RNA–Protein interactions for RNA: ENST00000527326.1

CD44-225, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 718 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-225ENST00000527326 LOC102724159A0A0B4J2E5 919 aa7.08□□□□□ -1.28
CD44-225ENST00000527326 SPDYE5A6NIY4 337 aa7.08□□□□□ -1.28
CD44-225ENST00000527326 NOP2P46087 812 aaKnown RBP7.08□□□□□ -1.28
CD44-225ENST00000527326 CHAF1AQ13111 956 aaPredicted RBP7.08□□□□□ -1.28
CD44-225ENST00000527326 PWP2Q15269 919 aaKnown RBP7.08□□□□□ -1.28
CD44-225ENST00000527326 DIXDC1Q155Q3 683 aa7.08□□□□□ -1.28
CD44-225ENST00000527326 PTPRNQ16849 979 aa7.08□□□□□ -1.28
CD44-225ENST00000527326 ICE2Q659A1 982 aa7.08□□□□□ -1.28
CD44-225ENST00000527326 CLEC17AQ6ZS10 378 aa7.08□□□□□ -1.28
CD44-225ENST00000527326 HSCBQ8IWL3 235 aa7.08□□□□□ -1.28
CD44-225ENST00000527326 EHBP1Q8NDI1 1231 aa7.08□□□□□ -1.28
CD44-225ENST00000527326 RASSF4Q9H2L5 321 aa7.08□□□□□ -1.28
CD44-225ENST00000527326 MORC2Q9Y6X9 1032 aaPredicted RBP7.08□□□□□ -1.28
CD44-225ENST00000527326 POLA1P09884 1462 aaPredicted RBP7.08□□□□□ -1.28
CD44-225ENST00000527326 MIA2Q96PC5 1412 aa7.08□□□□□ -1.28
CD44-225ENST00000527326 NPC1L1Q9UHC9 1359 aa7.08□□□□□ -1.28
CD44-225ENST00000527326 CLASP1Q7Z460 1538 aa7.07□□□□□ -1.28
CD44-225ENST00000527326 KIF7Q2M1P5 1343 aa7.07□□□□□ -1.28
CD44-225ENST00000527326 PBRM1Q86U86 1689 aa7.07□□□□□ -1.28
CD44-225ENST00000527326 CCDC18Q5T9S5 1454 aa7.07□□□□□ -1.28
CD44-225ENST00000527326 GOLGA6L6A8MZA4 724 aa7.07□□□□□ -1.28
CD44-225ENST00000527326 GUCY2CP25092 1073 aa7.07□□□□□ -1.28
CD44-225ENST00000527326 DDIT3P35638 169 aa7.07□□□□□ -1.28
CD44-225ENST00000527326 RAB3GAP1Q15042 981 aa7.07□□□□□ -1.28
CD44-225ENST00000527326 NBPF11Q86T75 865 aa7.07□□□□□ -1.28
CD44-225ENST00000527326 SKAP1Q86WV1 359 aa7.07□□□□□ -1.28
CD44-225ENST00000527326 PIBF1Q8WXW3 757 aa7.07□□□□□ -1.28
CD44-225ENST00000527326 ATP13A2Q9NQ11 1180 aa7.07□□□□□ -1.28
CD44-225ENST00000527326 EVA1BQ9NVM1 165 aa7.07□□□□□ -1.28
CD44-225ENST00000527326 PCDHB15Q9Y5E8 787 aa7.07□□□□□ -1.28
CD44-225ENST00000527326 UHRF1BP1LA0JNW5 1464 aa7.06□□□□□ -1.28
CD44-225ENST00000527326 CTIFO43310 598 aaKnown RBP7.06□□□□□ -1.28
CD44-225ENST00000527326 U2AF2P26368 475 aaKnown RBP eCLIP7.06□□□□□ -1.28
CD44-225ENST00000527326 SH3BP2P78314 561 aa7.06□□□□□ -1.28
CD44-225ENST00000527326 KCNH2Q12809 1159 aa7.06□□□□□ -1.28
CD44-225ENST00000527326 NBPF9Q3BBW0 867 aa7.06□□□□□ -1.28
CD44-225ENST00000527326 RSBN1LQ6PCB5 846 aaPredicted RBP7.06□□□□□ -1.28
CD44-225ENST00000527326 KRT222Q8N1A0 295 aa7.06□□□□□ -1.28
CD44-225ENST00000527326 SIRT1Q96EB6 747 aa7.06□□□□□ -1.28
CD44-225ENST00000527326 UNC93B1Q9H1C4 597 aa7.06□□□□□ -1.28
CD44-225ENST00000527326 BSDC1Q9NW68 430 aaPredicted RBP7.06□□□□□ -1.28
CD44-225ENST00000527326 DONSONQ9NYP3 566 aa7.06□□□□□ -1.28
CD44-225ENST00000527326 DDX41Q9UJV9 622 aaKnown RBP7.06□□□□□ -1.28
CD44-225ENST00000527326 AQRO60306 1485 aaKnown RBP eCLIP7.05□□□□□ -1.28
CD44-225ENST00000527326 ARID3CA6NKF2 412 aa7.05□□□□□ -1.28
CD44-225ENST00000527326 TTC36A6NLP5 189 aa7.05□□□□□ -1.28
CD44-225ENST00000527326 SIAH2O43255 324 aa7.05□□□□□ -1.28
CD44-225ENST00000527326 DHX16O60231 1041 aaKnown RBP7.05□□□□□ -1.28
CD44-225ENST00000527326 REC8O95072 547 aa7.05□□□□□ -1.28
CD44-225ENST00000527326 GJA5P36382 358 aa7.05□□□□□ -1.28
CD44-225ENST00000527326 SSR1P43307 286 aaKnown RBP7.05□□□□□ -1.28
CD44-225ENST00000527326 MAP2K1Q02750 393 aaPredicted RBP7.05□□□□□ -1.28
CD44-225ENST00000527326 FKBP5Q13451 457 aaPredicted RBP7.05□□□□□ -1.28
CD44-225ENST00000527326 LINC01559Q495D7 138 aa7.05□□□□□ -1.28
CD44-225ENST00000527326 CT47A1Q5JQC4 288 aaPredicted RBP7.05□□□□□ -1.28
CD44-225ENST00000527326 TREML4Q6UXN2 200 aa7.05□□□□□ -1.28
CD44-225ENST00000527326 FAM43BQ6ZT52 329 aaPredicted RBP7.05□□□□□ -1.28
CD44-225ENST00000527326 SMC5Q8IY18 1101 aa7.05□□□□□ -1.28
CD44-225ENST00000527326 GOLGA6L1Q8N7Z2 621 aa7.05□□□□□ -1.28
CD44-225ENST00000527326 BAP1Q92560 729 aa7.05□□□□□ -1.28
CD44-225ENST00000527326 TNPO1Q92973 898 aaKnown RBP7.05□□□□□ -1.28
CD44-225ENST00000527326 SNX21Q969T3 373 aa7.05□□□□□ -1.28
CD44-225ENST00000527326 CHMP4CQ96CF2 233 aa7.05□□□□□ -1.28
CD44-225ENST00000527326 SPTLC3Q9NUV7 552 aa7.05□□□□□ -1.28
CD44-225ENST00000527326 RSPH14Q9UHP6 348 aa7.05□□□□□ -1.28
CD44-225ENST00000527326 KIF15Q9NS87 1388 aa7.05□□□□□ -1.28
CD44-225ENST00000527326 SYNJ2O15056 1496 aa7.04□□□□□ -1.28
CD44-225ENST00000527326 GRIN2BQ13224 1484 aa7.04□□□□□ -1.28
CD44-225ENST00000527326 SNAPC4Q5SXM2 1469 aa7.04□□□□□ -1.28
CD44-225ENST00000527326 MYBBP1AQ9BQG0 1328 aaKnown RBP7.04□□□□□ -1.28
CD44-225ENST00000527326 HFM1A2PYH4 1435 aa7.04□□□□□ -1.28
CD44-225ENST00000527326 SPATA31E1Q6ZUB1 1445 aa7.04□□□□□ -1.28
CD44-225ENST00000527326 CFAP43Q8NDM7 1665 aa7.04□□□□□ -1.28
CD44-225ENST00000527326 GOLIM4O00461 696 aa7.04□□□□□ -1.28
CD44-225ENST00000527326 SPTLC1O15269 473 aa7.04□□□□□ -1.28
CD44-225ENST00000527326 CTHP32929 405 aa7.04□□□□□ -1.28
CD44-225ENST00000527326 MUM1L1Q5H9M0 696 aa7.04□□□□□ -1.28
CD44-225ENST00000527326 DESI1Q6ICB0 168 aa7.04□□□□□ -1.28
CD44-225ENST00000527326 RIC3Q7Z5B4 369 aa7.04□□□□□ -1.28
CD44-225ENST00000527326 CHMP7Q8WUX9 453 aaPredicted RBP7.04□□□□□ -1.28
CD44-225ENST00000527326 ZNF592Q92610 1267 aa7.04□□□□□ -1.28
CD44-225ENST00000527326 SENP2Q9HC62 589 aa7.04□□□□□ -1.28
CD44-225ENST00000527326 CTNNA3Q9UI47 895 aa7.04□□□□□ -1.28
CD44-225ENST00000527326 WASF2Q9Y6W5 498 aa7.04□□□□□ -1.28
CD44-225ENST00000527326 HECW1Q76N89 1606 aa7.04□□□□□ -1.28
CD44-225ENST00000527326 PTPN23Q9H3S7 1636 aa7.04□□□□□ -1.28
CD44-225ENST00000527326 LRRC9Q6ZRR7 1453 aa7.04□□□□□ -1.28
CD44-225ENST00000527326 BLMP54132 1417 aaPredicted RBP7.03□□□□□ -1.28
CD44-225ENST00000527326 IGSF3O75054 1194 aa7.03□□□□□ -1.28
CD44-225ENST00000527326 SNRPBP14678 240 aaKnown RBP7.03□□□□□ -1.28
CD44-225ENST00000527326 CASQ1P31415 396 aa7.03□□□□□ -1.28
CD44-225ENST00000527326 NOLC1Q14978 699 aaKnown RBP eCLIP7.03□□□□□ -1.28
CD44-225ENST00000527326 NBPF10Q6P3W6 841 aaKnown RBP7.03□□□□□ -1.28
CD44-225ENST00000527326 CCDC91Q7Z6B0 441 aa7.03□□□□□ -1.28
CD44-225ENST00000527326 GOPCQ9HD26 462 aa7.03□□□□□ -1.28
CD44-225ENST00000527326 MED4Q9NPJ6 270 aa7.03□□□□□ -1.28
CD44-225ENST00000527326 KNSTRNQ9Y448 316 aa7.03□□□□□ -1.28
CD44-225ENST00000527326 RTEL1-TNFRSF6BF6WH68 1400 aa7.02□□□□□ -1.29
CD44-225ENST00000527326 CFAP99D6REC4 459 aa7.02□□□□□ -1.29
CD44-225ENST00000527326 APBB1O00213 710 aa7.02□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms