RNA–Protein interactions for RNA: ENST00000542033.5

USP28-210, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 852 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-210ENST00000542033 ANKMY2Q8IV38 441 aa6.14□□□□□ -1.43
USP28-210ENST00000542033 ERBB4Q15303 1308 aa6.14□□□□□ -1.43
USP28-210ENST00000542033 SFI1A8K8P3 1242 aa6.13□□□□□ -1.43
USP28-210ENST00000542033 ATG7O95352 703 aa6.13□□□□□ -1.43
USP28-210ENST00000542033 GMPRP36959 345 aa6.13□□□□□ -1.43
USP28-210ENST00000542033 EPHA4P54764 986 aa6.13□□□□□ -1.43
USP28-210ENST00000542033 PSMA6P60900 246 aaKnown RBP6.13□□□□□ -1.43
USP28-210ENST00000542033 FOXK2Q01167 660 aa6.13□□□□□ -1.43
USP28-210ENST00000542033 DPYDQ12882 1025 aa6.13□□□□□ -1.43
USP28-210ENST00000542033 EFHC2Q5JST6 749 aa6.13□□□□□ -1.43
USP28-210ENST00000542033 SLC9A9Q8IVB4 645 aa6.13□□□□□ -1.43
USP28-210ENST00000542033 TNS4Q8IZW8 715 aa6.13□□□□□ -1.43
USP28-210ENST00000542033 VWA5B2Q8N398 1253 aa6.13□□□□□ -1.43
USP28-210ENST00000542033 FAM200AQ8TCP9 573 aa6.13□□□□□ -1.43
USP28-210ENST00000542033 AIDAQ96BJ3 306 aa6.13□□□□□ -1.43
USP28-210ENST00000542033 TRERF1Q96PN7 1200 aa6.13□□□□□ -1.43
USP28-210ENST00000542033 GPAMQ9HCL2 828 aa6.13□□□□□ -1.43
USP28-210ENST00000542033 ZDHHC3Q9NYG2 299 aa6.13□□□□□ -1.43
USP28-210ENST00000542033 NOVA2Q9UNW9 492 aaKnown RBP6.13□□□□□ -1.43
USP28-210ENST00000542033 IQSEC3Q9UPP2 1182 aaPredicted RBP6.13□□□□□ -1.43
USP28-210ENST00000542033 MSX1P28360 303 aa6.12□□□□□ -1.43
USP28-210ENST00000542033 ELOAQ14241 798 aaKnown RBP6.12□□□□□ -1.43
USP28-210ENST00000542033 TEAD4Q15561 434 aa6.12□□□□□ -1.43
USP28-210ENST00000542033 TSEN2Q8NCE0 465 aaKnown RBP6.12□□□□□ -1.43
USP28-210ENST00000542033 GAS2L2Q8NHY3 880 aa6.12□□□□□ -1.43
USP28-210ENST00000542033 ZNF837Q96EG3 531 aaPredicted RBP6.12□□□□□ -1.43
USP28-210ENST00000542033 NUCKS1Q9H1E3 243 aaKnown RBP6.12□□□□□ -1.43
USP28-210ENST00000542033 ZNF232Q9UNY5 417 aa6.12□□□□□ -1.43
USP28-210ENST00000542033 SERTM1A2A2V5 107 aa6.11□□□□□ -1.43
USP28-210ENST00000542033 FAM181BA6NEQ2 426 aa6.11□□□□□ -1.43
USP28-210ENST00000542033 DKK1O94907 266 aa6.11□□□□□ -1.43
USP28-210ENST00000542033 HINFPQ9BQA5 517 aa6.11□□□□□ -1.43
USP28-210ENST00000542033 CRISPLD1Q9H336 500 aa6.11□□□□□ -1.43
USP28-210ENST00000542033 CUEDC1Q9NWM3 386 aaPredicted RBP6.11□□□□□ -1.43
USP28-210ENST00000542033 PHF24Q9UPV7 400 aa6.11□□□□□ -1.43
USP28-210ENST00000542033 USP3Q9Y6I4 520 aa6.11□□□□□ -1.43
USP28-210ENST00000542033 NOS2P35228 1153 aa6.1□□□□□ -1.43
USP28-210ENST00000542033 DBN1Q16643 649 aa6.1□□□□□ -1.43
USP28-210ENST00000542033 LCE2CQ5TA81 110 aa6.1□□□□□ -1.43
USP28-210ENST00000542033 FIGNL1Q6PIW4 674 aa6.1□□□□□ -1.43
USP28-210ENST00000542033 ZNF295-AS1Q8N0V1 137 aa6.1□□□□□ -1.43
USP28-210ENST00000542033 L3MBTL2Q969R5 705 aa6.1□□□□□ -1.43
USP28-210ENST00000542033 TSPAN10Q9H1Z9 355 aaPredicted RBP6.1□□□□□ -1.43
USP28-210ENST00000542033 RUBCNLQ9H714 662 aa6.1□□□□□ -1.43
USP28-210ENST00000542033 GPC6Q9Y625 555 aaPredicted RBP6.1□□□□□ -1.43
USP28-210ENST00000542033 PPP1R12BO60237 982 aaPredicted RBP6.09□□□□□ -1.43
USP28-210ENST00000542033 ARSJQ5FYB0 599 aaPredicted RBP6.09□□□□□ -1.43
USP28-210ENST00000542033 TBCELQ5QJ74 424 aa6.09□□□□□ -1.43
USP28-210ENST00000542033 NLRP8Q86W28 1048 aa6.09□□□□□ -1.43
USP28-210ENST00000542033 STAG2Q8N3U4 1231 aa6.09□□□□□ -1.43
USP28-210ENST00000542033 SCG3Q8WXD2 468 aaKnown RBP6.09□□□□□ -1.43
USP28-210ENST00000542033 GTPBP3Q969Y2 492 aaKnown RBP6.09□□□□□ -1.43
USP28-210ENST00000542033 ARXQ96QS3 562 aa6.09□□□□□ -1.43
USP28-210ENST00000542033 COL25A1Q9BXS0 654 aaPredicted RBP6.09□□□□□ -1.43
USP28-210ENST00000542033 ZMIZ1Q9ULJ6 1067 aa6.09□□□□□ -1.43
USP28-210ENST00000542033 PARP3Q9Y6F1 533 aa6.09□□□□□ -1.43
USP28-210ENST00000542033 GJA3Q9Y6H8 435 aa6.09□□□□□ -1.43
USP28-210ENST00000542033 ATAD2Q6PL18 1390 aa6.08□□□□□ -1.44
USP28-210ENST00000542033 ATP4AP20648 1035 aa6.08□□□□□ -1.44
USP28-210ENST00000542033 IGFBP4P22692 258 aa6.08□□□□□ -1.44
USP28-210ENST00000542033 HIRAP54198 1017 aaPredicted RBP6.08□□□□□ -1.44
USP28-210ENST00000542033 SWI5Q1ZZU3 235 aa6.08□□□□□ -1.44
USP28-210ENST00000542033 BICDL1Q6ZP65 573 aa6.08□□□□□ -1.44
USP28-210ENST00000542033 GPR161Q8N6U8 529 aaKnown RBP6.08□□□□□ -1.44
USP28-210ENST00000542033 ZDHHC1Q8WTX9 485 aa6.08□□□□□ -1.44
USP28-210ENST00000542033 STK32AQ8WU08 396 aa6.08□□□□□ -1.44
USP28-210ENST00000542033 NEUROD4Q9HD90 331 aa6.08□□□□□ -1.44
USP28-210ENST00000542033 NSFL1CQ9UNZ2 370 aaKnown RBP6.08□□□□□ -1.44
USP28-210ENST00000542033 A0A1W2PNR3 127 aa6.07□□□□□ -1.44
USP28-210ENST00000542033 EML1O00423 815 aa6.07□□□□□ -1.44
USP28-210ENST00000542033 PDE4CQ08493 712 aa6.07□□□□□ -1.44
USP28-210ENST00000542033 HIF1AQ16665 826 aa6.07□□□□□ -1.44
USP28-210ENST00000542033 TMEM164Q5U3C3 297 aa6.07□□□□□ -1.44
USP28-210ENST00000542033 C1orf53Q5VUE5 145 aa6.07□□□□□ -1.44
USP28-210ENST00000542033 CHMP7Q8WUX9 453 aaPredicted RBP6.07□□□□□ -1.44
USP28-210ENST00000542033 CNTNAP3BQ96NU0 1288 aa6.07□□□□□ -1.44
USP28-210ENST00000542033 CFHR5Q9BXR6 569 aa6.07□□□□□ -1.44
USP28-210ENST00000542033 CNTNAP3Q9BZ76 1288 aa6.07□□□□□ -1.44
USP28-210ENST00000542033 GPR25O00155 361 aa6.06□□□□□ -1.44
USP28-210ENST00000542033 TXLNAP40222 546 aa6.06□□□□□ -1.44
USP28-210ENST00000542033 POTEAQ6S8J7 498 aa6.06□□□□□ -1.44
USP28-210ENST00000542033 RHPN1Q8TCX5 695 aa6.06□□□□□ -1.44
USP28-210ENST00000542033 VTI1AQ96AJ9 217 aa6.06□□□□□ -1.44
USP28-210ENST00000542033 C2orf49Q9BVC5 232 aaPredicted RBP6.06□□□□□ -1.44
USP28-210ENST00000542033 UTP3Q9NQZ2 479 aaKnown RBP eCLIP6.06□□□□□ -1.447e-6■■■■■ 74.5
USP28-210ENST00000542033 MBIPQ9NS73 344 aa6.06□□□□□ -1.44
USP28-210ENST00000542033 ATXN7L1Q9ULK2 861 aaPredicted RBP6.06□□□□□ -1.44
USP28-210ENST00000542033 FOXO3O43524 673 aa6.05□□□□□ -1.44
USP28-210ENST00000542033 C21orf2O43822 256 aa6.05□□□□□ -1.44
USP28-210ENST00000542033 LGR5O75473 907 aa6.05□□□□□ -1.44
USP28-210ENST00000542033 MX2P20592 715 aa6.05□□□□□ -1.44
USP28-210ENST00000542033 SRSF11Q05519 484 aaKnown RBP6.05□□□□□ -1.44
USP28-210ENST00000542033 ZSCAN1Q8NBB4 408 aa6.05□□□□□ -1.44
USP28-210ENST00000542033 ZIC5Q96T25 663 aa6.05□□□□□ -1.44
USP28-210ENST00000542033 PHACTR1Q9C0D0 580 aa6.05□□□□□ -1.44
USP28-210ENST00000542033 ANKIB1Q9P2G1 1089 aa6.05□□□□□ -1.44
USP28-210ENST00000542033 USTQ9Y2C2 406 aa6.05□□□□□ -1.44
USP28-210ENST00000542033 PCDHGC4Q9Y5F7 938 aa6.05□□□□□ -1.44
USP28-210ENST00000542033 ATXN7O15265 892 aaPredicted RBP6.04□□□□□ -1.44
USP28-210ENST00000542033 WEE1P30291 646 aa6.04□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 69 ms