RNA–Protein interactions for RNA: ENST00000542541.6

HOMER3-205, Transcript of homer scaffold protein 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene HOMER3, Length 1,607 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOMER3-205ENST00000542541 LRRC4BQ9NT99 713 aa29.71■■■□□ 2.35
HOMER3-205ENST00000542541 EZH2Q15910 746 aaKnown RBP29.7■■■□□ 2.34
HOMER3-205ENST00000542541 DEFB132Q7Z7B7 95 aa29.7■■■□□ 2.34
HOMER3-205ENST00000542541 STK31Q9BXU1 1019 aa29.69■■■□□ 2.34
HOMER3-205ENST00000542541 ERBB4Q15303 1308 aa29.69■■■□□ 2.34
HOMER3-205ENST00000542541 NECTIN2Q92692 538 aa29.68■■■□□ 2.34
HOMER3-205ENST00000542541 LINC00116Q8NCU8 138 aa29.67■■■□□ 2.34
HOMER3-205ENST00000542541 DBF4Q9UBU7 674 aaPredicted RBP29.67■■■□□ 2.34
HOMER3-205ENST00000542541 CICQ96RK0 1608 aaPredicted RBP29.67■■■□□ 2.34
HOMER3-205ENST00000542541 CRKLP46109 303 aaKnown RBP29.66■■■□□ 2.34
HOMER3-205ENST00000542541 ALDH1L2Q3SY69 923 aa29.66■■■□□ 2.34
HOMER3-205ENST00000542541 RC3H1Q5TC82 1133 aaKnown RBP29.66■■■□□ 2.34
HOMER3-205ENST00000542541 CCDC87Q9NVE4 849 aa29.66■■■□□ 2.34
HOMER3-205ENST00000542541 NUP188Q5SRE5 1749 aa29.65■■■□□ 2.34
HOMER3-205ENST00000542541 CNTNAP4Q9C0A0 1308 aa29.65■■■□□ 2.34
HOMER3-205ENST00000542541 TJP1Q07157 1748 aa29.65■■■□□ 2.34
HOMER3-205ENST00000542541 A1BGP04217 495 aa29.64■■■□□ 2.34
HOMER3-205ENST00000542541 C5P01031 1676 aa29.64■■■□□ 2.33
HOMER3-205ENST00000542541 DDX21Q9NR30 783 aaKnown RBP eCLIP29.63■■■□□ 2.33
HOMER3-205ENST00000542541 CENPBP07199 599 aaPredicted RBP29.63■■■□□ 2.33
HOMER3-205ENST00000542541 RARSP54136 660 aaKnown RBP29.63■■■□□ 2.33
HOMER3-205ENST00000542541 CHPF2Q9P2E5 772 aa29.63■■■□□ 2.33
HOMER3-205ENST00000542541 INTS5Q6P9B9 1019 aaKnown RBP29.62■■■□□ 2.33
HOMER3-205ENST00000542541 RCAN3Q9UKA8 241 aa29.62■■■□□ 2.33
HOMER3-205ENST00000542541 LAMB4A4D0S4 1761 aa29.62■■■□□ 2.33
HOMER3-205ENST00000542541 SLC4A2P04920 1241 aa29.61■■■□□ 2.33
HOMER3-205ENST00000542541 SSH1Q8WYL5 1049 aa29.61■■■□□ 2.33
HOMER3-205ENST00000542541 HYPKQ9NX55 129 aa29.61■■■□□ 2.33
HOMER3-205ENST00000542541 TCERG1O14776 1098 aaKnown RBP29.6■■■□□ 2.33
HOMER3-205ENST00000542541 CANXP27824 592 aaKnown RBP29.6■■■□□ 2.33
HOMER3-205ENST00000542541 NPM2Q86SE8 214 aaKnown RBP29.6■■■□□ 2.33
HOMER3-205ENST00000542541 AK7Q96M32 723 aa29.6■■■□□ 2.33
HOMER3-205ENST00000542541 SMC4Q9NTJ3 1288 aa29.6■■■□□ 2.33
HOMER3-205ENST00000542541 PDIA6Q15084 440 aa29.6■■■□□ 2.33
HOMER3-205ENST00000542541 ZBTB1Q9Y2K1 713 aa29.6■■■□□ 2.33
HOMER3-205ENST00000542541 TAF1LQ8IZX4 1826 aa29.59■■■□□ 2.33
HOMER3-205ENST00000542541 NBPF26B4DH59 902 aa29.59■■■□□ 2.33
HOMER3-205ENST00000542541 IL6STP40189 918 aaPredicted RBP29.59■■■□□ 2.33
HOMER3-205ENST00000542541 NBPF14Q5TI25 921 aa29.59■■■□□ 2.33
HOMER3-205ENST00000542541 NBPF10Q6P3W6 841 aaKnown RBP29.59■■■□□ 2.33
HOMER3-205ENST00000542541 NBPF15Q8N660 670 aa29.59■■■□□ 2.33
HOMER3-205ENST00000542541 MYL6BP14649 208 aa29.58■■■□□ 2.33
HOMER3-205ENST00000542541 RPS6KA4O75676 772 aa29.57■■■□□ 2.32
HOMER3-205ENST00000542541 COL5A3P25940 1745 aaPredicted RBP29.57■■■□□ 2.32
HOMER3-205ENST00000542541 GNPATO15228 680 aa29.56■■■□□ 2.32
HOMER3-205ENST00000542541 RTCBQ9Y3I0 505 aaKnown RBP29.56■■■□□ 2.32
HOMER3-205ENST00000542541 PIP4K2AP48426 406 aaPredicted RBP29.56■■■□□ 2.32
HOMER3-205ENST00000542541 BRPF1P55201 1214 aaPredicted RBP29.56■■■□□ 2.32
HOMER3-205ENST00000542541 MRPL50Q8N5N7 158 aaKnown RBP29.56■■■□□ 2.32
HOMER3-205ENST00000542541 BCL2L13Q9BXK5 485 aa29.56■■■□□ 2.32
HOMER3-205ENST00000542541 PROSER3Q2NL68 480 aa29.55■■■□□ 2.32
HOMER3-205ENST00000542541 C4BP0C0L5 1744 aa29.54■■■□□ 2.32
HOMER3-205ENST00000542541 ANXA1P04083 346 aa29.54■■■□□ 2.32
HOMER3-205ENST00000542541 EIF5P55010 431 aaKnown RBP29.53■■■□□ 2.32
HOMER3-205ENST00000542541 AKT1S1Q96B36 256 aa29.53■■■□□ 2.32
HOMER3-205ENST00000542541 STK32BQ9NY57 414 aa29.53■■■□□ 2.32
HOMER3-205ENST00000542541 ZNF330Q9Y3S2 320 aaPredicted RBP29.53■■■□□ 2.32
HOMER3-205ENST00000542541 BCAR3O75815 825 aa29.53■■■□□ 2.32
HOMER3-205ENST00000542541 TFCP2L1Q9NZI6 479 aa29.53■■■□□ 2.32
HOMER3-205ENST00000542541 A0A087WZG4 1122 aa29.52■■■□□ 2.32
HOMER3-205ENST00000542541 LRP10Q7Z4F1 713 aa29.52■■■□□ 2.32
HOMER3-205ENST00000542541 KIF16BQ96L93 1317 aa29.51■■■□□ 2.32
HOMER3-205ENST00000542541 ADRA2BP18089 450 aa29.5■■■□□ 2.31
HOMER3-205ENST00000542541 PHAXQ9H814 394 aaKnown RBP29.5■■■□□ 2.31
HOMER3-205ENST00000542541 SSFA2P28290 1259 aa29.49■■■□□ 2.31
HOMER3-205ENST00000542541 FLIIQ13045 1269 aa29.49■■■□□ 2.31
HOMER3-205ENST00000542541 SLC15A2Q16348 729 aa29.49■■■□□ 2.31
HOMER3-205ENST00000542541 ZNF827Q17R98 1081 aa29.49■■■□□ 2.31
HOMER3-205ENST00000542541 TRAPPC3LQ5T215 181 aa29.49■■■□□ 2.31
HOMER3-205ENST00000542541 COPS6Q7L5N1 327 aa29.49■■■□□ 2.31
HOMER3-205ENST00000542541 XAGE3Q8WTP9 111 aa29.49■■■□□ 2.31
HOMER3-205ENST00000542541 IPO8O15397 1037 aaKnown RBP29.49■■■□□ 2.31
HOMER3-205ENST00000542541 DDX58O95786 925 aaKnown RBP29.49■■■□□ 2.31
HOMER3-205ENST00000542541 AIMP1Q12904 312 aaKnown RBP29.49■■■□□ 2.31
HOMER3-205ENST00000542541 FLAD1Q8NFF5 587 aa29.49■■■□□ 2.31
HOMER3-205ENST00000542541 MYH14Q7Z406 1995 aaKnown RBP29.48■■■□□ 2.31
HOMER3-205ENST00000542541 G2E3Q7L622 706 aa29.48■■■□□ 2.31
HOMER3-205ENST00000542541 ARXQ96QS3 562 aa29.48■■■□□ 2.31
HOMER3-205ENST00000542541 COL15A1P39059 1388 aa29.47■■■□□ 2.31
HOMER3-205ENST00000542541 PTPRCP08575 1304 aa29.47■■■□□ 2.31
HOMER3-205ENST00000542541 KIF6Q6ZMV9 814 aa29.46■■■□□ 2.31
HOMER3-205ENST00000542541 NOB1Q9ULX3 412 aaKnown RBP29.46■■■□□ 2.31
HOMER3-205ENST00000542541 CACNA1FO60840 1977 aa29.46■■■□□ 2.31
HOMER3-205ENST00000542541 TUBGCP6Q96RT7 1819 aa29.46■■■□□ 2.31
HOMER3-205ENST00000542541 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP29.45■■■□□ 2.31
HOMER3-205ENST00000542541 FKBP5Q13451 457 aaPredicted RBP29.45■■■□□ 2.31
HOMER3-205ENST00000542541 DZIP3Q86Y13 1208 aaKnown RBP29.45■■■□□ 2.31
HOMER3-205ENST00000542541 GOLGA6L2Q8N9W4 650 aaPredicted RBP29.45■■■□□ 2.31
HOMER3-205ENST00000542541 ARHGAP45Q92619 1136 aa29.45■■■□□ 2.31
HOMER3-205ENST00000542541 FRAT1Q92837 279 aaPredicted RBP29.45■■■□□ 2.31
HOMER3-205ENST00000542541 ANO8Q9HCE9 1232 aaPredicted RBP29.45■■■□□ 2.31
HOMER3-205ENST00000542541 PHF14O94880 888 aa29.45■■■□□ 2.3
HOMER3-205ENST00000542541 RFC4P35249 363 aa29.44■■■□□ 2.3
HOMER3-205ENST00000542541 ANKRD13DQ6ZTN6 518 aa29.44■■■□□ 2.3
HOMER3-205ENST00000542541 ARHGEF1Q92888 912 aaKnown RBP29.44■■■□□ 2.3
HOMER3-205ENST00000542541 TTLL7Q6ZT98 887 aa29.43■■■□□ 2.3
HOMER3-205ENST00000542541 TBC1D2BQ9UPU7 963 aa29.43■■■□□ 2.3
HOMER3-205ENST00000542541 PLBD2Q8NHP8 589 aa29.42■■■□□ 2.3
HOMER3-205ENST00000542541 ZKSCAN2Q63HK3 967 aa29.42■■■□□ 2.3
HOMER3-205ENST00000542541 KSR2Q6VAB6 950 aa29.42■■■□□ 2.3
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms