RNA–Protein interactions for RNA: ENST00000523511.1

LSM1-205, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 700 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-205ENST00000523511 NLGN2Q8NFZ4 835 aa21.44■■□□□ 1.02
LSM1-205ENST00000523511 NARFQ9UHQ1 456 aa21.44■■□□□ 1.02
LSM1-205ENST00000523511 ZBTB1Q9Y2K1 713 aa21.44■■□□□ 1.02
LSM1-205ENST00000523511 UBR3Q6ZT12 1888 aa21.43■■□□□ 1.02
LSM1-205ENST00000523511 TGFB2P61812 414 aa21.43■■□□□ 1.02
LSM1-205ENST00000523511 RUNDC1Q96C34 613 aa21.43■■□□□ 1.02
LSM1-205ENST00000523511 KCPQ6ZWJ8 1503 aa21.43■■□□□ 1.02
LSM1-205ENST00000523511 IL6STP40189 918 aaPredicted RBP21.42■■□□□ 1.02
LSM1-205ENST00000523511 COL24A1Q17RW2 1714 aa21.42■■□□□ 1.02
LSM1-205ENST00000523511 USPL1Q5W0Q7 1092 aa21.42■■□□□ 1.02
LSM1-205ENST00000523511 SRP68Q9UHB9 627 aaKnown RBP21.41■■□□□ 1.02
LSM1-205ENST00000523511 COL15A1P39059 1388 aa21.4■■□□□ 1.02
LSM1-205ENST00000523511 KCNQ3O43525 872 aa21.4■■□□□ 1.02
LSM1-205ENST00000523511 EIF5P55010 431 aaKnown RBP21.4■■□□□ 1.02
LSM1-205ENST00000523511 FKBP8Q14318 412 aa21.4■■□□□ 1.02
LSM1-205ENST00000523511 ZNF330Q9Y3S2 320 aaPredicted RBP21.4■■□□□ 1.02
LSM1-205ENST00000523511 COL5A3P25940 1745 aaPredicted RBP21.39■■□□□ 1.01
LSM1-205ENST00000523511 TMPOP42166 694 aaKnown RBP21.39■■□□□ 1.01
LSM1-205ENST00000523511 BABAM1Q9NWV8 329 aa21.39■■□□□ 1.01
LSM1-205ENST00000523511 CICQ96RK0 1608 aaPredicted RBP21.38■■□□□ 1.01
LSM1-205ENST00000523511 ANP32CO43423 234 aa21.38■■□□□ 1.01
LSM1-205ENST00000523511 ADAMTS8Q9UP79 889 aa21.38■■□□□ 1.01
LSM1-205ENST00000523511 A1BGP04217 495 aa21.37■■□□□ 1.01
LSM1-205ENST00000523511 TM4SF1P30408 202 aa21.37■■□□□ 1.01
LSM1-205ENST00000523511 MIS18AQ9NYP9 233 aa21.37■■□□□ 1.01
LSM1-205ENST00000523511 USP16Q9Y5T5 823 aa21.37■■□□□ 1.01
LSM1-205ENST00000523511 NEUROD2Q15784 382 aa21.36■■□□□ 1.01
LSM1-205ENST00000523511 TJP1Q07157 1748 aa21.35■■□□□ 1.01
LSM1-205ENST00000523511 CCDC146Q8IYE0 955 aa21.35■■□□□ 1.01
LSM1-205ENST00000523511 TSPYL4Q9UJ04 414 aa21.35■■□□□ 1.01
LSM1-205ENST00000523511 THUMPD2Q9BTF0 503 aaKnown RBP21.33■■□□□ 1.01
LSM1-205ENST00000523511 TBC1D2BQ9UPU7 963 aa21.33■■□□□ 1.01
LSM1-205ENST00000523511 ZNF652Q9Y2D9 606 aa21.33■■□□□ 1.01
LSM1-205ENST00000523511 POLRMTO00411 1230 aaKnown RBP21.32■■□□□ 1
LSM1-205ENST00000523511 EIF4A1P60842 406 aaKnown RBP21.32■■□□□ 1
LSM1-205ENST00000523511 NFIXQ14938 502 aa21.32■■□□□ 1
LSM1-205ENST00000523511 DZIP3Q86Y13 1208 aaKnown RBP21.32■■□□□ 1
LSM1-205ENST00000523511 GIGYF1O75420 1035 aaPredicted RBP21.31■■□□□ 1
LSM1-205ENST00000523511 SERPINB2P05120 415 aa21.31■■□□□ 1
LSM1-205ENST00000523511 SETDB2Q96T68 719 aa21.31■■□□□ 1
LSM1-205ENST00000523511 RRP7AQ9Y3A4 280 aaKnown RBP21.31■■□□□ 1
LSM1-205ENST00000523511 UBR2Q8IWV8 1755 aa21.31■■□□□ 1
LSM1-205ENST00000523511 A0A0G2JLW4 131 aa21.3■■□□□ 1
LSM1-205ENST00000523511 NPHP1O15259 732 aa21.3■■□□□ 1
LSM1-205ENST00000523511 YBX3P16989 372 aaKnown RBP eCLIP21.3■■□□□ 1
LSM1-205ENST00000523511 CALD1Q05682 793 aaKnown RBP21.3■■□□□ 1
LSM1-205ENST00000523511 DDR1Q08345 913 aa21.3■■□□□ 1
LSM1-205ENST00000523511 CLEC4GQ6UXB4 293 aa21.3■■□□□ 1
LSM1-205ENST00000523511 MYH14Q7Z406 1995 aaKnown RBP21.3■■□□□ 1
LSM1-205ENST00000523511 PRAMEF22A3QJZ6 481 aa21.29■■□□□ 1
LSM1-205ENST00000523511 RGL2O15211 777 aa21.29■■□□□ 1
LSM1-205ENST00000523511 BICDL1Q6ZP65 573 aa21.29■■□□□ 1
LSM1-205ENST00000523511 BCL2L12Q9HB09 334 aa21.29■■□□□ 1
LSM1-205ENST00000523511 PIM2Q9P1W9 311 aa21.29■■□□□ 1
LSM1-205ENST00000523511 SIPA1L3O60292 1781 aaPredicted RBP21.28■■□□□ 1
LSM1-205ENST00000523511 PDZRN3Q9UPQ7 1066 aa21.28■■□□□ 1
LSM1-205ENST00000523511 C10orf71Q711Q0 1435 aa21.28■■□□□ 1
LSM1-205ENST00000523511 VIRMAQ69YN4 1812 aaKnown RBP21.27■■□□□ 1
LSM1-205ENST00000523511 DPEP1P16444 411 aa21.27■■□□□ 1
LSM1-205ENST00000523511 BCS1LQ9Y276 419 aa21.27■■□□□ 1
LSM1-205ENST00000523511 LAS1LQ9Y4W2 734 aaKnown RBP21.27■■□□□ 1
LSM1-205ENST00000523511 CAMTA2O94983 1202 aa21.26■□□□□ 0.99
LSM1-205ENST00000523511 ERBB4Q15303 1308 aa21.26■□□□□ 0.99
LSM1-205ENST00000523511 C4AP0C0L4 1744 aa21.25■□□□□ 0.99
LSM1-205ENST00000523511 TBC1D9BQ66K14 1250 aa21.25■□□□□ 0.99
LSM1-205ENST00000523511 PDE6BP35913 854 aa21.24■□□□□ 0.99
LSM1-205ENST00000523511 PIP4K2AP48426 406 aaPredicted RBP21.24■□□□□ 0.99
LSM1-205ENST00000523511 DALRD3Q5D0E6 543 aaKnown RBP21.24■□□□□ 0.99
LSM1-205ENST00000523511 KIF6Q6ZMV9 814 aa21.24■□□□□ 0.99
LSM1-205ENST00000523511 WWC3Q9ULE0 1092 aa21.24■□□□□ 0.99
LSM1-205ENST00000523511 TRIM35Q9UPQ4 493 aa21.24■□□□□ 0.99
LSM1-205ENST00000523511 CARMIL3Q8ND23 1372 aa21.23■□□□□ 0.99
LSM1-205ENST00000523511 NBPF26B4DH59 902 aa21.23■□□□□ 0.99
LSM1-205ENST00000523511 H0YIN7 160 aa21.23■□□□□ 0.99
LSM1-205ENST00000523511 CHL1O00533 1208 aa21.23■□□□□ 0.99
LSM1-205ENST00000523511 APAF1O14727 1248 aa21.23■□□□□ 0.99
LSM1-205ENST00000523511 ST5P78524 1137 aa21.23■□□□□ 0.99
LSM1-205ENST00000523511 NBPF10Q6P3W6 841 aaKnown RBP21.23■□□□□ 0.99
LSM1-205ENST00000523511 NBPF15Q8N660 670 aa21.23■□□□□ 0.99
LSM1-205ENST00000523511 MRS2Q9HD23 443 aa21.23■□□□□ 0.99
LSM1-205ENST00000523511 PXDNLA1KZ92 1463 aa21.22■□□□□ 0.99
LSM1-205ENST00000523511 TPTE2Q6XPS3 522 aa21.22■□□□□ 0.99
LSM1-205ENST00000523511 NGEFQ8N5V2 710 aa21.22■□□□□ 0.99
LSM1-205ENST00000523511 BRIP1Q9BX63 1249 aa21.22■□□□□ 0.99
LSM1-205ENST00000523511 CHMP4AQ9BY43 222 aa21.22■□□□□ 0.99
LSM1-205ENST00000523511 ERVV-1B6SEH8 477 aa21.21■□□□□ 0.99
LSM1-205ENST00000523511 MYL6BP14649 208 aa21.21■□□□□ 0.99
LSM1-205ENST00000523511 EIF2S2P20042 333 aaKnown RBP21.21■□□□□ 0.99
LSM1-205ENST00000523511 CNBD1Q8NA66 436 aa21.21■□□□□ 0.99
LSM1-205ENST00000523511 CFAP44Q96MT7 982 aa21.21■□□□□ 0.99
LSM1-205ENST00000523511 KCNA3P22001 575 aa21.2■□□□□ 0.98
LSM1-205ENST00000523511 ARHGAP27Q6ZUM4 889 aa21.2■□□□□ 0.98
LSM1-205ENST00000523511 NBPF5PQ86XG9 351 aaPredicted RBP21.2■□□□□ 0.98
LSM1-205ENST00000523511 ZNF784Q8NCA9 323 aaPredicted RBP21.2■□□□□ 0.98
LSM1-205ENST00000523511 GTF2E1P29083 439 aaPredicted RBP21.19■□□□□ 0.98
LSM1-205ENST00000523511 GNAI1P63096 354 aa21.19■□□□□ 0.98
LSM1-205ENST00000523511 C2CD5Q86YS7 1000 aa21.19■□□□□ 0.98
LSM1-205ENST00000523511 NIP7Q9Y221 180 aaKnown RBP eCLIP21.19■□□□□ 0.98
LSM1-205ENST00000523511 CHRNA5P30532 468 aa21.18■□□□□ 0.98
LSM1-205ENST00000523511 HOXB7P09629 217 aa21.17■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms