RNA–Protein interactions for RNA: ENST00000532550.1

PHRF1-204, Transcript of PHD and ring finger domains 1, humanhuman

TSL 3

Gene PHRF1, Length 748 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-204ENST00000532550 FKBP8Q14318 412 aa22.83■■□□□ 1.25
PHRF1-204ENST00000532550 PLEKHF1Q96S99 279 aa22.83■■□□□ 1.25
PHRF1-204ENST00000532550 SIPA1L3O60292 1781 aaPredicted RBP22.83■■□□□ 1.24
PHRF1-204ENST00000532550 MYBBP1AQ9BQG0 1328 aaKnown RBP22.82■■□□□ 1.24
PHRF1-204ENST00000532550 KCNQ3O43525 872 aa22.82■■□□□ 1.24
PHRF1-204ENST00000532550 YBX3P16989 372 aaKnown RBP eCLIP22.82■■□□□ 1.24
PHRF1-204ENST00000532550 USPL1Q5W0Q7 1092 aa22.82■■□□□ 1.24
PHRF1-204ENST00000532550 MAPK8IP3Q9UPT6 1336 aa22.82■■□□□ 1.24
PHRF1-204ENST00000532550 TAF7Q15545 349 aaPredicted RBP22.81■■□□□ 1.24
PHRF1-204ENST00000532550 NARFQ9UHQ1 456 aa22.81■■□□□ 1.24
PHRF1-204ENST00000532550 C4AP0C0L4 1744 aa22.81■■□□□ 1.24
PHRF1-204ENST00000532550 GOLGB1Q14789 3259 aaKnown RBP22.81■■□□□ 1.24
PHRF1-204ENST00000532550 TGFB2P61812 414 aa22.8■■□□□ 1.24
PHRF1-204ENST00000532550 NFE2L2Q16236 605 aa22.8■■□□□ 1.24
PHRF1-204ENST00000532550 COL15A1P39059 1388 aa22.79■■□□□ 1.24
PHRF1-204ENST00000532550 A0A087WZG4 1122 aa22.79■■□□□ 1.24
PHRF1-204ENST00000532550 NPM2Q86SE8 214 aaKnown RBP22.79■■□□□ 1.24
PHRF1-204ENST00000532550 EIF5P55010 431 aaKnown RBP22.78■■□□□ 1.24
PHRF1-204ENST00000532550 SNRPA1P09661 255 aaKnown RBP22.77■■□□□ 1.24
PHRF1-204ENST00000532550 TM4SF1P30408 202 aa22.77■■□□□ 1.24
PHRF1-204ENST00000532550 WWC3Q9ULE0 1092 aa22.77■■□□□ 1.24
PHRF1-204ENST00000532550 ZNF330Q9Y3S2 320 aaPredicted RBP22.77■■□□□ 1.24
PHRF1-204ENST00000532550 A1BGP04217 495 aa22.76■■□□□ 1.23
PHRF1-204ENST00000532550 USP16Q9Y5T5 823 aa22.76■■□□□ 1.23
PHRF1-204ENST00000532550 A0A0G2JLW4 131 aa22.75■■□□□ 1.23
PHRF1-204ENST00000532550 IL6STP40189 918 aaPredicted RBP22.75■■□□□ 1.23
PHRF1-204ENST00000532550 DDR1Q08345 913 aa22.75■■□□□ 1.23
PHRF1-204ENST00000532550 PNISRQ8TF01 805 aaKnown RBP22.75■■□□□ 1.23
PHRF1-204ENST00000532550 MIS18AQ9NYP9 233 aa22.75■■□□□ 1.23
PHRF1-204ENST00000532550 DLG5Q8TDM6 1919 aa22.74■■□□□ 1.23
PHRF1-204ENST00000532550 PRKRIP1Q9H875 184 aaPredicted RBP22.74■■□□□ 1.23
PHRF1-204ENST00000532550 POLRMTO00411 1230 aaKnown RBP22.73■■□□□ 1.23
PHRF1-204ENST00000532550 RIPK4P57078 832 aa22.73■■□□□ 1.23
PHRF1-204ENST00000532550 WDR43Q15061 677 aaKnown RBP eCLIP22.73■■□□□ 1.23
PHRF1-204ENST00000532550 ZNF784Q8NCA9 323 aaPredicted RBP22.73■■□□□ 1.23
PHRF1-204ENST00000532550 DPEP1P16444 411 aa22.72■■□□□ 1.23
PHRF1-204ENST00000532550 NFIXQ14938 502 aa22.72■■□□□ 1.23
PHRF1-204ENST00000532550 BCL2L12Q9HB09 334 aa22.72■■□□□ 1.23
PHRF1-204ENST00000532550 TBC1D2BQ9UPU7 963 aa22.72■■□□□ 1.23
PHRF1-204ENST00000532550 KIF13BQ9NQT8 1826 aa22.72■■□□□ 1.23
PHRF1-204ENST00000532550 C10orf71Q711Q0 1435 aa22.72■■□□□ 1.23
PHRF1-204ENST00000532550 PRAMEF22A3QJZ6 481 aa22.71■■□□□ 1.23
PHRF1-204ENST00000532550 THUMPD2Q9BTF0 503 aaKnown RBP22.7■■□□□ 1.22
PHRF1-204ENST00000532550 PXDNLA1KZ92 1463 aa22.7■■□□□ 1.22
PHRF1-204ENST00000532550 SERPINB2P05120 415 aa22.69■■□□□ 1.22
PHRF1-204ENST00000532550 BICDL1Q6ZP65 573 aa22.69■■□□□ 1.22
PHRF1-204ENST00000532550 BCS1LQ9Y276 419 aa22.69■■□□□ 1.22
PHRF1-204ENST00000532550 N4BP2Q86UW6 1770 aaPredicted RBP22.68■■□□□ 1.22
PHRF1-204ENST00000532550 TMPOP42166 694 aaKnown RBP22.68■■□□□ 1.22
PHRF1-204ENST00000532550 PIP4K2AP48426 406 aaPredicted RBP22.67■■□□□ 1.22
PHRF1-204ENST00000532550 LMOD3Q0VAK6 560 aa22.67■■□□□ 1.22
PHRF1-204ENST00000532550 CCDC146Q8IYE0 955 aa22.67■■□□□ 1.22
PHRF1-204ENST00000532550 PIM2Q9P1W9 311 aa22.67■■□□□ 1.22
PHRF1-204ENST00000532550 DZIP3Q86Y13 1208 aaKnown RBP22.66■■□□□ 1.22
PHRF1-204ENST00000532550 RUNDC1Q96C34 613 aa22.66■■□□□ 1.22
PHRF1-204ENST00000532550 ADAMTS8Q9UP79 889 aa22.66■■□□□ 1.22
PHRF1-204ENST00000532550 KCNA3P22001 575 aa22.65■■□□□ 1.22
PHRF1-204ENST00000532550 EIF4A1P60842 406 aaKnown RBP22.65■■□□□ 1.22
PHRF1-204ENST00000532550 NEUROD2Q15784 382 aa22.65■■□□□ 1.22
PHRF1-204ENST00000532550 TBC1D9BQ66K14 1250 aa22.65■■□□□ 1.22
PHRF1-204ENST00000532550 GIGYF1O75420 1035 aaPredicted RBP22.64■■□□□ 1.21
PHRF1-204ENST00000532550 CAMTA2O94983 1202 aa22.64■■□□□ 1.21
PHRF1-204ENST00000532550 RRP7AQ9Y3A4 280 aaKnown RBP22.64■■□□□ 1.21
PHRF1-204ENST00000532550 CHRNA5P30532 468 aa22.63■■□□□ 1.21
PHRF1-204ENST00000532550 SETDB2Q96T68 719 aa22.63■■□□□ 1.21
PHRF1-204ENST00000532550 TSPYL4Q9UJ04 414 aa22.63■■□□□ 1.21
PHRF1-204ENST00000532550 KIAA1551Q9HCM1 1747 aa22.62■■□□□ 1.21
PHRF1-204ENST00000532550 AFDNP55196 1824 aaKnown RBP22.62■■□□□ 1.21
PHRF1-204ENST00000532550 ZNF316A6NFI3 1004 aaPredicted RBP22.62■■□□□ 1.21
PHRF1-204ENST00000532550 NBPF26B4DH59 902 aa22.62■■□□□ 1.21
PHRF1-204ENST00000532550 DALRD3Q5D0E6 543 aaKnown RBP22.62■■□□□ 1.21
PHRF1-204ENST00000532550 NBPF10Q6P3W6 841 aaKnown RBP22.62■■□□□ 1.21
PHRF1-204ENST00000532550 ARHGAP27Q6ZUM4 889 aa22.62■■□□□ 1.21
PHRF1-204ENST00000532550 NBPF15Q8N660 670 aa22.62■■□□□ 1.21
PHRF1-204ENST00000532550 BABAM1Q9NWV8 329 aa22.61■■□□□ 1.21
PHRF1-204ENST00000532550 ZNF652Q9Y2D9 606 aa22.61■■□□□ 1.21
PHRF1-204ENST00000532550 CLEC4GQ6UXB4 293 aa22.6■■□□□ 1.21
PHRF1-204ENST00000532550 KDM3BQ7LBC6 1761 aa22.59■■□□□ 1.21
PHRF1-204ENST00000532550 NPHP1O15259 732 aa22.59■■□□□ 1.21
PHRF1-204ENST00000532550 CARMIL3Q8ND23 1372 aa22.59■■□□□ 1.21
PHRF1-204ENST00000532550 H0YIN7 160 aa22.58■■□□□ 1.21
PHRF1-204ENST00000532550 NGEFQ8N5V2 710 aa22.58■■□□□ 1.21
PHRF1-204ENST00000532550 NRXN2Q9P2S2 1712 aa22.57■■□□□ 1.2
PHRF1-204ENST00000532550 C2CD5Q86YS7 1000 aa22.57■■□□□ 1.2
PHRF1-204ENST00000532550 BRCA1P38398 1863 aaKnown RBP22.56■■□□□ 1.2
PHRF1-204ENST00000532550 PRR5LQ6MZQ0 368 aa22.56■■□□□ 1.2
PHRF1-204ENST00000532550 BRIP1Q9BX63 1249 aa22.56■■□□□ 1.2
PHRF1-204ENST00000532550 TRIM35Q9UPQ4 493 aa22.56■■□□□ 1.2
PHRF1-204ENST00000532550 SCN7AQ01118 1682 aa22.55■■□□□ 1.2
PHRF1-204ENST00000532550 RGL2O15211 777 aa22.55■■□□□ 1.2
PHRF1-204ENST00000532550 PDE6BP35913 854 aa22.55■■□□□ 1.2
PHRF1-204ENST00000532550 CNBD1Q8NA66 436 aa22.55■■□□□ 1.2
PHRF1-204ENST00000532550 PDZRN3Q9UPQ7 1066 aa22.55■■□□□ 1.2
PHRF1-204ENST00000532550 LAS1LQ9Y4W2 734 aaKnown RBP22.55■■□□□ 1.2
PHRF1-204ENST00000532550 MYL6BP14649 208 aa22.54■■□□□ 1.2
PHRF1-204ENST00000532550 ST5P78524 1137 aa22.54■■□□□ 1.2
PHRF1-204ENST00000532550 CCDC24Q8N4L8 307 aa22.54■■□□□ 1.2
PHRF1-204ENST00000532550 EIF2S2P20042 333 aaKnown RBP22.53■■□□□ 1.2
PHRF1-204ENST00000532550 NBPF5PQ86XG9 351 aaPredicted RBP22.53■■□□□ 1.2
PHRF1-204ENST00000532550 TTLL6Q8N841 843 aa22.53■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms