RNA–Protein interactions for RNA: ENST00000537408.1

CLSTN3-207, Transcript of calsyntenin 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLSTN3, Length 4,296 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-207ENST00000537408 GGNBP2Q9H3C7 697 aa12.95□□□□□ -0.34
CLSTN3-207ENST00000537408 UNC13BO14795 1591 aa12.95□□□□□ -0.34
CLSTN3-207ENST00000537408 A0A1B0GUL7 405 aa12.94□□□□□ -0.34
CLSTN3-207ENST00000537408 CHRNA2Q15822 529 aa12.94□□□□□ -0.34
CLSTN3-207ENST00000537408 ITPRIPQ8IWB1 547 aa12.94□□□□□ -0.34
CLSTN3-207ENST00000537408 RBM42Q9BTD8 480 aaKnown RBP12.94□□□□□ -0.34
CLSTN3-207ENST00000537408 CCDC172P0C7W6 258 aa12.94□□□□□ -0.34
CLSTN3-207ENST00000537408 NOP2P46087 812 aaKnown RBP12.94□□□□□ -0.34
CLSTN3-207ENST00000537408 DRC7Q8IY82 874 aa12.94□□□□□ -0.34
CLSTN3-207ENST00000537408 CEP120Q8N960 986 aa12.94□□□□□ -0.34
CLSTN3-207ENST00000537408 KDM4AO75164 1064 aa12.94□□□□□ -0.34
CLSTN3-207ENST00000537408 CDC45O75419 566 aa12.94□□□□□ -0.34
CLSTN3-207ENST00000537408 RLBP1P12271 317 aa12.94□□□□□ -0.34
CLSTN3-207ENST00000537408 MNS1Q8NEH6 495 aa12.94□□□□□ -0.34
CLSTN3-207ENST00000537408 BRPF1P55201 1214 aaPredicted RBP12.93□□□□□ -0.34
CLSTN3-207ENST00000537408 TPD52L1Q16890 204 aaPredicted RBP12.93□□□□□ -0.34
CLSTN3-207ENST00000537408 MUM1L1Q5H9M0 696 aa12.93□□□□□ -0.34
CLSTN3-207ENST00000537408 ZNF592Q92610 1267 aa12.93□□□□□ -0.34
CLSTN3-207ENST00000537408 C16orf45Q96MC5 204 aaPredicted RBP12.93□□□□□ -0.34
CLSTN3-207ENST00000537408 BTG4Q9NY30 223 aa12.93□□□□□ -0.34
CLSTN3-207ENST00000537408 KCNG1Q9UIX4 513 aa12.93□□□□□ -0.34
CLSTN3-207ENST00000537408 GUCY2CP25092 1073 aa12.93□□□□□ -0.34
CLSTN3-207ENST00000537408 CALRP27797 417 aaKnown RBP12.93□□□□□ -0.34
CLSTN3-207ENST00000537408 FOXD4L5Q5VV16 416 aaPredicted RBP12.93□□□□□ -0.34
CLSTN3-207ENST00000537408 FOXD4L4Q8WXT5 416 aaPredicted RBP12.93□□□□□ -0.34
CLSTN3-207ENST00000537408 BCL2L13Q9BXK5 485 aa12.93□□□□□ -0.34
CLSTN3-207ENST00000537408 LNPKQ9C0E8 428 aa12.93□□□□□ -0.34
CLSTN3-207ENST00000537408 MYO3AQ8NEV4 1616 aa12.93□□□□□ -0.34
CLSTN3-207ENST00000537408 KIF1BO60333 1816 aa12.93□□□□□ -0.34
CLSTN3-207ENST00000537408 BAG6P46379 1132 aa12.93□□□□□ -0.34
CLSTN3-207ENST00000537408 RBM6P78332 1123 aaKnown RBP12.93□□□□□ -0.34
CLSTN3-207ENST00000537408 CCDC91Q7Z6B0 441 aa12.93□□□□□ -0.34
CLSTN3-207ENST00000537408 PYCARDQ9ULZ3 195 aa12.93□□□□□ -0.34
CLSTN3-207ENST00000537408 CCDC183Q5T5S1 534 aa12.93□□□□□ -0.34
CLSTN3-207ENST00000537408 CASC1Q6TDU7 716 aa12.93□□□□□ -0.34
CLSTN3-207ENST00000537408 KIF2CQ99661 725 aa12.93□□□□□ -0.34
CLSTN3-207ENST00000537408 SPC24Q8NBT2 197 aa12.92□□□□□ -0.34
CLSTN3-207ENST00000537408 PIK3C2BO00750 1634 aa12.92□□□□□ -0.34
CLSTN3-207ENST00000537408 ROBO2Q9HCK4 1378 aa12.92□□□□□ -0.34
CLSTN3-207ENST00000537408 AFF2P51816 1311 aa12.92□□□□□ -0.34
CLSTN3-207ENST00000537408 NBPF14Q5TI25 921 aa12.92□□□□□ -0.34
CLSTN3-207ENST00000537408 KRBA2Q6ZNG9 492 aa12.92□□□□□ -0.34
CLSTN3-207ENST00000537408 CCDC191Q8NCU4 936 aa12.92□□□□□ -0.34
CLSTN3-207ENST00000537408 AK7Q96M32 723 aa12.92□□□□□ -0.34
CLSTN3-207ENST00000537408 TOMM22Q9NS69 142 aa12.92□□□□□ -0.34
CLSTN3-207ENST00000537408 TTC31Q49AM3 519 aaPredicted RBP12.92□□□□□ -0.34
CLSTN3-207ENST00000537408 ARGLU1Q9NWB6 273 aaPredicted RBP12.91□□□□□ -0.34
CLSTN3-207ENST00000537408 MYO1CO00159 1063 aa12.91□□□□□ -0.34
CLSTN3-207ENST00000537408 SLFNL1Q499Z3 407 aa12.91□□□□□ -0.34
CLSTN3-207ENST00000537408 CHD1LQ86WJ1 897 aa12.91□□□□□ -0.34
CLSTN3-207ENST00000537408 DDX54Q8TDD1 881 aaKnown RBP12.91□□□□□ -0.34
CLSTN3-207ENST00000537408 CDCA7Q9BWT1 371 aaPredicted RBP12.91□□□□□ -0.34
CLSTN3-207ENST00000537408 ZKSCAN7Q9P0L1 754 aaPredicted RBP12.91□□□□□ -0.34
CLSTN3-207ENST00000537408 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.91□□□□□ -0.34
CLSTN3-207ENST00000537408 TBC1D9Q6ZT07 1266 aa12.9□□□□□ -0.34
CLSTN3-207ENST00000537408 JRKLQ9Y4A0 524 aa12.9□□□□□ -0.34
CLSTN3-207ENST00000537408 FAM135BQ49AJ0 1406 aa12.9□□□□□ -0.34
CLSTN3-207ENST00000537408 NUCB1Q02818 461 aa12.9□□□□□ -0.34
CLSTN3-207ENST00000537408 SYT10Q6XYQ8 523 aa12.9□□□□□ -0.34
CLSTN3-207ENST00000537408 CNKSR2Q8WXI2 1034 aa12.9□□□□□ -0.34
CLSTN3-207ENST00000537408 ERO1AQ96HE7 468 aa12.9□□□□□ -0.34
CLSTN3-207ENST00000537408 RRP7AQ9Y3A4 280 aaKnown RBP12.9□□□□□ -0.34
CLSTN3-207ENST00000537408 LRRFIP2Q9Y608 721 aaKnown RBP12.9□□□□□ -0.34
CLSTN3-207ENST00000537408 PIK3C2GO75747 1445 aa12.9□□□□□ -0.34
CLSTN3-207ENST00000537408 PPIP5K1Q6PFW1 1433 aa12.9□□□□□ -0.34
CLSTN3-207ENST00000537408 TDO2P48775 406 aa12.89□□□□□ -0.35
CLSTN3-207ENST00000537408 PPP1R1BQ9UD71 204 aaPredicted RBP12.89□□□□□ -0.35
CLSTN3-207ENST00000537408 SYNMO15061 1565 aa12.89□□□□□ -0.35
CLSTN3-207ENST00000537408 HCLS1P14317 486 aaPredicted RBP12.89□□□□□ -0.35
CLSTN3-207ENST00000537408 KMT5BQ4FZB7 885 aa12.89□□□□□ -0.35
CLSTN3-207ENST00000537408 CEP135Q66GS9 1140 aa12.89□□□□□ -0.35
CLSTN3-207ENST00000537408 SLIT1O75093 1534 aa12.89□□□□□ -0.35
CLSTN3-207ENST00000537408 KIF1CO43896 1103 aaKnown RBP12.89□□□□□ -0.35
CLSTN3-207ENST00000537408 DDB1Q16531 1140 aa12.89□□□□□ -0.35
CLSTN3-207ENST00000537408 DRC1Q96MC2 740 aa12.89□□□□□ -0.35
CLSTN3-207ENST00000537408 NSFL1CQ9UNZ2 370 aaKnown RBP12.89□□□□□ -0.35
CLSTN3-207ENST00000537408 GCP02774 474 aa12.88□□□□□ -0.35
CLSTN3-207ENST00000537408 SATB1Q01826 763 aa12.88□□□□□ -0.35
CLSTN3-207ENST00000537408 PKP1Q13835 747 aa12.88□□□□□ -0.35
CLSTN3-207ENST00000537408 HSP90AB3PQ58FF7 597 aa12.88□□□□□ -0.35
CLSTN3-207ENST00000537408 SPG7Q9UQ90 795 aa12.88□□□□□ -0.35
CLSTN3-207ENST00000537408 KIF1BPQ96EK5 621 aa12.88□□□□□ -0.35
CLSTN3-207ENST00000537408 ARHGAP23Q9P227 1491 aa12.88□□□□□ -0.35
CLSTN3-207ENST00000537408 V9GYY5 206 aaPredicted RBP12.88□□□□□ -0.35
CLSTN3-207ENST00000537408 TTC21BQ7Z4L5 1316 aa12.88□□□□□ -0.35
CLSTN3-207ENST00000537408 CARD10Q9BWT7 1032 aa12.88□□□□□ -0.35
CLSTN3-207ENST00000537408 TNNQ9UQP3 1299 aa12.88□□□□□ -0.35
CLSTN3-207ENST00000537408 ZSCAN26Q16670 478 aa12.87□□□□□ -0.35
CLSTN3-207ENST00000537408 ANKRD45Q5TZF3 282 aa12.87□□□□□ -0.35
CLSTN3-207ENST00000537408 PRAG1Q86YV5 1406 aa12.87□□□□□ -0.35
CLSTN3-207ENST00000537408 DIAPH1O60610 1272 aaKnown RBP12.87□□□□□ -0.35
CLSTN3-207ENST00000537408 TEFQ10587 303 aa12.87□□□□□ -0.35
CLSTN3-207ENST00000537408 PLEKHO1Q53GL0 409 aaPredicted RBP12.87□□□□□ -0.35
CLSTN3-207ENST00000537408 NEK11Q8NG66 645 aa12.87□□□□□ -0.35
CLSTN3-207ENST00000537408 GTF3C6Q969F1 213 aa12.87□□□□□ -0.35
CLSTN3-207ENST00000537408 MED14O60244 1454 aa12.86□□□□□ -0.35
CLSTN3-207ENST00000537408 PUS7Q96PZ0 661 aaKnown RBP12.86□□□□□ -0.35
CLSTN3-207ENST00000537408 CCDC171Q6TFL3 1326 aa12.86□□□□□ -0.35
CLSTN3-207ENST00000537408 MTHFSP49914 203 aa12.86□□□□□ -0.35
CLSTN3-207ENST00000537408 LEKR1Q6ZMV7 388 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 60.6 ms