RNA–Protein interactions for RNA: ENST00000538439.1

NPIPB3-209, Transcript of nuclear pore complex interacting protein family member B3, humanhuman

TSL 4

Gene NPIPB3, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPIPB3-209ENST00000538439 MAP3K7O43318 606 aa13.21□□□□□ -0.29
NPIPB3-209ENST00000538439 ADAMTS2O95450 1211 aa13.21□□□□□ -0.29
NPIPB3-209ENST00000538439 AEBP1Q8IUX7 1158 aa13.21□□□□□ -0.29
NPIPB3-209ENST00000538439 COL18A1P39060 1754 aa13.21□□□□□ -0.29
NPIPB3-209ENST00000538439 KDRP35968 1356 aa13.2□□□□□ -0.3
NPIPB3-209ENST00000538439 RGPD1P0DJD0 1748 aa13.2□□□□□ -0.3
NPIPB3-209ENST00000538439 POTEIP0CG38 1075 aa13.2□□□□□ -0.3
NPIPB3-209ENST00000538439 TMPOP42166 694 aaKnown RBP13.2□□□□□ -0.3
NPIPB3-209ENST00000538439 PDE3BQ13370 1112 aa13.2□□□□□ -0.3
NPIPB3-209ENST00000538439 USHBP1Q8N6Y0 703 aa13.2□□□□□ -0.3
NPIPB3-209ENST00000538439 ARXQ96QS3 562 aa13.2□□□□□ -0.3
NPIPB3-209ENST00000538439 BCL9LQ86UU0 1499 aa13.2□□□□□ -0.3
NPIPB3-209ENST00000538439 WDR17Q8IZU2 1322 aa13.19□□□□□ -0.3
NPIPB3-209ENST00000538439 NFE2L2Q16236 605 aa13.19□□□□□ -0.3
NPIPB3-209ENST00000538439 TYW1BQ6NUM6 668 aa13.19□□□□□ -0.3
NPIPB3-209ENST00000538439 POTEHQ6S545 545 aa13.19□□□□□ -0.3
NPIPB3-209ENST00000538439 TOM1L2Q6ZVM7 507 aa13.19□□□□□ -0.3
NPIPB3-209ENST00000538439 PHACTR3Q96KR7 559 aa13.19□□□□□ -0.3
NPIPB3-209ENST00000538439 STRN4Q9NRL3 753 aa13.19□□□□□ -0.3
NPIPB3-209ENST00000538439 BTG4Q9NY30 223 aa13.19□□□□□ -0.3
NPIPB3-209ENST00000538439 RRP7AQ9Y3A4 280 aaKnown RBP13.19□□□□□ -0.3
NPIPB3-209ENST00000538439 PCDHGA4Q9Y5G9 962 aa13.19□□□□□ -0.3
NPIPB3-209ENST00000538439 CAMTA1Q9Y6Y1 1673 aa13.18□□□□□ -0.3
NPIPB3-209ENST00000538439 COL14A1Q05707 1796 aaKnown RBP13.18□□□□□ -0.3
NPIPB3-209ENST00000538439 RIPK4P57078 832 aa13.18□□□□□ -0.3
NPIPB3-209ENST00000538439 LMOD3Q0VAK6 560 aa13.18□□□□□ -0.3
NPIPB3-209ENST00000538439 CCDC27Q2M243 656 aa13.18□□□□□ -0.3
NPIPB3-209ENST00000538439 SLAIN1Q8ND83 568 aa13.18□□□□□ -0.3
NPIPB3-209ENST00000538439 GAS2L2Q8NHY3 880 aa13.18□□□□□ -0.3
NPIPB3-209ENST00000538439 CDHR5Q9HBB8 845 aa13.18□□□□□ -0.3
NPIPB3-209ENST00000538439 RGPD5Q99666 1765 aa13.17□□□□□ -0.3
NPIPB3-209ENST00000538439 COL5A2P05997 1499 aaPredicted RBP13.17□□□□□ -0.3
NPIPB3-209ENST00000538439 RAPGEF4Q8WZA2 1011 aa13.17□□□□□ -0.3
NPIPB3-209ENST00000538439 FBXW7Q969H0 707 aa13.17□□□□□ -0.3
NPIPB3-209ENST00000538439 LMO7Q8WWI1 1683 aa13.17□□□□□ -0.3
NPIPB3-209ENST00000538439 LRP5O75197 1615 aa13.17□□□□□ -0.3
NPIPB3-209ENST00000538439 NCAPD2Q15021 1401 aa13.16□□□□□ -0.3
NPIPB3-209ENST00000538439 FAM208AQ9UK61 1670 aaKnown RBP13.16□□□□□ -0.3
NPIPB3-209ENST00000538439 TATP17735 454 aaPredicted RBP13.16□□□□□ -0.3
NPIPB3-209ENST00000538439 AMOTQ4VCS5 1084 aa13.16□□□□□ -0.3
NPIPB3-209ENST00000538439 PLEKHO1Q53GL0 409 aaPredicted RBP13.16□□□□□ -0.3
NPIPB3-209ENST00000538439 WWC1Q8IX03 1113 aa13.16□□□□□ -0.3
NPIPB3-209ENST00000538439 NGLY1Q96IV0 654 aa13.16□□□□□ -0.3
NPIPB3-209ENST00000538439 CARD10Q9BWT7 1032 aa13.16□□□□□ -0.3
NPIPB3-209ENST00000538439 PCDHGA10Q9Y5H3 936 aa13.16□□□□□ -0.3
NPIPB3-209ENST00000538439 LARP1Q6PKG0 1096 aaKnown RBP13.15□□□□□ -0.3
NPIPB3-209ENST00000538439 CCDC125Q86Z20 511 aa13.15□□□□□ -0.3
NPIPB3-209ENST00000538439 WDR63Q8IWG1 891 aa13.15□□□□□ -0.3
NPIPB3-209ENST00000538439 NPDC1Q9NQX5 325 aaPredicted RBP13.15□□□□□ -0.3
NPIPB3-209ENST00000538439 USP21Q9UK80 565 aa13.15□□□□□ -0.3
NPIPB3-209ENST00000538439 CALD1Q05682 793 aaKnown RBP13.14□□□□□ -0.31
NPIPB3-209ENST00000538439 MTHFSDQ2M296 383 aaKnown RBP13.14□□□□□ -0.31
NPIPB3-209ENST00000538439 TRPC5Q9UL62 973 aaPredicted RBP13.14□□□□□ -0.31
NPIPB3-209ENST00000538439 ZNF521Q96K83 1311 aa13.13□□□□□ -0.31
NPIPB3-209ENST00000538439 CRB1P82279 1406 aa13.13□□□□□ -0.31
NPIPB3-209ENST00000538439 PLEKHG2Q9H7P9 1386 aa13.13□□□□□ -0.31
NPIPB3-209ENST00000538439 GIGYF2Q6Y7W6 1299 aaKnown RBP13.13□□□□□ -0.31
NPIPB3-209ENST00000538439 RTF1Q92541 710 aaKnown RBP13.13□□□□□ -0.31
NPIPB3-209ENST00000538439 SPG7Q9UQ90 795 aa13.13□□□□□ -0.31
NPIPB3-209ENST00000538439 RGPD2P0DJD1 1756 aa13.12□□□□□ -0.31
NPIPB3-209ENST00000538439 HTATSF1O43719 755 aaKnown RBP13.12□□□□□ -0.31
NPIPB3-209ENST00000538439 GLI3P10071 1580 aa13.11□□□□□ -0.31
NPIPB3-209ENST00000538439 GNAT3A8MTJ3 354 aa13.11□□□□□ -0.31
NPIPB3-209ENST00000538439 E9PSI1 815 aa13.11□□□□□ -0.31
NPIPB3-209ENST00000538439 IL2RBP14784 551 aa13.11□□□□□ -0.31
NPIPB3-209ENST00000538439 C1orf141Q5JVX7 400 aa13.11□□□□□ -0.31
NPIPB3-209ENST00000538439 ZNF530Q6P9A1 599 aaPredicted RBP13.11□□□□□ -0.31
NPIPB3-209ENST00000538439 UNC5CLQ8IV45 518 aa13.11□□□□□ -0.31
NPIPB3-209ENST00000538439 GOPCQ9HD26 462 aa13.11□□□□□ -0.31
NPIPB3-209ENST00000538439 USP35Q9P2H5 1018 aa13.11□□□□□ -0.31
NPIPB3-209ENST00000538439 IL16Q14005 1332 aa13.11□□□□□ -0.31
NPIPB3-209ENST00000538439 SLIT2O94813 1529 aa13.1□□□□□ -0.31
NPIPB3-209ENST00000538439 CLCN1P35523 988 aa13.1□□□□□ -0.31
NPIPB3-209ENST00000538439 SLFN5Q08AF3 891 aa13.1□□□□□ -0.31
NPIPB3-209ENST00000538439 TSR1Q2NL82 804 aaKnown RBP13.1□□□□□ -0.31
NPIPB3-209ENST00000538439 DEFB132Q7Z7B7 95 aa13.1□□□□□ -0.31
NPIPB3-209ENST00000538439 CDCA7LQ96GN5 454 aa13.1□□□□□ -0.31
NPIPB3-209ENST00000538439 THRAP3Q9Y2W1 955 aaKnown RBP13.1□□□□□ -0.31
NPIPB3-209ENST00000538439 CCDC9Q9Y3X0 531 aaKnown RBP13.1□□□□□ -0.31
NPIPB3-209ENST00000538439 MAP3K5Q99683 1374 aa13.09□□□□□ -0.31
NPIPB3-209ENST00000538439 PLCH1Q4KWH8 1693 aa13.09□□□□□ -0.31
NPIPB3-209ENST00000538439 AKAP4Q5JQC9 854 aa13.09□□□□□ -0.31
NPIPB3-209ENST00000538439 SP7Q8TDD2 431 aaPredicted RBP13.09□□□□□ -0.31
NPIPB3-209ENST00000538439 MYH16Q9H6N6 1097 aa13.09□□□□□ -0.31
NPIPB3-209ENST00000538439 NWD2Q9ULI1 1742 aa13.08□□□□□ -0.32
NPIPB3-209ENST00000538439 GJD4Q96KN9 370 aaPredicted RBP13.08□□□□□ -0.32
NPIPB3-209ENST00000538439 CDCA7Q9BWT1 371 aaPredicted RBP13.08□□□□□ -0.32
NPIPB3-209ENST00000538439 VPS72Q15906 364 aa13.07□□□□□ -0.32
NPIPB3-209ENST00000538439 MCM10Q7L590 875 aa13.07□□□□□ -0.32
NPIPB3-209ENST00000538439 IFNL2Q8IZJ0 200 aa13.07□□□□□ -0.32
NPIPB3-209ENST00000538439 ZCRB1Q8TBF4 217 aaKnown RBP13.07□□□□□ -0.32
NPIPB3-209ENST00000538439 GPCPD1Q9NPB8 672 aa13.07□□□□□ -0.32
NPIPB3-209ENST00000538439 MEGF6O75095 1541 aa13.07□□□□□ -0.32
NPIPB3-209ENST00000538439 SPATA31A1Q5TZJ5 1347 aa13.07□□□□□ -0.32
NPIPB3-209ENST00000538439 OVOS2A0A0G2JMS6 1433 aa13.06□□□□□ -0.32
NPIPB3-209ENST00000538439 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.06□□□□□ -0.32
NPIPB3-209ENST00000538439 HSP90AB1P08238 724 aaKnown RBP13.06□□□□□ -0.32
NPIPB3-209ENST00000538439 MS4A1P11836 297 aa13.06□□□□□ -0.32
NPIPB3-209ENST00000538439 FOSBP53539 338 aa13.06□□□□□ -0.32
NPIPB3-209ENST00000538439 GNAI1P63096 354 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms