RNA–Protein interactions for RNA: ENST00000543449.1

NPIPB4-217, Transcript of nuclear pore complex interacting protein family member B4, human

TSL 3

Gene NPIPB4, Length 685 nt, Biotype processed transcript.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NPIPB4-217	ENST00000543449	UBR2	Q8IWV8	1755 aa		13.56	□□□□□ -0.24
NPIPB4-217	ENST00000543449	SNRPA1	P09661	255 aa	Known RBP	13.56	□□□□□ -0.24
NPIPB4-217	ENST00000543449	MCM10	Q7L590	875 aa		13.56	□□□□□ -0.24
NPIPB4-217	ENST00000543449	PRKRIP1	Q9H875	184 aa	Predicted RBP	13.56	□□□□□ -0.24
NPIPB4-217	ENST00000543449	COL15A1	P39059	1388 aa		13.56	□□□□□ -0.24
NPIPB4-217	ENST00000543449	TGFB2	P61812	414 aa		13.55	□□□□□ -0.24
NPIPB4-217	ENST00000543449	SMIM5	Q71RC9	77 aa		13.55	□□□□□ -0.24
NPIPB4-217	ENST00000543449	NARF	Q9UHQ1	456 aa		13.55	□□□□□ -0.24
NPIPB4-217	ENST00000543449	SIPA1L3	O60292	1781 aa	Predicted RBP	13.55	□□□□□ -0.24
NPIPB4-217	ENST00000543449	IL6ST	P40189	918 aa	Predicted RBP	13.54	□□□□□ -0.24
NPIPB4-217	ENST00000543449	PELP1	Q8IZL8	1130 aa	Known RBP	13.54	□□□□□ -0.24
NPIPB4-217	ENST00000543449	NLGN2	Q8NFZ4	835 aa		13.54	□□□□□ -0.24
NPIPB4-217	ENST00000543449	BABAM1	Q9NWV8	329 aa		13.54	□□□□□ -0.24
NPIPB4-217	ENST00000543449	ZBTB1	Q9Y2K1	713 aa		13.54	□□□□□ -0.24
NPIPB4-217	ENST00000543449	MYH14	Q7Z406	1995 aa	Known RBP	13.53	□□□□□ -0.24
NPIPB4-217	ENST00000543449	ZNF316	A6NFI3	1004 aa	Predicted RBP	13.53	□□□□□ -0.24
NPIPB4-217	ENST00000543449	CANX	P27824	592 aa	Known RBP	13.53	□□□□□ -0.24
NPIPB4-217	ENST00000543449	EIF5	P55010	431 aa	Known RBP	13.53	□□□□□ -0.24
NPIPB4-217	ENST00000543449	USPL1	Q5W0Q7	1092 aa		13.52	□□□□□ -0.25
NPIPB4-217	ENST00000543449	RUNDC1	Q96C34	613 aa		13.52	□□□□□ -0.25
NPIPB4-217	ENST00000543449	RGL2	O15211	777 aa		13.51	□□□□□ -0.25
NPIPB4-217	ENST00000543449	RIPK4	P57078	832 aa		13.51	□□□□□ -0.25
NPIPB4-217	ENST00000543449	DCTN1	Q14203	1278 aa		13.51	□□□□□ -0.25
NPIPB4-217	ENST00000543449	FKBP8	Q14318	412 aa		13.51	□□□□□ -0.25
NPIPB4-217	ENST00000543449	SRP68	Q9UHB9	627 aa	Known RBP	13.51	□□□□□ -0.25
NPIPB4-217	ENST00000543449	C4A	P0C0L4	1744 aa		13.5	□□□□□ -0.25
NPIPB4-217	ENST00000543449	C10orf71	Q711Q0	1435 aa		13.5	□□□□□ -0.25
NPIPB4-217	ENST00000543449	TM4SF1	P30408	202 aa		13.5	□□□□□ -0.25
NPIPB4-217	ENST00000543449	TMPO	P42166	694 aa	Known RBP	13.5	□□□□□ -0.25
NPIPB4-217	ENST00000543449	KCNQ3	O43525	872 aa		13.49	□□□□□ -0.25
NPIPB4-217	ENST00000543449	PDZRN3	Q9UPQ7	1066 aa		13.49	□□□□□ -0.25
NPIPB4-217	ENST00000543449	ZNF652	Q9Y2D9	606 aa		13.49	□□□□□ -0.25
NPIPB4-217	ENST00000543449	POLRMT	O00411	1230 aa	Known RBP	13.48	□□□□□ -0.25
NPIPB4-217	ENST00000543449	CLEC4G	Q6UXB4	293 aa		13.48	□□□□□ -0.25
NPIPB4-217	ENST00000543449	ZNF330	Q9Y3S2	320 aa	Predicted RBP	13.48	□□□□□ -0.25
NPIPB4-217	ENST00000543449	USP16	Q9Y5T5	823 aa		13.48	□□□□□ -0.25
NPIPB4-217	ENST00000543449	ERBB4	Q15303	1308 aa		13.47	□□□□□ -0.25
NPIPB4-217	ENST00000543449	ANP32C	O43423	234 aa		13.47	□□□□□ -0.25
NPIPB4-217	ENST00000543449	A1BG	P04217	495 aa		13.47	□□□□□ -0.25
NPIPB4-217	ENST00000543449	CALD1	Q05682	793 aa	Known RBP	13.47	□□□□□ -0.25
NPIPB4-217	ENST00000543449	NFIX	Q14938	502 aa		13.47	□□□□□ -0.25
NPIPB4-217	ENST00000543449	DZIP3	Q86Y13	1208 aa	Known RBP	13.47	□□□□□ -0.25
NPIPB4-217	ENST00000543449	TSPYL4	Q9UJ04	414 aa		13.47	□□□□□ -0.25
NPIPB4-217	ENST00000543449	ADAMTS8	Q9UP79	889 aa		13.47	□□□□□ -0.25
NPIPB4-217	ENST00000543449	KIF13B	Q9NQT8	1826 aa		13.46	□□□□□ -0.25
NPIPB4-217	ENST00000543449	YBX3	P16989	372 aa	Known RBP eCLIP	13.46	□□□□□ -0.25
NPIPB4-217	ENST00000543449	EIF4A1	P60842	406 aa	Known RBP	13.46	□□□□□ -0.25
NPIPB4-217	ENST00000543449	DDR1	Q08345	913 aa		13.46	□□□□□ -0.25
NPIPB4-217	ENST00000543449	PXDNL	A1KZ92	1463 aa		13.46	□□□□□ -0.25
NPIPB4-217	ENST00000543449	CHD4	Q14839	1912 aa		13.45	□□□□□ -0.26
NPIPB4-217	ENST00000543449	DLG5	Q8TDM6	1919 aa		13.45	□□□□□ -0.26
NPIPB4-217	ENST00000543449	GIGYF1	O75420	1035 aa	Predicted RBP	13.45	□□□□□ -0.26
NPIPB4-217	ENST00000543449	SERPINB2	P05120	415 aa		13.45	□□□□□ -0.26
NPIPB4-217	ENST00000543449	SETDB2	Q96T68	719 aa		13.45	□□□□□ -0.26
NPIPB4-217	ENST00000543449	BCL2L12	Q9HB09	334 aa		13.45	□□□□□ -0.26
NPIPB4-217	ENST00000543449	PIM2	Q9P1W9	311 aa		13.45	□□□□□ -0.26
NPIPB4-217	ENST00000543449	CARMIL3	Q8ND23	1372 aa		13.45	□□□□□ -0.26
NPIPB4-217	ENST00000543449	NPHP1	O15259	732 aa		13.44	□□□□□ -0.26
NPIPB4-217	ENST00000543449	CAMTA2	O94983	1202 aa		13.44	□□□□□ -0.26
NPIPB4-217	ENST00000543449	CCDC146	Q8IYE0	955 aa		13.44	□□□□□ -0.26
NPIPB4-217	ENST00000543449	MIS18A	Q9NYP9	233 aa		13.44	□□□□□ -0.26
NPIPB4-217	ENST00000543449	TBC1D2B	Q9UPU7	963 aa		13.44	□□□□□ -0.26
NPIPB4-217	ENST00000543449	KDM3B	Q7LBC6	1761 aa		13.43	□□□□□ -0.26
NPIPB4-217	ENST00000543449		A0A0G2JLW4	131 aa		13.43	□□□□□ -0.26
NPIPB4-217	ENST00000543449	DPEP1	P16444	411 aa		13.43	□□□□□ -0.26
NPIPB4-217	ENST00000543449	NEUROD2	Q15784	382 aa		13.43	□□□□□ -0.26
NPIPB4-217	ENST00000543449	THUMPD2	Q9BTF0	503 aa	Known RBP	13.43	□□□□□ -0.26
NPIPB4-217	ENST00000543449	CHMP4A	Q9BY43	222 aa		13.43	□□□□□ -0.26
NPIPB4-217	ENST00000543449	PDE6B	P35913	854 aa		13.42	□□□□□ -0.26
NPIPB4-217	ENST00000543449	ST5	P78524	1137 aa		13.42	□□□□□ -0.26
NPIPB4-217	ENST00000543449	DALRD3	Q5D0E6	543 aa	Known RBP	13.42	□□□□□ -0.26
NPIPB4-217	ENST00000543449	BICDL1	Q6ZP65	573 aa		13.42	□□□□□ -0.26
NPIPB4-217	ENST00000543449	BCS1L	Q9Y276	419 aa		13.42	□□□□□ -0.26
NPIPB4-217	ENST00000543449	SCN7A	Q01118	1682 aa		13.42	□□□□□ -0.26
NPIPB4-217	ENST00000543449	LAMB4	A4D0S4	1761 aa		13.41	□□□□□ -0.26
NPIPB4-217	ENST00000543449	PRAMEF22	A3QJZ6	481 aa		13.41	□□□□□ -0.26
NPIPB4-217	ENST00000543449	ERVV-1	B6SEH8	477 aa		13.41	□□□□□ -0.26
NPIPB4-217	ENST00000543449	CHL1	O00533	1208 aa		13.41	□□□□□ -0.26
NPIPB4-217	ENST00000543449	HOXB7	P09629	217 aa		13.41	□□□□□ -0.26
NPIPB4-217	ENST00000543449	TBC1D9B	Q66K14	1250 aa		13.41	□□□□□ -0.26
NPIPB4-217	ENST00000543449	KIF6	Q6ZMV9	814 aa		13.41	□□□□□ -0.26
NPIPB4-217	ENST00000543449	ZNF784	Q8NCA9	323 aa	Predicted RBP	13.41	□□□□□ -0.26
NPIPB4-217	ENST00000543449	BRIP1	Q9BX63	1249 aa		13.41	□□□□□ -0.26
NPIPB4-217	ENST00000543449	NRXN2	Q9P2S2	1712 aa		13.4	□□□□□ -0.26
NPIPB4-217	ENST00000543449	NBPF26	B4DH59	902 aa		13.4	□□□□□ -0.26
NPIPB4-217	ENST00000543449		H0YIN7	160 aa		13.4	□□□□□ -0.26
NPIPB4-217	ENST00000543449	NCBP3	Q53F19	620 aa	Known RBP	13.4	□□□□□ -0.26
NPIPB4-217	ENST00000543449	NBPF10	Q6P3W6	841 aa	Known RBP	13.4	□□□□□ -0.26
NPIPB4-217	ENST00000543449	NBPF15	Q8N660	670 aa		13.4	□□□□□ -0.26
NPIPB4-217	ENST00000543449	CNBD1	Q8NA66	436 aa		13.4	□□□□□ -0.26
NPIPB4-217	ENST00000543449	CFAP44	Q96MT7	982 aa		13.4	□□□□□ -0.26
NPIPB4-217	ENST00000543449	TRIM35	Q9UPQ4	493 aa		13.4	□□□□□ -0.26
NPIPB4-217	ENST00000543449	RRP7A	Q9Y3A4	280 aa	Known RBP	13.4	□□□□□ -0.26
NPIPB4-217	ENST00000543449	TPTE2	Q6XPS3	522 aa		13.39	□□□□□ -0.27
NPIPB4-217	ENST00000543449	APAF1	O14727	1248 aa		13.38	□□□□□ -0.27
NPIPB4-217	ENST00000543449	KCNA3	P22001	575 aa		13.38	□□□□□ -0.27
NPIPB4-217	ENST00000543449	GNAI1	P63096	354 aa		13.38	□□□□□ -0.27
NPIPB4-217	ENST00000543449	PRR5L	Q6MZQ0	368 aa		13.38	□□□□□ -0.27
NPIPB4-217	ENST00000543449	NBPF5P	Q86XG9	351 aa	Predicted RBP	13.38	□□□□□ -0.27
NPIPB4-217	ENST00000543449	C2CD5	Q86YS7	1000 aa		13.38	□□□□□ -0.27

Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms