa17.9■□□□□ 0.46
VPS33A-209ENST00000544349 WNK3Q9BYP7 1800 aa17.9■□□□□ 0.46
VPS33A-209ENST00000544349 ATP10DQ9P241 1426 aa17.9■□□□□ 0.46
VPS33A-209ENST00000544349 RPAP2Q8IXW5 612 aaPredicted RBP17.9■□□□□ 0.46
VPS33A-209ENST00000544349 DDX21Q9NR30 783 aaKnown RBP eCLIP17.9■□□□□ 0.46
VPS33A-209ENST00000544349 HYPKQ9NX55 129 aa17.9■□□□□ 0.46
VPS33A-209ENST00000544349 TOGARAM1Q9Y4F4 1720 aa17.89■□□□□ 0.46
VPS33A-209ENST00000544349 PDIA6Q15084 440 aa17.89■□□□□ 0.45
VPS33A-209ENST00000544349 ANKRD44Q8N8A2 993 aa17.89■□□□□ 0.45
VPS33A-209ENST00000544349 GCC1Q96CN9 775 aa17.89■□□□□ 0.45
VPS33A-209ENST00000544349 PI4KAP2A4QPH2 592 aa17.89■□□□□ 0.45
VPS33A-209ENST00000544349 PI4KAP1Q8N8J0 262 aa17.89■□□□□ 0.45
VPS33A-209ENST00000544349 DAXXQ9UER7 740 aaPredicted RBP17.89■□□□□ 0.45
VPS33A-209ENST00000544349 NWD2Q9ULI1 1742 aa17.89■□□□□ 0.45
VPS33A-209ENST00000544349 SPATA31A1Q5TZJ5 1347 aa17.88■□□□□ 0.45
VPS33A-209ENST00000544349 CEP85Q6P2H3 762 aa17.88■□□□□ 0.45
VPS33A-209ENST00000544349 DNAAF4Q8WXU2 420 aa17.88■□□□□ 0.45
VPS33A-209ENST00000544349 PAPPAQ13219 1627 aa17.88■□□□□ 0.45
VPS33A-209ENST00000544349 SLIT2O94813 1529 aa17.88■□□□□ 0.45
VPS33A-209ENST00000544349 UBR2Q8IWV8 1755 aa17.88■□□□□ 0.45
VPS33A-209ENST00000544349 ADCY9O60503 1353 aa17.88■□□□□ 0.45
VPS33A-209ENST00000544349 GLI3P10071 1580 aa17.87■□□□□ 0.45
VPS33A-209ENST00000544349 THRAP3Q9Y2W1 955 aaKnown RBP17.87■□□□□ 0.45
VPS33A-209ENST00000544349 USP16Q9Y5T5 823 aa17.87■□□□□ 0.45
VPS33A-209ENST00000544349 JCADQ9P266 1359 aa17.87■□□□□ 0.45
VPS33A-209ENST00000544349 EXOC5O00471 708 aa17.87■□□□□ 0.45
VPS33A-209ENST00000544349 GNAI3P08754 354 aa17.87■□□□□ 0.45
VPS33A-209ENST00000544349 NUCB1Q02818 461 aa17.87■□□□□ 0.45
VPS33A-209ENST00000544349 NFKBIBQ15653 356 aa17.86■□□□□ 0.45
VPS33A-209ENST00000544349 CDCA7Q9BWT1 371 aaPredicted RBP17.86■□□□□ 0.45
VPS33A-209ENST00000544349 SRCIN1Q9C0H9 1055 aa17.86■□□□□ 0.45
VPS33A-209ENST00000544349 GNAI2P04899 355 aa17.86■□□□□ 0.45
VPS33A-209ENST00000544349 BEND3Q5T5X7 828 aa17.86■□□□□ 0.45
VPS33A-209ENST00000544349 LAMB4A4D0S4 1761 aa17.86■□□□□ 0.45
VPS33A-209ENST00000544349 KSR2Q6VAB6 950 aa17.85■□□□□ 0.45
VPS33A-209ENST00000544349 USP44Q9H0E7 712 aa17.85■□□□□ 0.45
VPS33A-209ENST00000544349 KCPQ6ZWJ8 1503 aa17.85■□□□□ 0.45
VPS33A-209ENST00000544349 DCTPP1Q9H773 170 aa17.84■□□□□ 0.45
VPS33A-209ENST00000544349 TMOD3Q9NYL9 352 aa17.84■□□□□ 0.45
VPS33A-209ENST00000544349 SPATA31A5Q5VU36 1347 aa17.84■□□□□ 0.45
VPS33A-209ENST00000544349 SPATA31A7Q8IWB4 1347 aa17.84■□□□□ 0.45
VPS33A-209ENST00000544349 TNS2Q63HR2 1409 aa17.84■□□□□ 0.45
VPS33A-209ENST00000544349 CHD1LQ86WJ1 897 aa17.84■□□□□ 0.45
VPS33A-209ENST00000544349 MAP3K2Q9Y2U5 619 aa17.84■□□□□ 0.45
VPS33A-209ENST00000544349 DDX58O95786 925 aaKnown RBP17.83■□□□□ 0.45
VPS33A-209ENST00000544349 ITGB4P16144 1822 aa17.83■□□□□ 0.45
VPS33A-209ENST00000544349 MYL6BP14649 208 aa17.83■□□□□ 0.44
VPS33A-209ENST00000544349 ANKRD45Q5TZF3 282 aa17.83■□□□□ 0.44
VPS33A-209ENST00000544349 LRP10Q7Z4F1 713 aa17.83■□□□□ 0.44
VPS33A-209ENST00000544349 TBC1D32Q96NH3 1257 aa17.83■□□□□ 0.44
VPS33A-209ENST00000544349 LRP6O75581 1613 aa17.82■□□□□ 0.44
VPS33A-209ENST00000544349 AIMP1Q12904 312 aaKnown RBP17.82■□□□□ 0.44
VPS33A-209ENST00000544349 PIGBQ92521 554 aa17.81■□□□□ 0.44
VPS33A-209ENST00000544349 LNPKQ9C0E8 428 aa17.81■□□□□ 0.44
VPS33A-209ENST00000544349 HMMRO75330 724 aa17.81■□□□□ 0.44
VPS33A-209ENST00000544349 UBTFL1P0CB47 393 aaPredicted RBP17.81■□□□□ 0.44
VPS33A-209ENST00000544349 UNC5CLQ8IV45 518 aa17.81■□□□□ 0.44
VPS33A-209ENST00000544349 PTCD1O75127 700 aaKnown RBP17.8■□□□□ 0.44
VPS33A-209ENST00000544349 ALDH1L1O75891 902 aa17.8■□□□□ 0.44
VPS33A-209ENST00000544349 BARGINQ6ZT62 677 aa17.8■□□□□ 0.44
VPS33A-209ENST00000544349 COPS6Q7L5N1 327 aa17.8■□□□□ 0.44
VPS33A-209ENST00000544349 XAGE3Q8WTP9 111 aa17.8■□□□□ 0.44
VPS33A-209ENST00000544349 ERBB4Q15303 1308 aa17.8■□□□□ 0.44
VPS33A-209ENST00000544349 DDB1Q16531 1140 aa17.8■□□□□ 0.44
VPS33A-209ENST00000544349 CCDC9Q9Y3X0 531 aaKnown RBP17.8■□□□□ 0.44
VPS33A-209ENST00000544349 LRRFIP2Q9Y608 721 aaKnown RBP17.8■□□□□ 0.44
VPS33A-209ENST00000544349 ATP8B2P98198 1209 aa17.79■□□□□ 0.44
VPS33A-209ENST00000544349 NGLY1Q96IV0 654 aa17.79■□□□□ 0.44
VPS33A-209ENST00000544349 C8orf37Q96NL8 207 aa17.79■□□□□ 0.44
VPS33A-209ENST00000544349 SPATA31A6Q5VVP1 1343 aa17.79■□□□□ 0.44
VPS33A-209ENST00000544349 PIP4K2AP48426 406 aaPredicted RBP17.78■□□□□ 0.44
VPS33A-209ENST00000544349 RIC3Q7Z5B4 369 aa17.78■□□□□ 0.44
VPS33A-209ENST00000544349 ASAP1Q9ULH1 1129 aa17.78■□□□□ 0.44
VPS33A-209ENST00000544349 BCL9O00512 1426 aa17.78■□□□□ 0.44
VPS33A-209ENST00000544349 NBPF7P0C2Y1 421 aaPredicted RBP17.78■□□□□ 0.44
VPS33A-209ENST00000544349 LINS1Q8NG48 757 aa17.78■□□□□ 0.44
VPS33A-209ENST00000544349 ATG3Q9NT62 314 aa17.78■□□□□ 0.44
VPS33A-209ENST00000544349 BCL9LQ86UU0 1499 aa17.77■□□□□ 0.44
VPS33A-209ENST00000544349 NBPF26B4DH59 902 aa17.77■□□□□ 0.43
VPS33A-209ENST00000544349 FRAT2O75474 233 aaPredicted RBP17.77■□□□□ 0.43
VPS33A-209ENST00000544349 NBPF14Q5TI25 921 aa17.77■□□□□ 0.43
VPS33A-209ENST00000544349 NBPF10Q6P3W6 841 aaKnown RBP17.77■□□□□ 0.43
VPS33A-209ENST00000544349 ANKRD13DQ6ZTN6 518 aa17.77■□□□□ 0.43
VPS33A-209ENST00000544349 FNBP4Q8N3X1 1017 aaPredicted RBP17.77■□□□□ 0.43
VPS33A-209ENST00000544349 NBPF15Q8N660 670 aa17.77■□□□□ 0.43
VPS33A-209ENST00000544349 KAT6BQ8WYB5 2073 aa17.76■□□□□ 0.43
VPS33A-209ENST00000544349 PNMA6EA0A0J9YXQ4 647 aa17.76■□□□□ 0.43
VPS33A-209ENST00000544349 VPS72Q15906 364 aa17.76■□□□□ 0.43
VPS33A-209ENST00000544349 CWF19L2Q2TBE0 894 aaKnown RBP17.76■□□□□ 0.43
VPS33A-209ENST00000544349 UPF2Q9HAU5 1272 aaKnown RBP17.76■□□□□ 0.43
VPS33A-209ENST00000544349 VSIG10Q8N0Z9 540 aa17.75■□□□□ 0.43
VPS33A-209ENST00000544349 METTL22Q9BUU2 404 aaPredicted RBP17.75■□□□□ 0.43
VPS33A-209ENST00000544349 MFAP1P55081 439 aaKnown RBP17.75■□□□□ 0.43
VPS33A-209ENST00000544349 DOT1LQ8TEK3 1739 aa17.75■□□□□ 0.43
VPS33A-209ENST00000544349 C9orf78Q9NZ63 289 aaPredicted RBP17.75■□□□□ 0.43
VPS33A-209ENST00000544349 A1BGP04217 495 aa17.74■□□□□ 0.43
VPS33A-209ENST00000544349 MARCH10Q8NA82 808 aaPredicted RBP17.74■□□□□ 0.43
VPS33A-209ENST00000544349 TEX13AQ9BXU3 409 aaPredicted RBP17.74■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms