RNA–Protein interactions for RNA: ENST00000535081.1

SYNE1-232, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 561 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-232ENST00000535081 MAP7D1Q3KQU3 841 aa10.78□□□□□ -0.68
SYNE1-232ENST00000535081 PLPP7Q8NBV4 271 aa10.78□□□□□ -0.68
SYNE1-232ENST00000535081 AIDAQ96BJ3 306 aa10.78□□□□□ -0.68
SYNE1-232ENST00000535081 BTBD6Q96KE9 485 aa10.78□□□□□ -0.68
SYNE1-232ENST00000535081 ATXN7O15265 892 aaPredicted RBP10.77□□□□□ -0.69
SYNE1-232ENST00000535081 DGKGP49619 791 aa10.77□□□□□ -0.69
SYNE1-232ENST00000535081 XP32Q5T750 250 aa10.77□□□□□ -0.69
SYNE1-232ENST00000535081 GDPD2Q9HCC8 539 aa10.77□□□□□ -0.69
SYNE1-232ENST00000535081 DCDC2BA2VCK2 349 aa10.76□□□□□ -0.69
SYNE1-232ENST00000535081 ABL2P42684 1182 aa10.76□□□□□ -0.69
SYNE1-232ENST00000535081 WASHC4Q2M389 1173 aa10.75□□□□□ -0.69
SYNE1-232ENST00000535081 NBPF1Q3BBV0 1214 aa10.75□□□□□ -0.69
SYNE1-232ENST00000535081 ZNF295-AS1Q8N0V1 137 aa10.75□□□□□ -0.69
SYNE1-232ENST00000535081 SERTAD1Q9UHV2 236 aa10.75□□□□□ -0.69
SYNE1-232ENST00000535081 A0A1W2PNR3 127 aa10.74□□□□□ -0.69
SYNE1-232ENST00000535081 MAPTP10636 758 aaKnown RBP10.74□□□□□ -0.69
SYNE1-232ENST00000535081 ARSJQ5FYB0 599 aaPredicted RBP10.74□□□□□ -0.69
SYNE1-232ENST00000535081 TMEM229AB2RXF0 380 aa10.73□□□□□ -0.69
SYNE1-232ENST00000535081 CD33P20138 364 aa10.73□□□□□ -0.69
SYNE1-232ENST00000535081 ADH6P28332 368 aa10.73□□□□□ -0.69
SYNE1-232ENST00000535081 TNP2Q05952 138 aa10.73□□□□□ -0.69
SYNE1-232ENST00000535081 FAM182BQ5T319 152 aa10.73□□□□□ -0.69
SYNE1-232ENST00000535081 CHSY3Q70JA7 882 aa10.73□□□□□ -0.69
SYNE1-232ENST00000535081 NOP53Q9NZM5 478 aaKnown RBP10.73□□□□□ -0.69
SYNE1-232ENST00000535081 HCN2Q9UL51 889 aa10.73□□□□□ -0.69
SYNE1-232ENST00000535081 KHNYNO15037 678 aaKnown RBP10.72□□□□□ -0.69
SYNE1-232ENST00000535081 FURINP09958 794 aa10.72□□□□□ -0.69
SYNE1-232ENST00000535081 TATP17735 454 aaPredicted RBP10.72□□□□□ -0.69
SYNE1-232ENST00000535081 SOX11P35716 441 aa10.72□□□□□ -0.69
SYNE1-232ENST00000535081 SEMA3FQ13275 785 aa10.72□□□□□ -0.69
SYNE1-232ENST00000535081 MTFR1Q15390 333 aa10.72□□□□□ -0.69
SYNE1-232ENST00000535081 SLC4A9Q96Q91 983 aa10.72□□□□□ -0.69
SYNE1-232ENST00000535081 AVENQ9NQS1 362 aaPredicted RBP10.72□□□□□ -0.69
SYNE1-232ENST00000535081 ZDHHC3Q9NYG2 299 aa10.72□□□□□ -0.69
SYNE1-232ENST00000535081 IQSEC3Q9UPP2 1182 aaPredicted RBP10.72□□□□□ -0.69
SYNE1-232ENST00000535081 A6NJY4 79 aa10.71□□□□□ -0.69
SYNE1-232ENST00000535081 C1QTNF9BB2RNN3 333 aa10.71□□□□□ -0.69
SYNE1-232ENST00000535081 CDK2AP1O14519 115 aa10.71□□□□□ -0.69
SYNE1-232ENST00000535081 KLF15Q9UIH9 416 aa10.71□□□□□ -0.69
SYNE1-232ENST00000535081 USP3Q9Y6I4 520 aa10.71□□□□□ -0.69
SYNE1-232ENST00000535081 FAM157BP0CG42 384 aa10.7□□□□□ -0.7
SYNE1-232ENST00000535081 FCHSD1Q86WN1 690 aa10.7□□□□□ -0.7
SYNE1-232ENST00000535081 CABP1Q9NZU7 370 aa10.7□□□□□ -0.7
SYNE1-232ENST00000535081 CD163Q86VB7 1156 aa10.69□□□□□ -0.7
SYNE1-232ENST00000535081 ZIC5Q96T25 663 aa10.69□□□□□ -0.7
SYNE1-232ENST00000535081 GJA3Q9Y6H8 435 aa10.69□□□□□ -0.7
SYNE1-232ENST00000535081 PCDHGA11Q9Y5H2 935 aa10.68□□□□□ -0.7
SYNE1-232ENST00000535081 CHRNA4P43681 627 aa10.67□□□□□ -0.7
SYNE1-232ENST00000535081 ZNF468Q5VIY5 522 aaPredicted RBP10.67□□□□□ -0.7
SYNE1-232ENST00000535081 PIK3CDO00329 1044 aa10.66□□□□□ -0.7
SYNE1-232ENST00000535081 PCBP4P57723 403 aaKnown RBP10.66□□□□□ -0.7
SYNE1-232ENST00000535081 SAMD5Q5TGI4 173 aa10.66□□□□□ -0.7
SYNE1-232ENST00000535081 BICDL1Q6ZP65 573 aa10.66□□□□□ -0.7
SYNE1-232ENST00000535081 PRR12Q9ULL5 1215 aa10.66□□□□□ -0.7
SYNE1-232ENST00000535081 MCM6Q14566 821 aa10.65□□□□□ -0.7
SYNE1-232ENST00000535081 EML3Q32P44 896 aa10.65□□□□□ -0.7
SYNE1-232ENST00000535081 BACH1O14867 736 aa10.64□□□□□ -0.71
SYNE1-232ENST00000535081 TPRNQ4KMQ1 711 aa10.64□□□□□ -0.71
SYNE1-232ENST00000535081 MARK1Q9P0L2 795 aa10.64□□□□□ -0.71
SYNE1-232ENST00000535081 PARP3Q9Y6F1 533 aa10.64□□□□□ -0.71
SYNE1-232ENST00000535081 EFSO43281 561 aa10.63□□□□□ -0.71
SYNE1-232ENST00000535081 LAMC2Q13753 1193 aa10.63□□□□□ -0.71
SYNE1-232ENST00000535081 STRN4Q9NRL3 753 aa10.63□□□□□ -0.71
SYNE1-232ENST00000535081 TXLNAP40222 546 aa10.62□□□□□ -0.71
SYNE1-232ENST00000535081 GTF2IP78347 998 aa10.62□□□□□ -0.71
SYNE1-232ENST00000535081 Q8N3U1 123 aa10.62□□□□□ -0.71
SYNE1-232ENST00000535081 TRIM11Q96F44 468 aa10.62□□□□□ -0.71
SYNE1-232ENST00000535081 SCHIP1Q9P0W5 487 aaPredicted RBP10.62□□□□□ -0.71
SYNE1-232ENST00000535081 NOD1Q9Y239 953 aa10.62□□□□□ -0.71
SYNE1-232ENST00000535081 SKIP12755 728 aa10.61□□□□□ -0.71
SYNE1-232ENST00000535081 ZDHHC1Q8WTX9 485 aa10.61□□□□□ -0.71
SYNE1-232ENST00000535081 PSME1Q06323 249 aa10.6□□□□□ -0.71
SYNE1-232ENST00000535081 PLVAPQ9BX97 442 aa10.6□□□□□ -0.71
SYNE1-232ENST00000535081 ZNF358Q9NW07 568 aa10.6□□□□□ -0.71
SYNE1-232ENST00000535081 ELOA3CA0A087WX78 387 aaPredicted RBP10.59□□□□□ -0.71
SYNE1-232ENST00000535081 ELOA3DA6NLF2 546 aaPredicted RBP10.59□□□□□ -0.71
SYNE1-232ENST00000535081 LZTS3O60299 673 aaPredicted RBP10.59□□□□□ -0.71
SYNE1-232ENST00000535081 ELOA3BQ3SY89 546 aa10.59□□□□□ -0.71
SYNE1-232ENST00000535081 SERBP1Q8NC51 408 aaKnown RBP eCLIP10.59□□□□□ -0.71
SYNE1-232ENST00000535081 ELOA3Q8NG57 546 aa10.59□□□□□ -0.71
SYNE1-232ENST00000535081 L3MBTL2Q969R5 705 aa10.59□□□□□ -0.71
SYNE1-232ENST00000535081 SPATA31C1P0DKV0 1188 aa10.58□□□□□ -0.72
SYNE1-232ENST00000535081 NCOA4Q13772 614 aa10.58□□□□□ -0.72
SYNE1-232ENST00000535081 TEAD4Q15561 434 aa10.58□□□□□ -0.72
SYNE1-232ENST00000535081 SYT9Q86SS6 491 aa10.58□□□□□ -0.72
SYNE1-232ENST00000535081 NFATC2IPQ8NCF5 419 aa10.58□□□□□ -0.72
SYNE1-232ENST00000535081 COG6Q9Y2V7 657 aa10.58□□□□□ -0.72
SYNE1-232ENST00000535081 EPHA4P54764 986 aa10.57□□□□□ -0.72
SYNE1-232ENST00000535081 LRRC69Q6ZNQ3 347 aa10.57□□□□□ -0.72
SYNE1-232ENST00000535081 ALG2Q9H553 416 aa10.57□□□□□ -0.72
SYNE1-232ENST00000535081 EML1O00423 815 aa10.56□□□□□ -0.72
SYNE1-232ENST00000535081 ALAS2P22557 587 aa10.56□□□□□ -0.72
SYNE1-232ENST00000535081 NOS2P35228 1153 aa10.56□□□□□ -0.72
SYNE1-232ENST00000535081 DOC2BQ14184 412 aa10.56□□□□□ -0.72
SYNE1-232ENST00000535081 SLC9A9Q8IVB4 645 aa10.56□□□□□ -0.72
SYNE1-232ENST00000535081 MDFIQ99750 246 aa10.56□□□□□ -0.72
SYNE1-232ENST00000535081 GPC6Q9Y625 555 aaPredicted RBP10.56□□□□□ -0.72
SYNE1-232ENST00000535081 ITGB7P26010 798 aa10.55□□□□□ -0.72
SYNE1-232ENST00000535081 GATA4P43694 442 aa10.55□□□□□ -0.72
SYNE1-232ENST00000535081 ZNF232Q9UNY5 417 aa10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms