RNA–Protein interactions for RNA: ENST00000537002.5

PTPRD-213, Transcript of protein tyrosine phosphatase, receptor type D, humanhuman

TSL 1 (best) BASIC

Gene PTPRD, Length 8,224 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRD-213ENST00000537002 UNC13BO14795 1591 aa6.32□□□□□ -1.4
PTPRD-213ENST00000537002 KCNJ6P48051 423 aa6.32□□□□□ -1.4
PTPRD-213ENST00000537002 CCDC91Q7Z6B0 441 aa6.32□□□□□ -1.4
PTPRD-213ENST00000537002 CEP57L1Q8IYX8 460 aa6.32□□□□□ -1.4
PTPRD-213ENST00000537002 SMARCA5O60264 1052 aaPredicted RBP6.32□□□□□ -1.4
PTPRD-213ENST00000537002 MMP14P50281 582 aa6.32□□□□□ -1.4
PTPRD-213ENST00000537002 POTEB2H3BUK9 544 aa6.32□□□□□ -1.4
PTPRD-213ENST00000537002 RIOK3O14730 519 aaKnown RBP6.32□□□□□ -1.4
PTPRD-213ENST00000537002 SLU7O95391 586 aaKnown RBP6.32□□□□□ -1.4
PTPRD-213ENST00000537002 ANKRD20A12PQ8NF67 263 aa6.32□□□□□ -1.4
PTPRD-213ENST00000537002 UTP14AQ9BVJ6 771 aaKnown RBP6.32□□□□□ -1.4
PTPRD-213ENST00000537002 MKRN1Q9UHC7 482 aaKnown RBP6.32□□□□□ -1.4
PTPRD-213ENST00000537002 EIF2S2P20042 333 aaKnown RBP6.32□□□□□ -1.4
PTPRD-213ENST00000537002 SF3B2Q13435 895 aaKnown RBP6.32□□□□□ -1.4
PTPRD-213ENST00000537002 TRIM29Q14134 588 aa6.32□□□□□ -1.4
PTPRD-213ENST00000537002 CNTROBQ8N137 903 aa6.32□□□□□ -1.4
PTPRD-213ENST00000537002 GAS2L2Q8NHY3 880 aa6.32□□□□□ -1.4
PTPRD-213ENST00000537002 NCAPGQ9BPX3 1015 aa6.32□□□□□ -1.4
PTPRD-213ENST00000537002 A0A1B0GUL7 405 aa6.32□□□□□ -1.4
PTPRD-213ENST00000537002 PSMA5P28066 241 aa6.32□□□□□ -1.4
PTPRD-213ENST00000537002 ATP2B3Q16720 1220 aa6.32□□□□□ -1.4
PTPRD-213ENST00000537002 TWISTNBQ3B726 338 aaPredicted RBP6.32□□□□□ -1.4
PTPRD-213ENST00000537002 PDRG1Q9NUG6 133 aa6.32□□□□□ -1.4
PTPRD-213ENST00000537002 GOLGA6L9A6NEM1 432 aa6.31□□□□□ -1.4
PTPRD-213ENST00000537002 ZNF710Q8N1W2 664 aa6.31□□□□□ -1.4
PTPRD-213ENST00000537002 RGS22Q8NE09 1264 aa6.31□□□□□ -1.4
PTPRD-213ENST00000537002 HOOK1Q9UJC3 728 aaKnown RBP6.31□□□□□ -1.4
PTPRD-213ENST00000537002 TRAPPC8Q9Y2L5 1435 aa6.31□□□□□ -1.4
PTPRD-213ENST00000537002 NUP153P49790 1475 aaKnown RBP6.31□□□□□ -1.4
PTPRD-213ENST00000537002 CYP46A1Q9Y6A2 500 aa6.31□□□□□ -1.4
PTPRD-213ENST00000537002 PIK3R4Q99570 1358 aa6.31□□□□□ -1.4
PTPRD-213ENST00000537002 SLFN14P0C7P3 912 aa6.31□□□□□ -1.4
PTPRD-213ENST00000537002 CDC25BP30305 580 aa6.31□□□□□ -1.4
PTPRD-213ENST00000537002 PBRM1Q86U86 1689 aa6.31□□□□□ -1.4
PTPRD-213ENST00000537002 FANCAO15360 1455 aa6.31□□□□□ -1.4
PTPRD-213ENST00000537002 CASQ1P31415 396 aa6.31□□□□□ -1.4
PTPRD-213ENST00000537002 STK38Q15208 465 aa6.31□□□□□ -1.4
PTPRD-213ENST00000537002 PLA2R1Q13018 1463 aa6.31□□□□□ -1.4
PTPRD-213ENST00000537002 EVC2Q86UK5 1308 aa6.31□□□□□ -1.4
PTPRD-213ENST00000537002 CCDC83Q8IWF9 413 aa6.31□□□□□ -1.4
PTPRD-213ENST00000537002 DDX19AQ9NUU7 478 aaKnown RBP6.31□□□□□ -1.4
PTPRD-213ENST00000537002 ZNF330Q9Y3S2 320 aaPredicted RBP6.31□□□□□ -1.4
PTPRD-213ENST00000537002 A6NNZ2 444 aa6.31□□□□□ -1.4
PTPRD-213ENST00000537002 ME1P48163 572 aa6.31□□□□□ -1.4
PTPRD-213ENST00000537002 TRDNQ13061 729 aa6.31□□□□□ -1.4
PTPRD-213ENST00000537002 TUBB8Q3ZCM7 444 aa6.31□□□□□ -1.4
PTPRD-213ENST00000537002 GIMAP6Q6P9H5 292 aa6.31□□□□□ -1.4
PTPRD-213ENST00000537002 CCDC186Q7Z3E2 898 aa6.31□□□□□ -1.4
PTPRD-213ENST00000537002 C10orf67Q8IYJ2 551 aa6.31□□□□□ -1.4
PTPRD-213ENST00000537002 ZBTB9Q96C00 473 aa6.31□□□□□ -1.4
PTPRD-213ENST00000537002 LRRCC1Q9C099 1032 aa6.31□□□□□ -1.4
PTPRD-213ENST00000537002 PSD3Q9NYI0 1048 aa6.31□□□□□ -1.4
PTPRD-213ENST00000537002 TMEM63CQ9P1W3 806 aa6.31□□□□□ -1.4
PTPRD-213ENST00000537002 MED14O60244 1454 aa6.31□□□□□ -1.4
PTPRD-213ENST00000537002 MAST1Q9Y2H9 1570 aa6.31□□□□□ -1.4
PTPRD-213ENST00000537002 KIAA0556O60303 1618 aa6.31□□□□□ -1.4
PTPRD-213ENST00000537002 CLTCL1P53675 1640 aa6.31□□□□□ -1.4
PTPRD-213ENST00000537002 TRIM27P14373 513 aa6.3□□□□□ -1.4
PTPRD-213ENST00000537002 CYP2C19P33261 490 aa6.3□□□□□ -1.4
PTPRD-213ENST00000537002 DDX11Q96FC9 970 aa6.3□□□□□ -1.4
PTPRD-213ENST00000537002 LARP6Q9BRS8 491 aaKnown RBP6.3□□□□□ -1.4
PTPRD-213ENST00000537002 FSD1Q9BTV5 496 aa6.3□□□□□ -1.4
PTPRD-213ENST00000537002 SRCIN1Q9C0H9 1055 aa6.3□□□□□ -1.4
PTPRD-213ENST00000537002 CTAGE5O15320 804 aa6.3□□□□□ -1.4
PTPRD-213ENST00000537002 SFPQP23246 707 aaKnown RBP eCLIP6.3□□□□□ -1.4
PTPRD-213ENST00000537002 CUL4AQ13619 759 aa6.3□□□□□ -1.4
PTPRD-213ENST00000537002 DCTN1Q14203 1278 aa6.3□□□□□ -1.4
PTPRD-213ENST00000537002 ICE2Q659A1 982 aa6.3□□□□□ -1.4
PTPRD-213ENST00000537002 RSPH14Q9UHP6 348 aa6.3□□□□□ -1.4
PTPRD-213ENST00000537002 MAGI2Q86UL8 1455 aa6.3□□□□□ -1.4
PTPRD-213ENST00000537002 TICAM2Q86XR7 235 aa6.3□□□□□ -1.4
PTPRD-213ENST00000537002 CERS3Q8IU89 383 aa6.3□□□□□ -1.4
PTPRD-213ENST00000537002 ZNF396Q96N95 335 aaPredicted RBP6.3□□□□□ -1.4
PTPRD-213ENST00000537002 HDAC5Q9UQL6 1122 aa6.3□□□□□ -1.4
PTPRD-213ENST00000537002 FAM135BQ49AJ0 1406 aa6.3□□□□□ -1.4
PTPRD-213ENST00000537002 SHTN1A0MZ66 631 aa6.3□□□□□ -1.4
PTPRD-213ENST00000537002 JAKMIP1Q96N16 626 aaKnown RBP6.3□□□□□ -1.4
PTPRD-213ENST00000537002 MINK1Q8N4C8 1332 aaPredicted RBP6.3□□□□□ -1.4
PTPRD-213ENST00000537002 USP32Q8NFA0 1604 aa6.3□□□□□ -1.4
PTPRD-213ENST00000537002 IQGAP1P46940 1657 aa6.3□□□□□ -1.4
PTPRD-213ENST00000537002 NCBP1Q09161 790 aaKnown RBP6.3□□□□□ -1.4
PTPRD-213ENST00000537002 SNW1Q13573 536 aaKnown RBP6.3□□□□□ -1.4
PTPRD-213ENST00000537002 GOLGA5Q8TBA6 731 aa6.3□□□□□ -1.4
PTPRD-213ENST00000537002 PPM1EQ8WY54 764 aa6.3□□□□□ -1.4
PTPRD-213ENST00000537002 GTF3C6Q969F1 213 aa6.3□□□□□ -1.4
PTPRD-213ENST00000537002 LTV1Q96GA3 475 aaPredicted RBP6.3□□□□□ -1.4
PTPRD-213ENST00000537002 ZSCAN31Q96LW9 406 aaPredicted RBP6.3□□□□□ -1.4
PTPRD-213ENST00000537002 GBP3Q9H0R5 595 aa6.3□□□□□ -1.4
PTPRD-213ENST00000537002 TNNQ9UQP3 1299 aa6.3□□□□□ -1.4
PTPRD-213ENST00000537002 PTPRCP08575 1304 aa6.3□□□□□ -1.4
PTPRD-213ENST00000537002 PPIP5K1Q6PFW1 1433 aa6.3□□□□□ -1.4
PTPRD-213ENST00000537002 EXOC4Q96A65 974 aa6.3□□□□□ -1.4
PTPRD-213ENST00000537002 IQGAP3Q86VI3 1631 aa6.3□□□□□ -1.4
PTPRD-213ENST00000537002 IQSEC2Q5JU85 1478 aa6.3□□□□□ -1.4
PTPRD-213ENST00000537002 ATF3P18847 181 aa6.3□□□□□ -1.4
PTPRD-213ENST00000537002 PRKAR2BP31323 418 aa6.3□□□□□ -1.4
PTPRD-213ENST00000537002 SCAND2PQ9GZW5 306 aaPredicted RBP6.3□□□□□ -1.4
PTPRD-213ENST00000537002 KCND1Q9NSA2 647 aa6.3□□□□□ -1.4
PTPRD-213ENST00000537002 SURF6O75683 361 aaKnown RBP6.29□□□□□ -1.4
PTPRD-213ENST00000537002 CBFA2T2O43439 604 aa6.29□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms