RNA–Protein interactions for RNA: ENST00000533915.5

CMTM1-218, Transcript of CKLF like MARVEL transmembrane domain containing 1, humanhuman

TSL 1 (best)

Gene CMTM1, Length 899 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM1-218ENST00000533915 NUP188Q5SRE5 1749 aa18.17■□□□□ 0.5
CMTM1-218ENST00000533915 TJP1Q07157 1748 aa18.16■□□□□ 0.5
CMTM1-218ENST00000533915 TWISTNBQ3B726 338 aaPredicted RBP18.16■□□□□ 0.5
CMTM1-218ENST00000533915 SPINK5Q9NQ38 1064 aaPredicted RBP18.16■□□□□ 0.5
CMTM1-218ENST00000533915 USP16Q9Y5T5 823 aa18.16■□□□□ 0.5
CMTM1-218ENST00000533915 ERBB4Q15303 1308 aa18.16■□□□□ 0.5
CMTM1-218ENST00000533915 C4BP0C0L5 1744 aa18.15■□□□□ 0.5
CMTM1-218ENST00000533915 COL5A3P25940 1745 aaPredicted RBP18.15■□□□□ 0.5
CMTM1-218ENST00000533915 GNPATO15228 680 aa18.15■□□□□ 0.5
CMTM1-218ENST00000533915 EIF2S2P20042 333 aaKnown RBP18.15■□□□□ 0.5
CMTM1-218ENST00000533915 EXOSC9Q06265 439 aaKnown RBP18.15■□□□□ 0.5
CMTM1-218ENST00000533915 SLC15A2Q16348 729 aa18.15■□□□□ 0.5
CMTM1-218ENST00000533915 HDGFL1Q5TGJ6 251 aa18.15■□□□□ 0.5
CMTM1-218ENST00000533915 CDCA7LQ96GN5 454 aa18.15■□□□□ 0.5
CMTM1-218ENST00000533915 RTCBQ9Y3I0 505 aaKnown RBP18.15■□□□□ 0.5
CMTM1-218ENST00000533915 LAMB4A4D0S4 1761 aa18.14■□□□□ 0.5
CMTM1-218ENST00000533915 ELL2O00472 640 aaPredicted RBP18.14■□□□□ 0.49
CMTM1-218ENST00000533915 CT47B1P0C2W7 299 aaPredicted RBP18.14■□□□□ 0.49
CMTM1-218ENST00000533915 ADRA2BP18089 450 aa18.14■□□□□ 0.49
CMTM1-218ENST00000533915 CCDC30Q5VVM6 783 aa18.14■□□□□ 0.49
CMTM1-218ENST00000533915 TRMT2AQ8IZ69 625 aaKnown RBP18.14■□□□□ 0.49
CMTM1-218ENST00000533915 C8orf58Q8NAV2 365 aa18.14■□□□□ 0.49
CMTM1-218ENST00000533915 AKT1S1Q96B36 256 aa18.14■□□□□ 0.49
CMTM1-218ENST00000533915 RPS6KA4O75676 772 aa18.13■□□□□ 0.49
CMTM1-218ENST00000533915 SSFA2P28290 1259 aa18.13■□□□□ 0.49
CMTM1-218ENST00000533915 KRT24Q2M2I5 525 aa18.13■□□□□ 0.49
CMTM1-218ENST00000533915 ZNF428Q96B54 188 aa18.13■□□□□ 0.49
CMTM1-218ENST00000533915 A0A087WZG4 1122 aa18.12■□□□□ 0.49
CMTM1-218ENST00000533915 PRAMEF22A3QJZ6 481 aa18.12■□□□□ 0.49
CMTM1-218ENST00000533915 CANXP27824 592 aaKnown RBP18.12■□□□□ 0.49
CMTM1-218ENST00000533915 IL6STP40189 918 aaPredicted RBP18.12■□□□□ 0.49
CMTM1-218ENST00000533915 INTS5Q6P9B9 1019 aaKnown RBP18.12■□□□□ 0.49
CMTM1-218ENST00000533915 STK31Q9BXU1 1019 aa18.12■□□□□ 0.49
CMTM1-218ENST00000533915 DBF4Q9UBU7 674 aaPredicted RBP18.12■□□□□ 0.49
CMTM1-218ENST00000533915 A1BGP04217 495 aa18.11■□□□□ 0.49
CMTM1-218ENST00000533915 ZNF827Q17R98 1081 aa18.11■□□□□ 0.49
CMTM1-218ENST00000533915 TRAPPC3LQ5T215 181 aa18.11■□□□□ 0.49
CMTM1-218ENST00000533915 MYH14Q7Z406 1995 aaKnown RBP18.11■□□□□ 0.49
CMTM1-218ENST00000533915 TSPYL6Q8N831 410 aa18.1■□□□□ 0.49
CMTM1-218ENST00000533915 ANO8Q9HCE9 1232 aaPredicted RBP18.1■□□□□ 0.49
CMTM1-218ENST00000533915 ZBTB1Q9Y2K1 713 aa18.1■□□□□ 0.49
CMTM1-218ENST00000533915 MSH5O43196 834 aa18.09■□□□□ 0.49
CMTM1-218ENST00000533915 RFC4P35249 363 aa18.09■□□□□ 0.49
CMTM1-218ENST00000533915 NECTIN2Q92692 538 aa18.09■□□□□ 0.49
CMTM1-218ENST00000533915 DDX21Q9NR30 783 aaKnown RBP eCLIP18.09■□□□□ 0.49
CMTM1-218ENST00000533915 HYPKQ9NX55 129 aa18.09■□□□□ 0.49
CMTM1-218ENST00000533915 ZNF330Q9Y3S2 320 aaPredicted RBP18.09■□□□□ 0.49
CMTM1-218ENST00000533915 CACNA1FO60840 1977 aa18.08■□□□□ 0.49
CMTM1-218ENST00000533915 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP18.08■□□□□ 0.48
CMTM1-218ENST00000533915 VAMP4O75379 141 aa18.08■□□□□ 0.48
CMTM1-218ENST00000533915 PHF14O94880 888 aa18.08■□□□□ 0.48
CMTM1-218ENST00000533915 UBR3Q6ZT12 1888 aa18.07■□□□□ 0.48
CMTM1-218ENST00000533915 QSER1Q2KHR3 1735 aa18.07■□□□□ 0.48
CMTM1-218ENST00000533915 ZPR1O75312 459 aa18.07■□□□□ 0.48
CMTM1-218ENST00000533915 MYL6BP14649 208 aa18.07■□□□□ 0.48
CMTM1-218ENST00000533915 EIF5P55010 431 aaKnown RBP18.07■□□□□ 0.48
CMTM1-218ENST00000533915 R3HDM1Q15032 1099 aaKnown RBP18.07■□□□□ 0.48
CMTM1-218ENST00000533915 CHPF2Q9P2E5 772 aa18.07■□□□□ 0.48
CMTM1-218ENST00000533915 COL15A1P39059 1388 aa18.06■□□□□ 0.48
CMTM1-218ENST00000533915 ARXQ96QS3 562 aa18.06■□□□□ 0.48
CMTM1-218ENST00000533915 NBPF26B4DH59 902 aa18.05■□□□□ 0.48
CMTM1-218ENST00000533915 NBPF10Q6P3W6 841 aaKnown RBP18.05■□□□□ 0.48
CMTM1-218ENST00000533915 KIF6Q6ZMV9 814 aa18.05■□□□□ 0.48
CMTM1-218ENST00000533915 NBPF15Q8N660 670 aa18.05■□□□□ 0.48
CMTM1-218ENST00000533915 SLC16A10Q8TF71 515 aa18.05■□□□□ 0.48
CMTM1-218ENST00000533915 ARHGEF1Q92888 912 aaKnown RBP18.05■□□□□ 0.48
CMTM1-218ENST00000533915 PNPLA7Q6ZV29 1317 aa18.04■□□□□ 0.48
CMTM1-218ENST00000533915 ALDH1L2Q3SY69 923 aa18.04■□□□□ 0.48
CMTM1-218ENST00000533915 DDX58O95786 925 aaKnown RBP18.03■□□□□ 0.48
CMTM1-218ENST00000533915 SLC4A2P04920 1241 aa18.03■□□□□ 0.48
CMTM1-218ENST00000533915 PIP4K2AP48426 406 aaPredicted RBP18.03■□□□□ 0.48
CMTM1-218ENST00000533915 PDIA6Q15084 440 aa18.03■□□□□ 0.48
CMTM1-218ENST00000533915 DZIP3Q86Y13 1208 aaKnown RBP18.03■□□□□ 0.48
CMTM1-218ENST00000533915 COL23A1Q86Y22 540 aaPredicted RBP18.03■□□□□ 0.48
CMTM1-218ENST00000533915 ZNF652Q9Y2D9 606 aa18.03■□□□□ 0.48
CMTM1-218ENST00000533915 TUBGCP6Q96RT7 1819 aa18.02■□□□□ 0.48
CMTM1-218ENST00000533915 RGL2O15211 777 aa18.02■□□□□ 0.48
CMTM1-218ENST00000533915 NARFQ9UHQ1 456 aa18.02■□□□□ 0.48
CMTM1-218ENST00000533915 PSDA5PKW4 1024 aaPredicted RBP18.01■□□□□ 0.47
CMTM1-218ENST00000533915 PROSER3Q2NL68 480 aa18.01■□□□□ 0.47
CMTM1-218ENST00000533915 USP42Q9H9J4 1324 aaKnown RBP18■□□□□ 0.47
CMTM1-218ENST00000533915 ERVV-1B6SEH8 477 aa18■□□□□ 0.47
CMTM1-218ENST00000533915 ANXA1P04083 346 aa18■□□□□ 0.47
CMTM1-218ENST00000533915 AIMP1Q12904 312 aaKnown RBP18■□□□□ 0.47
CMTM1-218ENST00000533915 COPS6Q7L5N1 327 aa18■□□□□ 0.47
CMTM1-218ENST00000533915 NLGN1Q8N2Q7 840 aa18■□□□□ 0.47
CMTM1-218ENST00000533915 XAGE3Q8WTP9 111 aa18■□□□□ 0.47
CMTM1-218ENST00000533915 SMC4Q9NTJ3 1288 aa18■□□□□ 0.47
CMTM1-218ENST00000533915 TBC1D2BQ9UPU7 963 aa18■□□□□ 0.47
CMTM1-218ENST00000533915 TCERG1O14776 1098 aaKnown RBP17.99■□□□□ 0.47
CMTM1-218ENST00000533915 CLEC4GQ6UXB4 293 aa17.99■□□□□ 0.47
CMTM1-218ENST00000533915 AMIGO3Q86WK7 504 aa17.99■□□□□ 0.47
CMTM1-218ENST00000533915 MAP3K15Q6ZN16 1313 aa17.98■□□□□ 0.47
CMTM1-218ENST00000533915 USPL1Q5W0Q7 1092 aa17.98■□□□□ 0.47
CMTM1-218ENST00000533915 ANKRD13DQ6ZTN6 518 aa17.98■□□□□ 0.47
CMTM1-218ENST00000533915 SSH1Q8WYL5 1049 aa17.98■□□□□ 0.47
CMTM1-218ENST00000533915 MTFR1LQ9H019 292 aa17.98■□□□□ 0.47
CMTM1-218ENST00000533915 RARSP54136 660 aaKnown RBP17.97■□□□□ 0.47
CMTM1-218ENST00000533915 FLIIQ13045 1269 aa17.97■□□□□ 0.47
CMTM1-218ENST00000533915 HSP90AB3PQ58FF7 597 aa17.97■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms