RNA–Protein interactions for RNA: ENST00000541667.5

CLSTN3-211, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 671 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-211ENST00000541667 N4BP2Q86UW6 1770 aaPredicted RBP15.87■□□□□ 0.13
CLSTN3-211ENST00000541667 EIF5P55010 431 aaKnown RBP15.86■□□□□ 0.13
CLSTN3-211ENST00000541667 CFAP53Q96M91 514 aa15.86■□□□□ 0.13
CLSTN3-211ENST00000541667 SIPA1L3O60292 1781 aaPredicted RBP15.85■□□□□ 0.13
CLSTN3-211ENST00000541667 FCHSD2O94868 740 aa15.85■□□□□ 0.13
CLSTN3-211ENST00000541667 ATP10DQ9P241 1426 aa15.85■□□□□ 0.13
CLSTN3-211ENST00000541667 U2AF1L5P0DN76 240 aaPredicted RBP15.84■□□□□ 0.13
CLSTN3-211ENST00000541667 U2AF1Q01081 240 aaKnown RBP eCLIP15.84■□□□□ 0.13
CLSTN3-211ENST00000541667 TEFQ10587 303 aa15.84■□□□□ 0.13
CLSTN3-211ENST00000541667 NFIXQ14938 502 aa15.84■□□□□ 0.13
CLSTN3-211ENST00000541667 HEG1Q9ULI3 1381 aa15.84■□□□□ 0.13
CLSTN3-211ENST00000541667 ZPR1O75312 459 aa15.83■□□□□ 0.12
CLSTN3-211ENST00000541667 CANXP27824 592 aaKnown RBP15.83■□□□□ 0.12
CLSTN3-211ENST00000541667 NUDCQ9Y266 331 aa15.83■□□□□ 0.12
CLSTN3-211ENST00000541667 BCS1LQ9Y276 419 aa15.83■□□□□ 0.12
CLSTN3-211ENST00000541667 COL15A1P39059 1388 aa15.83■□□□□ 0.12
CLSTN3-211ENST00000541667 BRCA1P38398 1863 aaKnown RBP15.82■□□□□ 0.12
CLSTN3-211ENST00000541667 STARD3NLO95772 234 aa15.82■□□□□ 0.12
CLSTN3-211ENST00000541667 TTC5Q8N0Z6 440 aa15.82■□□□□ 0.12
CLSTN3-211ENST00000541667 GIGYF1O75420 1035 aaPredicted RBP15.81■□□□□ 0.12
CLSTN3-211ENST00000541667 A1BGP04217 495 aa15.81■□□□□ 0.12
CLSTN3-211ENST00000541667 CHRNA5P30532 468 aa15.81■□□□□ 0.12
CLSTN3-211ENST00000541667 MCM10Q7L590 875 aa15.81■□□□□ 0.12
CLSTN3-211ENST00000541667 TEX13AQ9BXU3 409 aaPredicted RBP15.81■□□□□ 0.12
CLSTN3-211ENST00000541667 BTBD11A6QL63 1104 aa15.8■□□□□ 0.12
CLSTN3-211ENST00000541667 DCTN1Q14203 1278 aa15.8■□□□□ 0.12
CLSTN3-211ENST00000541667 FMNL2Q96PY5 1086 aa15.8■□□□□ 0.12
CLSTN3-211ENST00000541667 PLEKHF1Q96S99 279 aa15.8■□□□□ 0.12
CLSTN3-211ENST00000541667 PIM2Q9P1W9 311 aa15.8■□□□□ 0.12
CLSTN3-211ENST00000541667 USP16Q9Y5T5 823 aa15.8■□□□□ 0.12
CLSTN3-211ENST00000541667 PRAMEF22A3QJZ6 481 aa15.79■□□□□ 0.12
CLSTN3-211ENST00000541667 SERPINB2P05120 415 aa15.79■□□□□ 0.12
CLSTN3-211ENST00000541667 AFDNP55196 1824 aaKnown RBP15.78■□□□□ 0.12
CLSTN3-211ENST00000541667 NRXN2Q9P2S2 1712 aa15.78■□□□□ 0.12
CLSTN3-211ENST00000541667 HTATSF1O43719 755 aaKnown RBP15.78■□□□□ 0.12
CLSTN3-211ENST00000541667 IL6STP40189 918 aaPredicted RBP15.78■□□□□ 0.12
CLSTN3-211ENST00000541667 ARHGAP27Q6ZUM4 889 aa15.78■□□□□ 0.12
CLSTN3-211ENST00000541667 TBC1D9BQ66K14 1250 aa15.77■□□□□ 0.12
CLSTN3-211ENST00000541667 GPBP1L1Q9HC44 474 aaPredicted RBP15.77■□□□□ 0.12
CLSTN3-211ENST00000541667 TBC1D2BQ9UPU7 963 aa15.77■□□□□ 0.12
CLSTN3-211ENST00000541667 A0A087WZG4 1122 aa15.76■□□□□ 0.11
CLSTN3-211ENST00000541667 KIF3CO14782 793 aa15.76■□□□□ 0.11
CLSTN3-211ENST00000541667 DALRD3Q5D0E6 543 aaKnown RBP15.76■□□□□ 0.11
CLSTN3-211ENST00000541667 ZNF526Q8TF50 670 aaPredicted RBP15.76■□□□□ 0.11
CLSTN3-211ENST00000541667 CAMTA2O94983 1202 aa15.75■□□□□ 0.11
CLSTN3-211ENST00000541667 ARFGEF1Q9Y6D6 1849 aa15.75■□□□□ 0.11
CLSTN3-211ENST00000541667 CARMIL3Q8ND23 1372 aa15.75■□□□□ 0.11
CLSTN3-211ENST00000541667 SENP3-EIF4A1A0A087X0R7 540 aa15.74■□□□□ 0.11
CLSTN3-211ENST00000541667 NBPF26B4DH59 902 aa15.74■□□□□ 0.11
CLSTN3-211ENST00000541667 PIP4K2AP48426 406 aaPredicted RBP15.74■□□□□ 0.11
CLSTN3-211ENST00000541667 TAF7Q15545 349 aaPredicted RBP15.74■□□□□ 0.11
CLSTN3-211ENST00000541667 NBPF10Q6P3W6 841 aaKnown RBP15.74■□□□□ 0.11
CLSTN3-211ENST00000541667 BICDL1Q6ZP65 573 aa15.74■□□□□ 0.11
CLSTN3-211ENST00000541667 NBPF15Q8N660 670 aa15.74■□□□□ 0.11
CLSTN3-211ENST00000541667 RTF1Q92541 710 aaKnown RBP15.74■□□□□ 0.11
CLSTN3-211ENST00000541667 MIS18AQ9NYP9 233 aa15.74■□□□□ 0.11
CLSTN3-211ENST00000541667 SNRPA1P09661 255 aaKnown RBP15.73■□□□□ 0.11
CLSTN3-211ENST00000541667 PRELPP51888 382 aa15.73■□□□□ 0.11
CLSTN3-211ENST00000541667 C9orf131Q5VYM1 1079 aa15.72■□□□□ 0.11
CLSTN3-211ENST00000541667 PRR5LQ6MZQ0 368 aa15.71■□□□□ 0.11
CLSTN3-211ENST00000541667 CCDC24Q8N4L8 307 aa15.71■□□□□ 0.11
CLSTN3-211ENST00000541667 CEP350Q5VT06 3117 aa15.7■□□□□ 0.1
CLSTN3-211ENST00000541667 NFE2L2Q16236 605 aa15.7■□□□□ 0.1
CLSTN3-211ENST00000541667 C2CD5Q86YS7 1000 aa15.7■□□□□ 0.1
CLSTN3-211ENST00000541667 THUMPD2Q9BTF0 503 aaKnown RBP15.7■□□□□ 0.1
CLSTN3-211ENST00000541667 BRIP1Q9BX63 1249 aa15.7■□□□□ 0.1
CLSTN3-211ENST00000541667 ZNF330Q9Y3S2 320 aaPredicted RBP15.7■□□□□ 0.1
CLSTN3-211ENST00000541667 SBF1O95248 1867 aa15.69■□□□□ 0.1
CLSTN3-211ENST00000541667 DLG5Q8TDM6 1919 aa15.69■□□□□ 0.1
CLSTN3-211ENST00000541667 DDX10Q13206 875 aaKnown RBP15.69■□□□□ 0.1
CLSTN3-211ENST00000541667 DZIP3Q86Y13 1208 aaKnown RBP15.69■□□□□ 0.1
CLSTN3-211ENST00000541667 TTLL6Q8N841 843 aa15.69■□□□□ 0.1
CLSTN3-211ENST00000541667 ANKRD31Q8N7Z5 1873 aa15.69■□□□□ 0.1
CLSTN3-211ENST00000541667 SCN7AQ01118 1682 aa15.68■□□□□ 0.1
CLSTN3-211ENST00000541667 H0YIN7 160 aa15.68■□□□□ 0.1
CLSTN3-211ENST00000541667 EIF4A1P60842 406 aaKnown RBP15.68■□□□□ 0.1
CLSTN3-211ENST00000541667 RALBP1Q15311 655 aa15.68■□□□□ 0.1
CLSTN3-211ENST00000541667 CLEC4GQ6UXB4 293 aa15.68■□□□□ 0.1
CLSTN3-211ENST00000541667 NMRK2Q9NPI5 230 aa15.68■□□□□ 0.1
CLSTN3-211ENST00000541667 DLEC1Q9Y238 1755 aa15.67■□□□□ 0.1
CLSTN3-211ENST00000541667 SETDB2Q96T68 719 aa15.67■□□□□ 0.1
CLSTN3-211ENST00000541667 NFKBIEO00221 500 aa15.66■□□□□ 0.1
CLSTN3-211ENST00000541667 RASSF7Q02833 373 aa15.66■□□□□ 0.1
CLSTN3-211ENST00000541667 RGL2O15211 777 aa15.65■□□□□ 0.1
CLSTN3-211ENST00000541667 HSPA6P17066 643 aa15.65■□□□□ 0.1
CLSTN3-211ENST00000541667 PDE6BP35913 854 aa15.65■□□□□ 0.1
CLSTN3-211ENST00000541667 HLFQ16534 295 aa15.65■□□□□ 0.1
CLSTN3-211ENST00000541667 PNISRQ8TF01 805 aaKnown RBP15.65■□□□□ 0.1
CLSTN3-211ENST00000541667 RNF181Q9P0P0 153 aa15.65■□□□□ 0.1
CLSTN3-211ENST00000541667 BCORQ6W2J9 1755 aa15.64■□□□□ 0.1
CLSTN3-211ENST00000541667 KLRG2A4D1S0 409 aaPredicted RBP15.64■□□□□ 0.09
CLSTN3-211ENST00000541667 PDZRN3Q9UPQ7 1066 aa15.64■□□□□ 0.09
CLSTN3-211ENST00000541667 KDM3BQ7LBC6 1761 aa15.64■□□□□ 0.09
CLSTN3-211ENST00000541667 TOMM70O94826 608 aa15.63■□□□□ 0.09
CLSTN3-211ENST00000541667 SRGNP10124 158 aa15.63■□□□□ 0.09
CLSTN3-211ENST00000541667 CNBD1Q8NA66 436 aa15.63■□□□□ 0.09
CLSTN3-211ENST00000541667 C7orf43Q8WVR3 580 aa15.63■□□□□ 0.09
CLSTN3-211ENST00000541667 PNNQ9H307 717 aaKnown RBP15.63■□□□□ 0.09
CLSTN3-211ENST00000541667 NEFMP07197 916 aa15.62■□□□□ 0.09
CLSTN3-211ENST00000541667 LMNB1P20700 586 aa15.62■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 118.1 ms