RNA–Protein interactions for RNA: ENST00000534172.1

CSMD3-210, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 5

Gene CSMD3, Length 2,486 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-210ENST00000534172 RNF217Q8TC41 542 aa6.01□□□□□ -1.45
CSMD3-210ENST00000534172 ZDHHC3Q9NYG2 299 aa6.01□□□□□ -1.45
CSMD3-210ENST00000534172 IQSEC3Q9UPP2 1182 aaPredicted RBP6.01□□□□□ -1.45
CSMD3-210ENST00000534172 ABCC9O60706 1549 aa6□□□□□ -1.45
CSMD3-210ENST00000534172 PRMT3O60678 531 aa6□□□□□ -1.45
CSMD3-210ENST00000534172 CTSOP43234 321 aaPredicted RBP6□□□□□ -1.45
CSMD3-210ENST00000534172 OCLNQ16625 522 aa6□□□□□ -1.45
CSMD3-210ENST00000534172 ZFP42Q96MM3 310 aa6□□□□□ -1.45
CSMD3-210ENST00000534172 TATP17735 454 aaPredicted RBP6□□□□□ -1.45
CSMD3-210ENST00000534172 NOS2P35228 1153 aa6□□□□□ -1.45
CSMD3-210ENST00000534172 TSPAN10Q9H1Z9 355 aaPredicted RBP6□□□□□ -1.45
CSMD3-210ENST00000534172 GNEQ9Y223 722 aaKnown RBP6□□□□□ -1.45
CSMD3-210ENST00000534172 NBPF10Q6P3W6 841 aaKnown RBP5.99□□□□□ -1.45
CSMD3-210ENST00000534172 PRIMPOLQ96LW4 560 aa5.99□□□□□ -1.45
CSMD3-210ENST00000534172 C2orf49Q9BVC5 232 aaPredicted RBP5.99□□□□□ -1.45
CSMD3-210ENST00000534172 MAN1A2O60476 641 aa5.99□□□□□ -1.45
CSMD3-210ENST00000534172 EGFL7Q9UHF1 273 aa5.99□□□□□ -1.45
CSMD3-210ENST00000534172 ZNF232Q9UNY5 417 aa5.99□□□□□ -1.45
CSMD3-210ENST00000534172 A0A1B0GTH6 734 aa5.98□□□□□ -1.45
CSMD3-210ENST00000534172 LBRQ14739 615 aaKnown RBP5.98□□□□□ -1.45
CSMD3-210ENST00000534172 GMCL1Q96IK5 515 aa5.98□□□□□ -1.45
CSMD3-210ENST00000534172 TRIM47Q96LD4 638 aa5.98□□□□□ -1.45
CSMD3-210ENST00000534172 STAU1O95793 577 aaKnown RBP5.98□□□□□ -1.45
CSMD3-210ENST00000534172 BMP1P13497 986 aa5.98□□□□□ -1.45
CSMD3-210ENST00000534172 TIMMDC1Q9NPL8 285 aa5.98□□□□□ -1.45
CSMD3-210ENST00000534172 ANKIB1Q9P2G1 1089 aa5.98□□□□□ -1.45
CSMD3-210ENST00000534172 ST8SIA5O15466 376 aa5.97□□□□□ -1.45
CSMD3-210ENST00000534172 C4orf17Q53FE4 359 aa5.97□□□□□ -1.45
CSMD3-210ENST00000534172 L3MBTL2Q969R5 705 aa5.97□□□□□ -1.45
CSMD3-210ENST00000534172 DYRK1BQ9Y463 629 aa5.97□□□□□ -1.45
CSMD3-210ENST00000534172 C21orf2O43822 256 aa5.97□□□□□ -1.45
CSMD3-210ENST00000534172 POU4F2Q12837 409 aa5.97□□□□□ -1.45
CSMD3-210ENST00000534172 SF3B2Q13435 895 aaKnown RBP5.97□□□□□ -1.45
CSMD3-210ENST00000534172 CHMP7Q8WUX9 453 aaPredicted RBP5.97□□□□□ -1.45
CSMD3-210ENST00000534172 MYO19Q96H55 970 aa5.97□□□□□ -1.45
CSMD3-210ENST00000534172 NEUROD4Q9HD90 331 aa5.97□□□□□ -1.45
CSMD3-210ENST00000534172 EML1O00423 815 aa5.96□□□□□ -1.46
CSMD3-210ENST00000534172 RTN1Q16799 776 aa5.96□□□□□ -1.46
CSMD3-210ENST00000534172 PRICKLE2Q7Z3G6 844 aa5.96□□□□□ -1.46
CSMD3-210ENST00000534172 TXNDC2Q86VQ3 553 aa5.96□□□□□ -1.46
CSMD3-210ENST00000534172 PLA2G4AP47712 749 aa5.96□□□□□ -1.46
CSMD3-210ENST00000534172 FKBP5Q13451 457 aaPredicted RBP5.96□□□□□ -1.46
CSMD3-210ENST00000534172 AEBP1Q8IUX7 1158 aa5.96□□□□□ -1.46
CSMD3-210ENST00000534172 PGBD3Q8N328 593 aa5.96□□□□□ -1.46
CSMD3-210ENST00000534172 H7C1W4 665 aa5.95□□□□□ -1.46
CSMD3-210ENST00000534172 C16orf46Q6P387 395 aa5.95□□□□□ -1.46
CSMD3-210ENST00000534172 ZNF295-AS1Q8N0V1 137 aa5.95□□□□□ -1.46
CSMD3-210ENST00000534172 FIGNL2A6NMB9 653 aa5.94□□□□□ -1.46
CSMD3-210ENST00000534172 F11P03951 625 aa5.94□□□□□ -1.46
CSMD3-210ENST00000534172 ABTB2Q8N961 1025 aa5.94□□□□□ -1.46
CSMD3-210ENST00000534172 FAM13BQ9NYF5 915 aa5.94□□□□□ -1.46
CSMD3-210ENST00000534172 SLAIN2Q9P270 581 aa5.94□□□□□ -1.46
CSMD3-210ENST00000534172 PHLDB3Q6NSJ2 640 aa5.94□□□□□ -1.46
CSMD3-210ENST00000534172 RHPN1Q8TCX5 695 aa5.94□□□□□ -1.46
CSMD3-210ENST00000534172 ZDHHC1Q8WTX9 485 aa5.94□□□□□ -1.46
CSMD3-210ENST00000534172 DNMT3LQ9UJW3 386 aa5.94□□□□□ -1.46
CSMD3-210ENST00000534172 C11orf91Q3C1V1 193 aa5.93□□□□□ -1.46
CSMD3-210ENST00000534172 ALKBH2Q6NS38 261 aa5.93□□□□□ -1.46
CSMD3-210ENST00000534172 NLRP8Q86W28 1048 aa5.93□□□□□ -1.46
CSMD3-210ENST00000534172 ALDH16A1Q8IZ83 802 aa5.93□□□□□ -1.46
CSMD3-210ENST00000534172 AIDAQ96BJ3 306 aa5.93□□□□□ -1.46
CSMD3-210ENST00000534172 C11orf95C9JLR9 678 aaPredicted RBP5.93□□□□□ -1.46
CSMD3-210ENST00000534172 BRD2P25440 801 aaKnown RBP5.93□□□□□ -1.46
CSMD3-210ENST00000534172 MSX1P28360 303 aa5.93□□□□□ -1.46
CSMD3-210ENST00000534172 TBCELQ5QJ74 424 aa5.93□□□□□ -1.46
CSMD3-210ENST00000534172 HELQQ8TDG4 1101 aa5.93□□□□□ -1.46
CSMD3-210ENST00000534172 PHACTR1Q9C0D0 580 aa5.93□□□□□ -1.46
CSMD3-210ENST00000534172 FAM13AO94988 1023 aa5.92□□□□□ -1.46
CSMD3-210ENST00000534172 EFHC2Q5JST6 749 aa5.92□□□□□ -1.46
CSMD3-210ENST00000534172 FIGNL1Q6PIW4 674 aa5.92□□□□□ -1.46
CSMD3-210ENST00000534172 CRISPLD1Q9H336 500 aa5.92□□□□□ -1.46
CSMD3-210ENST00000534172 GJA3Q9Y6H8 435 aa5.92□□□□□ -1.46
CSMD3-210ENST00000534172 USP3Q9Y6I4 520 aa5.92□□□□□ -1.46
CSMD3-210ENST00000534172 PHKA2P46019 1235 aa5.92□□□□□ -1.46
CSMD3-210ENST00000534172 BICDL1Q6ZP65 573 aa5.92□□□□□ -1.46
CSMD3-210ENST00000534172 NPAS3Q8IXF0 933 aa5.92□□□□□ -1.46
CSMD3-210ENST00000534172 GMPR2Q9P2T1 348 aaKnown RBP5.92□□□□□ -1.46
CSMD3-210ENST00000534172 HCN4Q9Y3Q4 1203 aa5.92□□□□□ -1.46
CSMD3-210ENST00000534172 SLC35F4A4IF30 521 aa5.91□□□□□ -1.46
CSMD3-210ENST00000534172 CARNS1A5YM72 827 aa5.91□□□□□ -1.46
CSMD3-210ENST00000534172 FKBP4Q02790 459 aaKnown RBP eCLIP5.91□□□□□ -1.46
CSMD3-210ENST00000534172 IER5Q5VY09 327 aa5.91□□□□□ -1.46
CSMD3-210ENST00000534172 FOXR1Q6PIV2 292 aa5.91□□□□□ -1.46
CSMD3-210ENST00000534172 DACH1Q9UI36 760 aa5.91□□□□□ -1.46
CSMD3-210ENST00000534172 IVNS1ABPQ9Y6Y0 642 aa5.91□□□□□ -1.46
CSMD3-210ENST00000534172 RHOQP17081 205 aa5.91□□□□□ -1.46
CSMD3-210ENST00000534172 GTF3C2Q8WUA4 911 aaPredicted RBP5.91□□□□□ -1.46
CSMD3-210ENST00000534172 NGLY1Q96IV0 654 aa5.91□□□□□ -1.46
CSMD3-210ENST00000534172 RPLP1P05386 114 aaKnown RBP5.9□□□□□ -1.46
CSMD3-210ENST00000534172 NPR3P17342 541 aa5.9□□□□□ -1.46
CSMD3-210ENST00000534172 PTSQ03393 145 aa5.9□□□□□ -1.46
CSMD3-210ENST00000534172 MKNK1Q9BUB5 465 aa5.9□□□□□ -1.46
CSMD3-210ENST00000534172 STIM2Q9P246 746 aa5.9□□□□□ -1.46
CSMD3-210ENST00000534172 ICMTO60725 284 aa5.9□□□□□ -1.47
CSMD3-210ENST00000534172 LGR5O75473 907 aa5.9□□□□□ -1.47
CSMD3-210ENST00000534172 ARSJQ5FYB0 599 aaPredicted RBP5.9□□□□□ -1.47
CSMD3-210ENST00000534172 SAMD5Q5TGI4 173 aa5.9□□□□□ -1.47
CSMD3-210ENST00000534172 QTRT2Q9H974 415 aaKnown RBP5.9□□□□□ -1.47
CSMD3-210ENST00000534172 C11orf16Q9NQ32 467 aa5.9□□□□□ -1.47
CSMD3-210ENST00000534172 PARP3Q9Y6F1 533 aa5.9□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms