RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 AFDNP55196 1824 aaKnown RBP14.2□□□□□ -0.14
CD44-227ENST00000528086 HTATSF1O43719 755 aaKnown RBP14.2□□□□□ -0.14
CD44-227ENST00000528086 NFE2L2Q16236 605 aa14.2□□□□□ -0.14
CD44-227ENST00000528086 CCDC184Q52MB2 194 aa14.2□□□□□ -0.14
CD44-227ENST00000528086 C10orf71Q711Q0 1435 aa14.19□□□□□ -0.14
CD44-227ENST00000528086 BTBD11A6QL63 1104 aa14.19□□□□□ -0.14
CD44-227ENST00000528086 TM4SF1P30408 202 aa14.19□□□□□ -0.14
CD44-227ENST00000528086 RFC4P35249 363 aa14.19□□□□□ -0.14
CD44-227ENST00000528086 EIF5P55010 431 aaKnown RBP14.19□□□□□ -0.14
CD44-227ENST00000528086 USP16Q9Y5T5 823 aa14.19□□□□□ -0.14
CD44-227ENST00000528086 NRXN2Q9P2S2 1712 aa14.18□□□□□ -0.14
CD44-227ENST00000528086 A1BGP04217 495 aa14.18□□□□□ -0.14
CD44-227ENST00000528086 NLGN1Q8N2Q7 840 aa14.18□□□□□ -0.14
CD44-227ENST00000528086 COL15A1P39059 1388 aa14.18□□□□□ -0.14
CD44-227ENST00000528086 PXDNLA1KZ92 1463 aa14.18□□□□□ -0.14
CD44-227ENST00000528086 ZEB1P37275 1124 aaPredicted RBP14.17□□□□□ -0.14
CD44-227ENST00000528086 PIP4K2AP48426 406 aaPredicted RBP14.17□□□□□ -0.14
CD44-227ENST00000528086 USPL1Q5W0Q7 1092 aa14.17□□□□□ -0.14
CD44-227ENST00000528086 TTC5Q8N0Z6 440 aa14.17□□□□□ -0.14
CD44-227ENST00000528086 SCN7AQ01118 1682 aa14.17□□□□□ -0.14
CD44-227ENST00000528086 NBPF26B4DH59 902 aa14.16□□□□□ -0.14
CD44-227ENST00000528086 KCNA3P22001 575 aa14.16□□□□□ -0.14
CD44-227ENST00000528086 CANXP27824 592 aaKnown RBP14.16□□□□□ -0.14
CD44-227ENST00000528086 TAF7Q15545 349 aaPredicted RBP14.16□□□□□ -0.14
CD44-227ENST00000528086 NBPF10Q6P3W6 841 aaKnown RBP14.16□□□□□ -0.14
CD44-227ENST00000528086 CCDC146Q8IYE0 955 aa14.16□□□□□ -0.14
CD44-227ENST00000528086 NBPF15Q8N660 670 aa14.16□□□□□ -0.14
CD44-227ENST00000528086 FMNL2Q96PY5 1086 aa14.16□□□□□ -0.14
CD44-227ENST00000528086 NARFQ9UHQ1 456 aa14.16□□□□□ -0.14
CD44-227ENST00000528086 ADAMTS8Q9UP79 889 aa14.16□□□□□ -0.14
CD44-227ENST00000528086 LAMB4A4D0S4 1761 aa14.15□□□□□ -0.14
CD44-227ENST00000528086 BCORQ6W2J9 1755 aa14.15□□□□□ -0.14
CD44-227ENST00000528086 POLRMTO00411 1230 aaKnown RBP14.15□□□□□ -0.14
CD44-227ENST00000528086 YY1P25490 414 aa14.15□□□□□ -0.14
CD44-227ENST00000528086 TMPOP42166 694 aaKnown RBP14.15□□□□□ -0.14
CD44-227ENST00000528086 NFIXQ14938 502 aa14.15□□□□□ -0.14
CD44-227ENST00000528086 RTF1Q92541 710 aaKnown RBP14.15□□□□□ -0.14
CD44-227ENST00000528086 WWC3Q9ULE0 1092 aa14.15□□□□□ -0.14
CD44-227ENST00000528086 STARD3NLO95772 234 aa14.14□□□□□ -0.15
CD44-227ENST00000528086 GPR162Q16538 588 aa14.14□□□□□ -0.15
CD44-227ENST00000528086 TRIM35Q9UPQ4 493 aa14.14□□□□□ -0.15
CD44-227ENST00000528086 RRP7AQ9Y3A4 280 aaKnown RBP14.14□□□□□ -0.15
CD44-227ENST00000528086 ANKRD31Q8N7Z5 1873 aa14.14□□□□□ -0.15
CD44-227ENST00000528086 CAMTA2O94983 1202 aa14.13□□□□□ -0.15
CD44-227ENST00000528086 EIF4A1P60842 406 aaKnown RBP14.13□□□□□ -0.15
CD44-227ENST00000528086 A0A0G2JLW4 131 aa14.12□□□□□ -0.15
CD44-227ENST00000528086 ZNF316A6NFI3 1004 aaPredicted RBP14.12□□□□□ -0.15
CD44-227ENST00000528086 IL6STP40189 918 aaPredicted RBP14.12□□□□□ -0.15
CD44-227ENST00000528086 RIPK4P57078 832 aa14.12□□□□□ -0.15
CD44-227ENST00000528086 TEX13AQ9BXU3 409 aaPredicted RBP14.12□□□□□ -0.15
CD44-227ENST00000528086 TBC1D2BQ9UPU7 963 aa14.12□□□□□ -0.15
CD44-227ENST00000528086 CARMIL3Q8ND23 1372 aa14.11□□□□□ -0.15
CD44-227ENST00000528086 GIGYF1O75420 1035 aaPredicted RBP14.11□□□□□ -0.15
CD44-227ENST00000528086 SNRPA1P09661 255 aaKnown RBP14.11□□□□□ -0.15
CD44-227ENST00000528086 DPEP1P16444 411 aa14.11□□□□□ -0.15
CD44-227ENST00000528086 PELP1Q8IZL8 1130 aaKnown RBP14.11□□□□□ -0.15
CD44-227ENST00000528086 ZPR1O75312 459 aa14.1□□□□□ -0.15
CD44-227ENST00000528086 TBC1D9BQ66K14 1250 aa14.1□□□□□ -0.15
CD44-227ENST00000528086 PARP3Q9Y6F1 533 aa14.1□□□□□ -0.15
CD44-227ENST00000528086 MAPK8IP3Q9UPT6 1336 aa14.1□□□□□ -0.15
CD44-227ENST00000528086 ARFGEF1Q9Y6D6 1849 aa14.09□□□□□ -0.15
CD44-227ENST00000528086 TGFB2P61812 414 aa14.09□□□□□ -0.15
CD44-227ENST00000528086 LRP10Q7Z4F1 713 aa14.09□□□□□ -0.15
CD44-227ENST00000528086 RUNDC1Q96C34 613 aa14.09□□□□□ -0.15
CD44-227ENST00000528086 DLEC1Q9Y238 1755 aa14.09□□□□□ -0.15
CD44-227ENST00000528086 COL11A2P13942 1736 aaPredicted RBP14.08□□□□□ -0.16
CD44-227ENST00000528086 DCAF8L1A6NGE4 600 aa14.08□□□□□ -0.16
CD44-227ENST00000528086 CHRNA5P30532 468 aa14.08□□□□□ -0.16
CD44-227ENST00000528086 KRT24Q2M2I5 525 aa14.08□□□□□ -0.16
CD44-227ENST00000528086 ZNF784Q8NCA9 323 aaPredicted RBP14.08□□□□□ -0.16
CD44-227ENST00000528086 PNNQ9H307 717 aaKnown RBP14.08□□□□□ -0.16
CD44-227ENST00000528086 NUP98P52948 1817 aa14.07□□□□□ -0.16
CD44-227ENST00000528086 SERPINB2P05120 415 aa14.07□□□□□ -0.16
CD44-227ENST00000528086 NEUROD2Q15784 382 aa14.07□□□□□ -0.16
CD44-227ENST00000528086 PDIA6Q15084 440 aa14.06□□□□□ -0.16
CD44-227ENST00000528086 BICDL1Q6ZP65 573 aa14.06□□□□□ -0.16
CD44-227ENST00000528086 CCDC24Q8N4L8 307 aa14.06□□□□□ -0.16
CD44-227ENST00000528086 ZNF330Q9Y3S2 320 aaPredicted RBP14.06□□□□□ -0.16
CD44-227ENST00000528086 A0A087WZG4 1122 aa14.05□□□□□ -0.16
CD44-227ENST00000528086 CHL1O00533 1208 aa14.05□□□□□ -0.16
CD44-227ENST00000528086 APAF1O14727 1248 aa14.05□□□□□ -0.16
CD44-227ENST00000528086 GRIN3BO60391 1043 aa14.05□□□□□ -0.16
CD44-227ENST00000528086 NEFMP07197 916 aa14.05□□□□□ -0.16
CD44-227ENST00000528086 WDR43Q15061 677 aaKnown RBP eCLIP14.05□□□□□ -0.16
CD44-227ENST00000528086 HLFQ16534 295 aa14.05□□□□□ -0.16
CD44-227ENST00000528086 PROSER3Q2NL68 480 aa14.05□□□□□ -0.16
CD44-227ENST00000528086 DZIP3Q86Y13 1208 aaKnown RBP14.05□□□□□ -0.16
CD44-227ENST00000528086 PNISRQ8TF01 805 aaKnown RBP14.05□□□□□ -0.16
CD44-227ENST00000528086 ADCY9O60503 1353 aa14.05□□□□□ -0.16
CD44-227ENST00000528086 PRR5LQ6MZQ0 368 aa14.04□□□□□ -0.16
CD44-227ENST00000528086 TTLL7Q6ZT98 887 aa14.04□□□□□ -0.16
CD44-227ENST00000528086 TSPYL4Q9UJ04 414 aa14.04□□□□□ -0.16
CD44-227ENST00000528086 SBF1O95248 1867 aa14.04□□□□□ -0.16
CD44-227ENST00000528086 SENP3-EIF4A1A0A087X0R7 540 aa14.03□□□□□ -0.16
CD44-227ENST00000528086 ZNF853P0CG23 659 aa14.03□□□□□ -0.16
CD44-227ENST00000528086 ANXA1P04083 346 aa14.02□□□□□ -0.17
CD44-227ENST00000528086 PRELPP51888 382 aa14.02□□□□□ -0.17
CD44-227ENST00000528086 BABAM1Q9NWV8 329 aa14.02□□□□□ -0.17
CD44-227ENST00000528086 BCS1LQ9Y276 419 aa14.02□□□□□ -0.17
CD44-227ENST00000528086 SLX4Q8IY92 1834 aa14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms