RNA–Protein interactions for RNA: ENST00000543368.1

NPIPB3-212, Transcript of nuclear pore complex interacting protein family member B3, humanhuman

TSL 3

Gene NPIPB3, Length 685 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPIPB3-212ENST00000543368 UBR2Q8IWV8 1755 aa13.56□□□□□ -0.24
NPIPB3-212ENST00000543368 SNRPA1P09661 255 aaKnown RBP13.56□□□□□ -0.24
NPIPB3-212ENST00000543368 MCM10Q7L590 875 aa13.56□□□□□ -0.24
NPIPB3-212ENST00000543368 PRKRIP1Q9H875 184 aaPredicted RBP13.56□□□□□ -0.24
NPIPB3-212ENST00000543368 COL15A1P39059 1388 aa13.56□□□□□ -0.24
NPIPB3-212ENST00000543368 TGFB2P61812 414 aa13.55□□□□□ -0.24
NPIPB3-212ENST00000543368 SMIM5Q71RC9 77 aa13.55□□□□□ -0.24
NPIPB3-212ENST00000543368 NARFQ9UHQ1 456 aa13.55□□□□□ -0.24
NPIPB3-212ENST00000543368 SIPA1L3O60292 1781 aaPredicted RBP13.55□□□□□ -0.24
NPIPB3-212ENST00000543368 IL6STP40189 918 aaPredicted RBP13.54□□□□□ -0.24
NPIPB3-212ENST00000543368 PELP1Q8IZL8 1130 aaKnown RBP13.54□□□□□ -0.24
NPIPB3-212ENST00000543368 NLGN2Q8NFZ4 835 aa13.54□□□□□ -0.24
NPIPB3-212ENST00000543368 BABAM1Q9NWV8 329 aa13.54□□□□□ -0.24
NPIPB3-212ENST00000543368 ZBTB1Q9Y2K1 713 aa13.54□□□□□ -0.24
NPIPB3-212ENST00000543368 MYH14Q7Z406 1995 aaKnown RBP13.53□□□□□ -0.24
NPIPB3-212ENST00000543368 ZNF316A6NFI3 1004 aaPredicted RBP13.53□□□□□ -0.24
NPIPB3-212ENST00000543368 CANXP27824 592 aaKnown RBP13.53□□□□□ -0.24
NPIPB3-212ENST00000543368 EIF5P55010 431 aaKnown RBP13.53□□□□□ -0.24
NPIPB3-212ENST00000543368 USPL1Q5W0Q7 1092 aa13.52□□□□□ -0.25
NPIPB3-212ENST00000543368 RUNDC1Q96C34 613 aa13.52□□□□□ -0.25
NPIPB3-212ENST00000543368 RGL2O15211 777 aa13.51□□□□□ -0.25
NPIPB3-212ENST00000543368 RIPK4P57078 832 aa13.51□□□□□ -0.25
NPIPB3-212ENST00000543368 DCTN1Q14203 1278 aa13.51□□□□□ -0.25
NPIPB3-212ENST00000543368 FKBP8Q14318 412 aa13.51□□□□□ -0.25
NPIPB3-212ENST00000543368 SRP68Q9UHB9 627 aaKnown RBP13.51□□□□□ -0.25
NPIPB3-212ENST00000543368 C4AP0C0L4 1744 aa13.5□□□□□ -0.25
NPIPB3-212ENST00000543368 C10orf71Q711Q0 1435 aa13.5□□□□□ -0.25
NPIPB3-212ENST00000543368 TM4SF1P30408 202 aa13.5□□□□□ -0.25
NPIPB3-212ENST00000543368 TMPOP42166 694 aaKnown RBP13.5□□□□□ -0.25
NPIPB3-212ENST00000543368 KCNQ3O43525 872 aa13.49□□□□□ -0.25
NPIPB3-212ENST00000543368 PDZRN3Q9UPQ7 1066 aa13.49□□□□□ -0.25
NPIPB3-212ENST00000543368 ZNF652Q9Y2D9 606 aa13.49□□□□□ -0.25
NPIPB3-212ENST00000543368 POLRMTO00411 1230 aaKnown RBP13.48□□□□□ -0.25
NPIPB3-212ENST00000543368 CLEC4GQ6UXB4 293 aa13.48□□□□□ -0.25
NPIPB3-212ENST00000543368 ZNF330Q9Y3S2 320 aaPredicted RBP13.48□□□□□ -0.25
NPIPB3-212ENST00000543368 USP16Q9Y5T5 823 aa13.48□□□□□ -0.25
NPIPB3-212ENST00000543368 ERBB4Q15303 1308 aa13.47□□□□□ -0.25
NPIPB3-212ENST00000543368 ANP32CO43423 234 aa13.47□□□□□ -0.25
NPIPB3-212ENST00000543368 A1BGP04217 495 aa13.47□□□□□ -0.25
NPIPB3-212ENST00000543368 CALD1Q05682 793 aaKnown RBP13.47□□□□□ -0.25
NPIPB3-212ENST00000543368 NFIXQ14938 502 aa13.47□□□□□ -0.25
NPIPB3-212ENST00000543368 DZIP3Q86Y13 1208 aaKnown RBP13.47□□□□□ -0.25
NPIPB3-212ENST00000543368 TSPYL4Q9UJ04 414 aa13.47□□□□□ -0.25
NPIPB3-212ENST00000543368 ADAMTS8Q9UP79 889 aa13.47□□□□□ -0.25
NPIPB3-212ENST00000543368 KIF13BQ9NQT8 1826 aa13.46□□□□□ -0.25
NPIPB3-212ENST00000543368 YBX3P16989 372 aaKnown RBP eCLIP13.46□□□□□ -0.25
NPIPB3-212ENST00000543368 EIF4A1P60842 406 aaKnown RBP13.46□□□□□ -0.25
NPIPB3-212ENST00000543368 DDR1Q08345 913 aa13.46□□□□□ -0.25
NPIPB3-212ENST00000543368 PXDNLA1KZ92 1463 aa13.46□□□□□ -0.25
NPIPB3-212ENST00000543368 CHD4Q14839 1912 aa13.45□□□□□ -0.26
NPIPB3-212ENST00000543368 DLG5Q8TDM6 1919 aa13.45□□□□□ -0.26
NPIPB3-212ENST00000543368 GIGYF1O75420 1035 aaPredicted RBP13.45□□□□□ -0.26
NPIPB3-212ENST00000543368 SERPINB2P05120 415 aa13.45□□□□□ -0.26
NPIPB3-212ENST00000543368 SETDB2Q96T68 719 aa13.45□□□□□ -0.26
NPIPB3-212ENST00000543368 BCL2L12Q9HB09 334 aa13.45□□□□□ -0.26
NPIPB3-212ENST00000543368 PIM2Q9P1W9 311 aa13.45□□□□□ -0.26
NPIPB3-212ENST00000543368 CARMIL3Q8ND23 1372 aa13.45□□□□□ -0.26
NPIPB3-212ENST00000543368 NPHP1O15259 732 aa13.44□□□□□ -0.26
NPIPB3-212ENST00000543368 CAMTA2O94983 1202 aa13.44□□□□□ -0.26
NPIPB3-212ENST00000543368 CCDC146Q8IYE0 955 aa13.44□□□□□ -0.26
NPIPB3-212ENST00000543368 MIS18AQ9NYP9 233 aa13.44□□□□□ -0.26
NPIPB3-212ENST00000543368 TBC1D2BQ9UPU7 963 aa13.44□□□□□ -0.26
NPIPB3-212ENST00000543368 KDM3BQ7LBC6 1761 aa13.43□□□□□ -0.26
NPIPB3-212ENST00000543368 A0A0G2JLW4 131 aa13.43□□□□□ -0.26
NPIPB3-212ENST00000543368 DPEP1P16444 411 aa13.43□□□□□ -0.26
NPIPB3-212ENST00000543368 NEUROD2Q15784 382 aa13.43□□□□□ -0.26
NPIPB3-212ENST00000543368 THUMPD2Q9BTF0 503 aaKnown RBP13.43□□□□□ -0.26
NPIPB3-212ENST00000543368 CHMP4AQ9BY43 222 aa13.43□□□□□ -0.26
NPIPB3-212ENST00000543368 PDE6BP35913 854 aa13.42□□□□□ -0.26
NPIPB3-212ENST00000543368 ST5P78524 1137 aa13.42□□□□□ -0.26
NPIPB3-212ENST00000543368 DALRD3Q5D0E6 543 aaKnown RBP13.42□□□□□ -0.26
NPIPB3-212ENST00000543368 BICDL1Q6ZP65 573 aa13.42□□□□□ -0.26
NPIPB3-212ENST00000543368 BCS1LQ9Y276 419 aa13.42□□□□□ -0.26
NPIPB3-212ENST00000543368 SCN7AQ01118 1682 aa13.42□□□□□ -0.26
NPIPB3-212ENST00000543368 LAMB4A4D0S4 1761 aa13.41□□□□□ -0.26
NPIPB3-212ENST00000543368 PRAMEF22A3QJZ6 481 aa13.41□□□□□ -0.26
NPIPB3-212ENST00000543368 ERVV-1B6SEH8 477 aa13.41□□□□□ -0.26
NPIPB3-212ENST00000543368 CHL1O00533 1208 aa13.41□□□□□ -0.26
NPIPB3-212ENST00000543368 HOXB7P09629 217 aa13.41□□□□□ -0.26
NPIPB3-212ENST00000543368 TBC1D9BQ66K14 1250 aa13.41□□□□□ -0.26
NPIPB3-212ENST00000543368 KIF6Q6ZMV9 814 aa13.41□□□□□ -0.26
NPIPB3-212ENST00000543368 ZNF784Q8NCA9 323 aaPredicted RBP13.41□□□□□ -0.26
NPIPB3-212ENST00000543368 BRIP1Q9BX63 1249 aa13.41□□□□□ -0.26
NPIPB3-212ENST00000543368 NRXN2Q9P2S2 1712 aa13.4□□□□□ -0.26
NPIPB3-212ENST00000543368 NBPF26B4DH59 902 aa13.4□□□□□ -0.26
NPIPB3-212ENST00000543368 H0YIN7 160 aa13.4□□□□□ -0.26
NPIPB3-212ENST00000543368 NCBP3Q53F19 620 aaKnown RBP13.4□□□□□ -0.26
NPIPB3-212ENST00000543368 NBPF10Q6P3W6 841 aaKnown RBP13.4□□□□□ -0.26
NPIPB3-212ENST00000543368 NBPF15Q8N660 670 aa13.4□□□□□ -0.26
NPIPB3-212ENST00000543368 CNBD1Q8NA66 436 aa13.4□□□□□ -0.26
NPIPB3-212ENST00000543368 CFAP44Q96MT7 982 aa13.4□□□□□ -0.26
NPIPB3-212ENST00000543368 TRIM35Q9UPQ4 493 aa13.4□□□□□ -0.26
NPIPB3-212ENST00000543368 RRP7AQ9Y3A4 280 aaKnown RBP13.4□□□□□ -0.26
NPIPB3-212ENST00000543368 TPTE2Q6XPS3 522 aa13.39□□□□□ -0.27
NPIPB3-212ENST00000543368 APAF1O14727 1248 aa13.38□□□□□ -0.27
NPIPB3-212ENST00000543368 KCNA3P22001 575 aa13.38□□□□□ -0.27
NPIPB3-212ENST00000543368 GNAI1P63096 354 aa13.38□□□□□ -0.27
NPIPB3-212ENST00000543368 PRR5LQ6MZQ0 368 aa13.38□□□□□ -0.27
NPIPB3-212ENST00000543368 NBPF5PQ86XG9 351 aaPredicted RBP13.38□□□□□ -0.27
NPIPB3-212ENST00000543368 C2CD5Q86YS7 1000 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms