RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 FCHSD2O94868 740 aa10.16□□□□□ -0.78
LIMCH1-219ENST00000514096 HNRNPUQ00839 825 aaKnown RBP eCLIP10.16□□□□□ -0.78
LIMCH1-219ENST00000514096 RTL1A6NKG5 1358 aa10.16□□□□□ -0.78
LIMCH1-219ENST00000514096 HSP90AA2PQ14568 343 aaPredicted RBP10.16□□□□□ -0.78
LIMCH1-219ENST00000514096 NLGN2Q8NFZ4 835 aa10.16□□□□□ -0.78
LIMCH1-219ENST00000514096 MON2Q7Z3U7 1717 aa10.16□□□□□ -0.78
LIMCH1-219ENST00000514096 ABCA3Q99758 1704 aa10.16□□□□□ -0.78
LIMCH1-219ENST00000514096 NSD2O96028 1365 aa10.16□□□□□ -0.78
LIMCH1-219ENST00000514096 TMPOP42166 694 aaKnown RBP10.15□□□□□ -0.78
LIMCH1-219ENST00000514096 ARHGEF1Q92888 912 aaKnown RBP10.15□□□□□ -0.78
LIMCH1-219ENST00000514096 A0A0G2JLW4 131 aa10.15□□□□□ -0.78
LIMCH1-219ENST00000514096 ZNF622Q969S3 477 aaKnown RBP eCLIP10.15□□□□□ -0.79
LIMCH1-219ENST00000514096 CFAP44Q96MT7 982 aa10.15□□□□□ -0.79
LIMCH1-219ENST00000514096 MYOM1P52179 1685 aa10.14□□□□□ -0.79
LIMCH1-219ENST00000514096 PEAK1Q9H792 1746 aa10.14□□□□□ -0.79
LIMCH1-219ENST00000514096 STARD3NLO95772 234 aa10.14□□□□□ -0.79
LIMCH1-219ENST00000514096 NFE2L2Q16236 605 aa10.14□□□□□ -0.79
LIMCH1-219ENST00000514096 PNPLA7Q6ZV29 1317 aa10.13□□□□□ -0.79
LIMCH1-219ENST00000514096 FMNL2Q96PY5 1086 aa10.13□□□□□ -0.79
LIMCH1-219ENST00000514096 CHRNA5P30532 468 aa10.13□□□□□ -0.79
LIMCH1-219ENST00000514096 TAF7Q15545 349 aaPredicted RBP10.13□□□□□ -0.79
LIMCH1-219ENST00000514096 NUTM1Q86Y26 1132 aa10.13□□□□□ -0.79
LIMCH1-219ENST00000514096 MARF1Q9Y4F3 1742 aaKnown RBP10.13□□□□□ -0.79
LIMCH1-219ENST00000514096 MAP3K5Q99683 1374 aa10.13□□□□□ -0.79
LIMCH1-219ENST00000514096 ATP5J2-PTCD1G3V325 749 aa10.12□□□□□ -0.79
LIMCH1-219ENST00000514096 ERVV-2B6SEH9 535 aa10.12□□□□□ -0.79
LIMCH1-219ENST00000514096 RUNDC1Q96C34 613 aa10.12□□□□□ -0.79
LIMCH1-219ENST00000514096 SYT17Q9BSW7 474 aa10.12□□□□□ -0.79
LIMCH1-219ENST00000514096 BRD2P25440 801 aaKnown RBP10.12□□□□□ -0.79
LIMCH1-219ENST00000514096 DISP2A7MBM2 1401 aa10.12□□□□□ -0.79
LIMCH1-219ENST00000514096 CCDC87Q9NVE4 849 aa10.11□□□□□ -0.79
LIMCH1-219ENST00000514096 SLC4A10Q6U841 1118 aa10.11□□□□□ -0.79
LIMCH1-219ENST00000514096 DZIP3Q86Y13 1208 aaKnown RBP10.11□□□□□ -0.79
LIMCH1-219ENST00000514096 MTFR1LQ9H019 292 aa10.11□□□□□ -0.79
LIMCH1-219ENST00000514096 PARP3Q9Y6F1 533 aa10.11□□□□□ -0.79
LIMCH1-219ENST00000514096 HDGFL1Q5TGJ6 251 aa10.1□□□□□ -0.79
LIMCH1-219ENST00000514096 KDM6AO15550 1401 aaPredicted RBP10.1□□□□□ -0.79
LIMCH1-219ENST00000514096 PROSER3Q2NL68 480 aa10.1□□□□□ -0.79
LIMCH1-219ENST00000514096 SLC27A3Q5K4L6 730 aa10.1□□□□□ -0.79
LIMCH1-219ENST00000514096 TTLL7Q6ZT98 887 aa10.1□□□□□ -0.79
LIMCH1-219ENST00000514096 KIF20BQ96Q89 1820 aa10.1□□□□□ -0.79
LIMCH1-219ENST00000514096 LMO7Q8WWI1 1683 aa10.1□□□□□ -0.79
LIMCH1-219ENST00000514096 CDCA7LQ96GN5 454 aa10.1□□□□□ -0.79
LIMCH1-219ENST00000514096 PNNQ9H307 717 aaKnown RBP10.1□□□□□ -0.79
LIMCH1-219ENST00000514096 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.1□□□□□ -0.79
LIMCH1-219ENST00000514096 NWD2Q9ULI1 1742 aa10.09□□□□□ -0.79
LIMCH1-219ENST00000514096 NRAPQ86VF7 1730 aa10.09□□□□□ -0.79
LIMCH1-219ENST00000514096 ARHGAP27Q6ZUM4 889 aa10.09□□□□□ -0.79
LIMCH1-219ENST00000514096 BRPF3Q9ULD4 1205 aa10.09□□□□□ -0.79
LIMCH1-219ENST00000514096 NIP7Q9Y221 180 aaKnown RBP eCLIP10.09□□□□□ -0.79
LIMCH1-219ENST00000514096 CHMP3Q9Y3E7 222 aa10.08□□□□□ -0.8
LIMCH1-219ENST00000514096 SNRPA1P09661 255 aaKnown RBP10.08□□□□□ -0.8
LIMCH1-219ENST00000514096 TSPYL6Q8N831 410 aa10.08□□□□□ -0.8
LIMCH1-219ENST00000514096 PARD3Q8TEW0 1356 aa10.08□□□□□ -0.8
LIMCH1-219ENST00000514096 NBPF5PQ86XG9 351 aaPredicted RBP10.08□□□□□ -0.8
LIMCH1-219ENST00000514096 SYNE4Q8N205 404 aa10.08□□□□□ -0.8
LIMCH1-219ENST00000514096 CHPF2Q9P2E5 772 aa10.08□□□□□ -0.8
LIMCH1-219ENST00000514096 COL18A1P39060 1754 aa10.08□□□□□ -0.8
LIMCH1-219ENST00000514096 BCL9O00512 1426 aa10.07□□□□□ -0.8
LIMCH1-219ENST00000514096 MAPK8IP2Q13387 824 aaPredicted RBP10.07□□□□□ -0.8
LIMCH1-219ENST00000514096 FRAT1Q92837 279 aaPredicted RBP10.07□□□□□ -0.8
LIMCH1-219ENST00000514096 YY1P25490 414 aa10.07□□□□□ -0.8
LIMCH1-219ENST00000514096 COPS6Q7L5N1 327 aa10.07□□□□□ -0.8
LIMCH1-219ENST00000514096 CYP19A1P11511 503 aaPredicted RBP10.07□□□□□ -0.8
LIMCH1-219ENST00000514096 HLFQ16534 295 aa10.07□□□□□ -0.8
LIMCH1-219ENST00000514096 SETDB2Q96T68 719 aa10.07□□□□□ -0.8
LIMCH1-219ENST00000514096 DUSP27Q5VZP5 1158 aa10.06□□□□□ -0.8
LIMCH1-219ENST00000514096 OLFM4Q6UX06 510 aa10.06□□□□□ -0.8
LIMCH1-219ENST00000514096 RIC3Q7Z5B4 369 aa10.06□□□□□ -0.8
LIMCH1-219ENST00000514096 AKT1S1Q96B36 256 aa10.06□□□□□ -0.8
LIMCH1-219ENST00000514096 MBIPQ9NS73 344 aa10.06□□□□□ -0.8
LIMCH1-219ENST00000514096 TBC1D9BQ66K14 1250 aa10.06□□□□□ -0.8
LIMCH1-219ENST00000514096 C8orf58Q8NAV2 365 aa10.06□□□□□ -0.8
LIMCH1-219ENST00000514096 XAGE3Q8WTP9 111 aa10.06□□□□□ -0.8
LIMCH1-219ENST00000514096 PHAXQ9H814 394 aaKnown RBP10.06□□□□□ -0.8
LIMCH1-219ENST00000514096 LRRC37A3O60309 1634 aa10.06□□□□□ -0.8
LIMCH1-219ENST00000514096 HCLS1P14317 486 aaPredicted RBP10.06□□□□□ -0.8
LIMCH1-219ENST00000514096 NKX1-1Q15270 411 aaPredicted RBP10.06□□□□□ -0.8
LIMCH1-219ENST00000514096 PNISRQ8TF01 805 aaKnown RBP10.06□□□□□ -0.8
LIMCH1-219ENST00000514096 CLUAP1Q96AJ1 413 aa10.06□□□□□ -0.8
LIMCH1-219ENST00000514096 RPS6KA4O75676 772 aa10.05□□□□□ -0.8
LIMCH1-219ENST00000514096 KIF6Q6ZMV9 814 aa10.05□□□□□ -0.8
LIMCH1-219ENST00000514096 KIF24Q5T7B8 1368 aa10.05□□□□□ -0.8
LIMCH1-219ENST00000514096 GYS1P13807 737 aa10.05□□□□□ -0.8
LIMCH1-219ENST00000514096 EXOSC9Q06265 439 aaKnown RBP10.05□□□□□ -0.8
LIMCH1-219ENST00000514096 NFIXQ14938 502 aa10.05□□□□□ -0.8
LIMCH1-219ENST00000514096 INTS5Q6P9B9 1019 aaKnown RBP10.05□□□□□ -0.8
LIMCH1-219ENST00000514096 SLC51AQ86UW1 340 aa10.05□□□□□ -0.8
LIMCH1-219ENST00000514096 PLEKHF1Q96S99 279 aa10.05□□□□□ -0.8
LIMCH1-219ENST00000514096 SPINK5Q9NQ38 1064 aaPredicted RBP10.05□□□□□ -0.8
LIMCH1-219ENST00000514096 TRIM35Q9UPQ4 493 aa10.05□□□□□ -0.8
LIMCH1-219ENST00000514096 F6X3S4 739 aa10.04□□□□□ -0.8
LIMCH1-219ENST00000514096 ARID3AQ99856 593 aa10.04□□□□□ -0.8
LIMCH1-219ENST00000514096 CRYBG1Q9Y4K1 1723 aa10.04□□□□□ -0.8
LIMCH1-219ENST00000514096 SERPINB2P05120 415 aa10.04□□□□□ -0.8
LIMCH1-219ENST00000514096 RGS3P49796 1198 aa10.04□□□□□ -0.8
LIMCH1-219ENST00000514096 NBPF26B4DH59 902 aa10.04□□□□□ -0.8
LIMCH1-219ENST00000514096 DPEP1P16444 411 aa10.04□□□□□ -0.8
LIMCH1-219ENST00000514096 PTGER2P43116 358 aa10.04□□□□□ -0.8
LIMCH1-219ENST00000514096 LMOD3Q0VAK6 560 aa10.04□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms