RNA–Protein interactions for RNA: ENST00000534082.1

CD44-237, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 564 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-237ENST00000534082 MAMSTRQ6ZN01 415 aa9.3□□□□□ -0.92
CD44-237ENST00000534082 SCUBE2Q9NQ36 999 aa9.3□□□□□ -0.92
CD44-237ENST00000534082 PIM2Q9P1W9 311 aa9.3□□□□□ -0.92
CD44-237ENST00000534082 CGNL1Q0VF96 1302 aa9.3□□□□□ -0.92
CD44-237ENST00000534082 PCDH11XQ9BZA7 1347 aa9.3□□□□□ -0.92
CD44-237ENST00000534082 PCDH11YQ9BZA8 1340 aa9.3□□□□□ -0.92
CD44-237ENST00000534082 CD163L1Q9NR16 1453 aa9.29□□□□□ -0.92
CD44-237ENST00000534082 MAP2P11137 1827 aaKnown RBP9.29□□□□□ -0.92
CD44-237ENST00000534082 CNTNAP1P78357 1384 aa9.29□□□□□ -0.92
CD44-237ENST00000534082 KDM6AO15550 1401 aaPredicted RBP9.29□□□□□ -0.92
CD44-237ENST00000534082 EDC4Q6P2E9 1401 aaKnown RBP9.29□□□□□ -0.92
CD44-237ENST00000534082 LOC102724428A0A0B4J2F2 783 aa9.28□□□□□ -0.92
CD44-237ENST00000534082 GLTPD2A6NH11 291 aa9.28□□□□□ -0.92
CD44-237ENST00000534082 HOXC9P31274 260 aa9.28□□□□□ -0.92
CD44-237ENST00000534082 LBX1P52954 281 aa9.28□□□□□ -0.92
CD44-237ENST00000534082 SIK1P57059 783 aa9.28□□□□□ -0.92
CD44-237ENST00000534082 TMF1P82094 1093 aa9.28□□□□□ -0.92
CD44-237ENST00000534082 RASSF7Q02833 373 aa9.28□□□□□ -0.92
CD44-237ENST00000534082 NLGN1Q8N2Q7 840 aa9.28□□□□□ -0.92
CD44-237ENST00000534082 USHBP1Q8N6Y0 703 aa9.28□□□□□ -0.92
CD44-237ENST00000534082 RAPGEF4Q8WZA2 1011 aa9.28□□□□□ -0.92
CD44-237ENST00000534082 ITGB4P16144 1822 aa9.28□□□□□ -0.92
CD44-237ENST00000534082 MAP3K19Q56UN5 1328 aa9.28□□□□□ -0.92
CD44-237ENST00000534082 TIAM2Q8IVF5 1701 aa9.28□□□□□ -0.92
CD44-237ENST00000534082 SBF1O95248 1867 aa9.28□□□□□ -0.92
CD44-237ENST00000534082 ITPK1Q13572 414 aa9.27□□□□□ -0.93
CD44-237ENST00000534082 PIGBQ92521 554 aa9.27□□□□□ -0.93
CD44-237ENST00000534082 PARP3Q9Y6F1 533 aa9.27□□□□□ -0.93
CD44-237ENST00000534082 CCDC85CA6NKD9 419 aa9.26□□□□□ -0.93
CD44-237ENST00000534082 TATP17735 454 aaPredicted RBP9.26□□□□□ -0.93
CD44-237ENST00000534082 RGS19P49795 217 aa9.26□□□□□ -0.93
CD44-237ENST00000534082 MKRN3Q13064 507 aaKnown RBP9.26□□□□□ -0.93
CD44-237ENST00000534082 PDAP1Q13442 181 aaKnown RBP9.26□□□□□ -0.93
CD44-237ENST00000534082 RTL1A6NKG5 1358 aa9.25□□□□□ -0.93
CD44-237ENST00000534082 SMG6Q86US8 1419 aaKnown RBP9.25□□□□□ -0.93
CD44-237ENST00000534082 CYP27B1O15528 508 aa9.25□□□□□ -0.93
CD44-237ENST00000534082 HSPA8P11142 646 aaKnown RBP9.25□□□□□ -0.93
CD44-237ENST00000534082 GYS1P13807 737 aa9.25□□□□□ -0.93
CD44-237ENST00000534082 LMNB1P20700 586 aa9.25□□□□□ -0.93
CD44-237ENST00000534082 AMPHP49418 695 aa9.25□□□□□ -0.93
CD44-237ENST00000534082 NBPF6Q5VWK0 638 aa9.25□□□□□ -0.93
CD44-237ENST00000534082 HDGFL2Q7Z4V5 671 aaPredicted RBP9.25□□□□□ -0.93
CD44-237ENST00000534082 NBPF4Q96M43 638 aa9.25□□□□□ -0.93
CD44-237ENST00000534082 WBP1LQ9NX94 342 aa9.25□□□□□ -0.93
CD44-237ENST00000534082 POTECB2RU33 542 aa9.24□□□□□ -0.93
CD44-237ENST00000534082 CHRNA5P30532 468 aa9.24□□□□□ -0.93
CD44-237ENST00000534082 ATP6V1AP38606 617 aa9.24□□□□□ -0.93
CD44-237ENST00000534082 IRX5P78411 483 aaPredicted RBP9.24□□□□□ -0.93
CD44-237ENST00000534082 TRAPPC3LQ5T215 181 aa9.24□□□□□ -0.93
CD44-237ENST00000534082 RTCBQ9Y3I0 505 aaKnown RBP9.24□□□□□ -0.93
CD44-237ENST00000534082 A0A1W2PP64 1363 aa9.24□□□□□ -0.93
CD44-237ENST00000534082 TNRC18O15417 2968 aaPredicted RBP9.23□□□□□ -0.93
CD44-237ENST00000534082 VEGFBP49765 207 aa9.23□□□□□ -0.93
CD44-237ENST00000534082 TMC1Q8TDI8 760 aa9.23□□□□□ -0.93
CD44-237ENST00000534082 OCEL1Q9H607 264 aa9.23□□□□□ -0.93
CD44-237ENST00000534082 KDRP35968 1356 aa9.23□□□□□ -0.93
CD44-237ENST00000534082 VIRMAQ69YN4 1812 aaKnown RBP9.22□□□□□ -0.93
CD44-237ENST00000534082 RFC4P35249 363 aa9.22□□□□□ -0.93
CD44-237ENST00000534082 ARHGEF1Q92888 912 aaKnown RBP9.22□□□□□ -0.93
CD44-237ENST00000534082 TMOD3Q9NYL9 352 aa9.22□□□□□ -0.93
CD44-237ENST00000534082 ASAP1Q9ULH1 1129 aa9.22□□□□□ -0.93
CD44-237ENST00000534082 FBLN1P23142 703 aa9.21□□□□□ -0.94
CD44-237ENST00000534082 DDR1Q08345 913 aa9.21□□□□□ -0.94
CD44-237ENST00000534082 COG3Q96JB2 828 aa9.21□□□□□ -0.94
CD44-237ENST00000534082 PDE4DIPQ5VU43 2346 aa9.21□□□□□ -0.94
CD44-237ENST00000534082 COL5A3P25940 1745 aaPredicted RBP9.2□□□□□ -0.94
CD44-237ENST00000534082 CFAP44Q96MT7 982 aa9.2□□□□□ -0.94
CD44-237ENST00000534082 SLC12A5Q9H2X9 1139 aa9.2□□□□□ -0.94
CD44-237ENST00000534082 TERF2IPQ9NYB0 399 aa9.2□□□□□ -0.94
CD44-237ENST00000534082 PASKQ96RG2 1323 aa9.2□□□□□ -0.94
CD44-237ENST00000534082 CNTNAP4Q9C0A0 1308 aa9.2□□□□□ -0.94
CD44-237ENST00000534082 NFKBIEO00221 500 aa9.19□□□□□ -0.94
CD44-237ENST00000534082 RRS1Q15050 365 aaKnown RBP9.19□□□□□ -0.94
CD44-237ENST00000534082 NKX1-1Q15270 411 aaPredicted RBP9.19□□□□□ -0.94
CD44-237ENST00000534082 DPY19L2Q6NUT2 758 aa9.19□□□□□ -0.94
CD44-237ENST00000534082 ATG3Q9NT62 314 aa9.19□□□□□ -0.94
CD44-237ENST00000534082 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.19□□□□□ -0.94
CD44-237ENST00000534082 ROCK2O75116 1388 aaKnown RBP9.19□□□□□ -0.94
CD44-237ENST00000534082 ZNF831Q5JPB2 1677 aa9.19□□□□□ -0.94
CD44-237ENST00000534082 TMEM88BA6NKF7 163 aa9.18□□□□□ -0.94
CD44-237ENST00000534082 RPS6KA4O75676 772 aa9.18□□□□□ -0.94
CD44-237ENST00000534082 MAP2K1Q02750 393 aaPredicted RBP9.18□□□□□ -0.94
CD44-237ENST00000534082 RC3H1Q5TC82 1133 aaKnown RBP9.18□□□□□ -0.94
CD44-237ENST00000534082 SRP68Q9UHB9 627 aaKnown RBP9.18□□□□□ -0.94
CD44-237ENST00000534082 DLEC1Q9Y238 1755 aa9.18□□□□□ -0.94
CD44-237ENST00000534082 THSD7BQ9C0I4 1608 aa9.17□□□□□ -0.94
CD44-237ENST00000534082 INSRP06213 1382 aa9.17□□□□□ -0.94
CD44-237ENST00000534082 USP42Q9H9J4 1324 aaKnown RBP9.17□□□□□ -0.94
CD44-237ENST00000534082 POLRMTO00411 1230 aaKnown RBP9.17□□□□□ -0.94
CD44-237ENST00000534082 LDHDQ86WU2 507 aa9.17□□□□□ -0.94
CD44-237ENST00000534082 SLC4A9Q96Q91 983 aa9.17□□□□□ -0.94
CD44-237ENST00000534082 NCAPD2Q15021 1401 aa9.16□□□□□ -0.94
CD44-237ENST00000534082 RASSF10A6NK89 507 aa9.16□□□□□ -0.94
CD44-237ENST00000534082 SLAIN1Q8ND83 568 aa9.16□□□□□ -0.94
CD44-237ENST00000534082 FAM163AQ96GL9 167 aaPredicted RBP9.16□□□□□ -0.94
CD44-237ENST00000534082 SPG7Q9UQ90 795 aa9.16□□□□□ -0.94
CD44-237ENST00000534082 CCDC88AQ3V6T2 1871 aa9.15□□□□□ -0.94
CD44-237ENST00000534082 FLT4P35916 1363 aa9.15□□□□□ -0.94
CD44-237ENST00000534082 RIOK3O14730 519 aaKnown RBP9.15□□□□□ -0.94
CD44-237ENST00000534082 DEFB115Q30KQ5 88 aa9.15□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms