RNA–Protein interactions for RNA: ENST00000541259.1

DDX55-208, Transcript of DEAD-box helicase 55, human

TSL 3

Gene DDX55, Length 460 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX55-208	ENST00000541259	BABAM1	Q9NWV8	329 aa		12.12	□□□□□ -0.47
DDX55-208	ENST00000541259	ASAP1	Q9ULH1	1129 aa		12.12	□□□□□ -0.47
DDX55-208	ENST00000541259	C5	P01031	1676 aa		12.11	□□□□□ -0.47
DDX55-208	ENST00000541259	ELL2	O00472	640 aa	Predicted RBP	12.11	□□□□□ -0.47
DDX55-208	ENST00000541259	EIF4A1	P60842	406 aa	Known RBP	12.11	□□□□□ -0.47
DDX55-208	ENST00000541259	ZNF790	Q6PG37	636 aa		12.11	□□□□□ -0.47
DDX55-208	ENST00000541259	PIP4P2	Q8N4L2	257 aa		12.11	□□□□□ -0.47
DDX55-208	ENST00000541259	TSPYL6	Q8N831	410 aa		12.11	□□□□□ -0.47
DDX55-208	ENST00000541259	ATG3	Q9NT62	314 aa		12.11	□□□□□ -0.47
DDX55-208	ENST00000541259	FARP1	Q9Y4F1	1045 aa	Predicted RBP	12.11	□□□□□ -0.47
DDX55-208	ENST00000541259	KCP	Q6ZWJ8	1503 aa		12.1	□□□□□ -0.47
DDX55-208	ENST00000541259	PRAMEF22	A3QJZ6	481 aa		12.09	□□□□□ -0.47
DDX55-208	ENST00000541259	TRIM37	O94972	964 aa		12.09	□□□□□ -0.47
DDX55-208	ENST00000541259	ZNF496	Q96IT1	587 aa	Predicted RBP	12.09	□□□□□ -0.47
DDX55-208	ENST00000541259	PTCD1	O75127	700 aa	Known RBP	12.08	□□□□□ -0.48
DDX55-208	ENST00000541259	TTC5	Q8N0Z6	440 aa		12.08	□□□□□ -0.48
DDX55-208	ENST00000541259	BCL11B	Q9C0K0	894 aa	Predicted RBP	12.08	□□□□□ -0.48
DDX55-208	ENST00000541259	LY75	O60449	1722 aa		12.08	□□□□□ -0.48
DDX55-208	ENST00000541259	TNS1	Q9HBL0	1735 aa	Known RBP	12.08	□□□□□ -0.48
DDX55-208	ENST00000541259	HEG1	Q9ULI3	1381 aa		12.07	□□□□□ -0.48
DDX55-208	ENST00000541259	CACNA1F	O60840	1977 aa		12.07	□□□□□ -0.48
DDX55-208	ENST00000541259	VAMP4	O75379	141 aa		12.07	□□□□□ -0.48
DDX55-208	ENST00000541259	TWISTNB	Q3B726	338 aa	Predicted RBP	12.07	□□□□□ -0.48
DDX55-208	ENST00000541259	SLC4A9	Q96Q91	983 aa		12.07	□□□□□ -0.48
DDX55-208	ENST00000541259	TJP1	Q07157	1748 aa		12.06	□□□□□ -0.48
DDX55-208	ENST00000541259	LAMB4	A4D0S4	1761 aa		12.06	□□□□□ -0.48
DDX55-208	ENST00000541259	GIGYF1	O75420	1035 aa	Predicted RBP	12.06	□□□□□ -0.48
DDX55-208	ENST00000541259	CENPB	P07199	599 aa	Predicted RBP	12.06	□□□□□ -0.48
DDX55-208	ENST00000541259	FMNL2	Q96PY5	1086 aa		12.06	□□□□□ -0.48
DDX55-208	ENST00000541259	TAF1L	Q8IZX4	1826 aa		12.05	□□□□□ -0.48
DDX55-208	ENST00000541259	TCERG1	O14776	1098 aa	Known RBP	12.05	□□□□□ -0.48
DDX55-208	ENST00000541259	NECTIN2	Q92692	538 aa		12.05	□□□□□ -0.48
DDX55-208	ENST00000541259	USP16	Q9Y5T5	823 aa		12.05	□□□□□ -0.48
DDX55-208	ENST00000541259	MYH14	Q7Z406	1995 aa	Known RBP	12.05	□□□□□ -0.48
DDX55-208	ENST00000541259	PALLD	Q8WX93	1383 aa		12.05	□□□□□ -0.48
DDX55-208	ENST00000541259	EIF2S2	P20042	333 aa	Known RBP	12.04	□□□□□ -0.48
DDX55-208	ENST00000541259	KCNQ4	P56696	695 aa		12.04	□□□□□ -0.48
DDX55-208	ENST00000541259	RASEF	Q8IZ41	740 aa		12.04	□□□□□ -0.48
DDX55-208	ENST00000541259	SMARCC1	Q92922	1105 aa	Predicted RBP	12.04	□□□□□ -0.48
DDX55-208	ENST00000541259	COL5A3	P25940	1745 aa	Predicted RBP	12.03	□□□□□ -0.48
DDX55-208	ENST00000541259	SNRPA1	P09661	255 aa	Known RBP	12.03	□□□□□ -0.48
DDX55-208	ENST00000541259	RARS	P54136	660 aa	Known RBP	12.03	□□□□□ -0.48
DDX55-208	ENST00000541259	DNAJC10	Q8IXB1	793 aa		12.03	□□□□□ -0.48
DDX55-208	ENST00000541259	BCL2L13	Q9BXK5	485 aa		12.03	□□□□□ -0.48
DDX55-208	ENST00000541259	RCAN3	Q9UKA8	241 aa		12.03	□□□□□ -0.48
DDX55-208	ENST00000541259	ZNF831	Q5JPB2	1677 aa		12.03	□□□□□ -0.48
DDX55-208	ENST00000541259	LOC102724428	A0A0B4J2F2	783 aa		12.02	□□□□□ -0.49
DDX55-208	ENST00000541259	BCAR3	O75815	825 aa		12.02	□□□□□ -0.49
DDX55-208	ENST00000541259	APBA3	O96018	575 aa		12.02	□□□□□ -0.49
DDX55-208	ENST00000541259	HOXB7	P09629	217 aa		12.02	□□□□□ -0.49
DDX55-208	ENST00000541259	CT47B1	P0C2W7	299 aa	Predicted RBP	12.02	□□□□□ -0.49
DDX55-208	ENST00000541259	ATP6V1A	P38606	617 aa		12.02	□□□□□ -0.49
DDX55-208	ENST00000541259	SIK1	P57059	783 aa		12.02	□□□□□ -0.49
DDX55-208	ENST00000541259	ITPK1	Q13572	414 aa		12.02	□□□□□ -0.49
DDX55-208	ENST00000541259	VSIG10	Q8N0Z9	540 aa		12.02	□□□□□ -0.49
DDX55-208	ENST00000541259	SSH1	Q8WYL5	1049 aa		12.02	□□□□□ -0.49
DDX55-208	ENST00000541259	CIC	Q96RK0	1608 aa	Predicted RBP	12.01	□□□□□ -0.49
DDX55-208	ENST00000541259	PIP4K2A	P48426	406 aa	Predicted RBP	12.01	□□□□□ -0.49
DDX55-208	ENST00000541259	HDGFL1	Q5TGJ6	251 aa		12.01	□□□□□ -0.49
DDX55-208	ENST00000541259	ANXA1	P04083	346 aa		12	□□□□□ -0.49
DDX55-208	ENST00000541259	A1BG	P04217	495 aa		12	□□□□□ -0.49
DDX55-208	ENST00000541259	PROSER3	Q2NL68	480 aa		12	□□□□□ -0.49
DDX55-208	ENST00000541259	MRPL50	Q8N5N7	158 aa	Known RBP	12	□□□□□ -0.49
DDX55-208	ENST00000541259	SOS1	Q07889	1333 aa	Predicted RBP	12	□□□□□ -0.49
DDX55-208	ENST00000541259	CYP19A1	P11511	503 aa	Predicted RBP	11.99	□□□□□ -0.49
DDX55-208	ENST00000541259	PDIA6	Q15084	440 aa		11.99	□□□□□ -0.49
DDX55-208	ENST00000541259	ALDH1L2	Q3SY69	923 aa		11.99	□□□□□ -0.49
DDX55-208	ENST00000541259	CCDC30	Q5VVM6	783 aa		11.99	□□□□□ -0.49
DDX55-208	ENST00000541259	ILDR2	Q71H61	639 aa		11.99	□□□□□ -0.49
DDX55-208	ENST00000541259	G2E3	Q7L622	706 aa		11.99	□□□□□ -0.49
DDX55-208	ENST00000541259	LINC00116	Q8NCU8	138 aa		11.99	□□□□□ -0.49
DDX55-208	ENST00000541259	LRRC4B	Q9NT99	713 aa		11.99	□□□□□ -0.49
DDX55-208	ENST00000541259	SMC4	Q9NTJ3	1288 aa		11.99	□□□□□ -0.49
DDX55-208	ENST00000541259	CHPF2	Q9P2E5	772 aa		11.99	□□□□□ -0.49
DDX55-208	ENST00000541259	CCNL1	Q9UK58	526 aa	Predicted RBP	11.99	□□□□□ -0.49
DDX55-208	ENST00000541259	SUPT16H	Q9Y5B9	1047 aa	Known RBP	11.99	□□□□□ -0.49
DDX55-208	ENST00000541259	RGPD3	A6NKT7	1758 aa	Predicted RBP	11.99	□□□□□ -0.49
DDX55-208	ENST00000541259	RGPD4	Q7Z3J3	1758 aa		11.99	□□□□□ -0.49
DDX55-208	ENST00000541259	RREB1	Q92766	1687 aa		11.98	□□□□□ -0.49
DDX55-208	ENST00000541259	NBPF26	B4DH59	902 aa		11.98	□□□□□ -0.49
DDX55-208	ENST00000541259	PLSCR1	O15162	318 aa		11.98	□□□□□ -0.49
DDX55-208	ENST00000541259	NBPF14	Q5TI25	921 aa		11.98	□□□□□ -0.49
DDX55-208	ENST00000541259	NBPF10	Q6P3W6	841 aa	Known RBP	11.98	□□□□□ -0.49
DDX55-208	ENST00000541259	NBPF15	Q8N660	670 aa		11.98	□□□□□ -0.49
DDX55-208	ENST00000541259	ZNF428	Q96B54	188 aa		11.98	□□□□□ -0.49
DDX55-208	ENST00000541259	TEX13A	Q9BXU3	409 aa	Predicted RBP	11.98	□□□□□ -0.49
DDX55-208	ENST00000541259	TSPYL2	Q9H2G4	693 aa	Predicted RBP	11.98	□□□□□ -0.49
DDX55-208	ENST00000541259	PLIN1	O60240	522 aa		11.97	□□□□□ -0.49
DDX55-208	ENST00000541259	MYL6B	P14649	208 aa		11.97	□□□□□ -0.49
DDX55-208	ENST00000541259	EN1	Q05925	392 aa	Predicted RBP	11.97	□□□□□ -0.49
DDX55-208	ENST00000541259	TXNRD1	Q16881	649 aa		11.97	□□□□□ -0.49
DDX55-208	ENST00000541259	INTS5	Q6P9B9	1019 aa	Known RBP	11.97	□□□□□ -0.49
DDX55-208	ENST00000541259	STK31	Q9BXU1	1019 aa		11.97	□□□□□ -0.49
DDX55-208	ENST00000541259	PHAX	Q9H814	394 aa	Known RBP	11.97	□□□□□ -0.49
DDX55-208	ENST00000541259	C4B	P0C0L5	1744 aa		11.97	□□□□□ -0.49
DDX55-208	ENST00000541259	STARD3NL	O95772	234 aa		11.96	□□□□□ -0.49
DDX55-208	ENST00000541259	CANX	P27824	592 aa	Known RBP	11.96	□□□□□ -0.49
DDX55-208	ENST00000541259	CRKL	P46109	303 aa	Known RBP	11.96	□□□□□ -0.49
DDX55-208	ENST00000541259	EZH2	Q15910	746 aa	Known RBP	11.96	□□□□□ -0.49
DDX55-208	ENST00000541259	LRP10	Q7Z4F1	713 aa		11.96	□□□□□ -0.49

Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms