RNA–Protein interactions for RNA: ENST00000513450.1

RNF4-219, Transcript of ring finger protein 4, human

TSL 5

Gene RNF4, Length 416 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RNF4-219	ENST00000513450	NIFK	Q9BYG3	293 aa	Known RBP	4.24	□□□□□ -1.73
RNF4-219	ENST00000513450	POLM	Q9NP87	494 aa	Predicted RBP	4.24	□□□□□ -1.73
RNF4-219	ENST00000513450	TTLL8	A6PVC2	850 aa		4.23	□□□□□ -1.73
RNF4-219	ENST00000513450	SPATA31C2	B4DYI2	1134 aa		4.23	□□□□□ -1.73
RNF4-219	ENST00000513450	PPP1R12B	O60237	982 aa	Predicted RBP	4.23	□□□□□ -1.73
RNF4-219	ENST00000513450	CTSO	P43234	321 aa	Predicted RBP	4.23	□□□□□ -1.73
RNF4-219	ENST00000513450	HIRA	P54198	1017 aa	Predicted RBP	4.23	□□□□□ -1.73
RNF4-219	ENST00000513450	TRIM26	Q12899	539 aa	Predicted RBP	4.23	□□□□□ -1.73
RNF4-219	ENST00000513450	FKBP5	Q13451	457 aa	Predicted RBP	4.23	□□□□□ -1.73
RNF4-219	ENST00000513450	TEAD4	Q15561	434 aa		4.23	□□□□□ -1.73
RNF4-219	ENST00000513450	WDR44	Q5JSH3	913 aa		4.23	□□□□□ -1.73
RNF4-219	ENST00000513450	GNAS	Q5JWF2	1037 aa		4.23	□□□□□ -1.73
RNF4-219	ENST00000513450	C6orf118	Q5T5N4	469 aa		4.23	□□□□□ -1.73
RNF4-219	ENST00000513450	FOXD4L5	Q5VV16	416 aa	Predicted RBP	4.23	□□□□□ -1.73
RNF4-219	ENST00000513450	TRIM46	Q7Z4K8	759 aa		4.23	□□□□□ -1.73
RNF4-219	ENST00000513450	ZNF295-AS1	Q8N0V1	137 aa		4.23	□□□□□ -1.73
RNF4-219	ENST00000513450	RNF217	Q8TC41	542 aa		4.23	□□□□□ -1.73
RNF4-219	ENST00000513450	VTI1A	Q96AJ9	217 aa		4.23	□□□□□ -1.73
RNF4-219	ENST00000513450	PURB	Q96QR8	312 aa	Known RBP	4.23	□□□□□ -1.73
RNF4-219	ENST00000513450	C2orf49	Q9BVC5	232 aa	Predicted RBP	4.23	□□□□□ -1.73
RNF4-219	ENST00000513450	SOS2	Q07890	1332 aa	Predicted RBP	4.22	□□□□□ -1.73
RNF4-219	ENST00000513450	SERTM1	A2A2V5	107 aa		4.22	□□□□□ -1.73
RNF4-219	ENST00000513450	TERT	O14746	1132 aa	Known RBP	4.22	□□□□□ -1.73
RNF4-219	ENST00000513450	LGR5	O75473	907 aa		4.22	□□□□□ -1.73
RNF4-219	ENST00000513450	BMP1	P13497	986 aa		4.22	□□□□□ -1.73
RNF4-219	ENST00000513450	NOS2	P35228	1153 aa		4.22	□□□□□ -1.73
RNF4-219	ENST00000513450	TBCEL	Q5QJ74	424 aa		4.22	□□□□□ -1.73
RNF4-219	ENST00000513450	LYSMD3	Q7Z3D4	306 aa		4.22	□□□□□ -1.73
RNF4-219	ENST00000513450	CHMP7	Q8WUX9	453 aa	Predicted RBP	4.22	□□□□□ -1.73
RNF4-219	ENST00000513450	ZFP42	Q96MM3	310 aa		4.22	□□□□□ -1.73
RNF4-219	ENST00000513450	ATP13A2	Q9NQ11	1180 aa		4.22	□□□□□ -1.73
RNF4-219	ENST00000513450	CABP1	Q9NZU7	370 aa		4.22	□□□□□ -1.73
RNF4-219	ENST00000513450	USP3	Q9Y6I4	520 aa		4.22	□□□□□ -1.73
RNF4-219	ENST00000513450	IVNS1ABP	Q9Y6Y0	642 aa		4.22	□□□□□ -1.73
RNF4-219	ENST00000513450	EML1	O00423	815 aa		4.21	□□□□□ -1.74
RNF4-219	ENST00000513450	SUZ12	Q15022	739 aa	Known RBP	4.21	□□□□□ -1.74
RNF4-219	ENST00000513450	C4orf17	Q53FE4	359 aa		4.21	□□□□□ -1.74
RNF4-219	ENST00000513450	NBPF10	Q6P3W6	841 aa	Known RBP	4.21	□□□□□ -1.74
RNF4-219	ENST00000513450	ZDHHC1	Q8WTX9	485 aa		4.21	□□□□□ -1.74
RNF4-219	ENST00000513450	L3MBTL2	Q969R5	705 aa		4.21	□□□□□ -1.74
RNF4-219	ENST00000513450	EGFL7	Q9UHF1	273 aa		4.21	□□□□□ -1.74
RNF4-219	ENST00000513450	ZNF232	Q9UNY5	417 aa		4.21	□□□□□ -1.74
RNF4-219	ENST00000513450	ZNF800	Q2TB10	664 aa	Predicted RBP eCLIP	4.2	□□□□□ -1.74
RNF4-219	ENST00000513450	NBPF1	Q3BBV0	1214 aa		4.2	□□□□□ -1.74
RNF4-219	ENST00000513450	C1orf53	Q5VUE5	145 aa		4.2	□□□□□ -1.74
RNF4-219	ENST00000513450	PRICKLE2	Q7Z3G6	844 aa		4.2	□□□□□ -1.74
RNF4-219	ENST00000513450	KIFC2	Q96AC6	838 aa		4.2	□□□□□ -1.74
RNF4-219	ENST00000513450	MYO19	Q96H55	970 aa		4.2	□□□□□ -1.74
RNF4-219	ENST00000513450	MKNK1	Q9BUB5	465 aa		4.2	□□□□□ -1.74
RNF4-219	ENST00000513450	SENP2	Q9HC62	589 aa		4.2	□□□□□ -1.74
RNF4-219	ENST00000513450	GPC6	Q9Y625	555 aa	Predicted RBP	4.2	□□□□□ -1.74
RNF4-219	ENST00000513450		A0A1B0GTH6	734 aa		4.19	□□□□□ -1.74
RNF4-219	ENST00000513450	SNRPB	P14678	240 aa	Known RBP	4.19	□□□□□ -1.74
RNF4-219	ENST00000513450	SCNN1A	P37088	669 aa		4.19	□□□□□ -1.74
RNF4-219	ENST00000513450	PLA2G4A	P47712	749 aa		4.19	□□□□□ -1.74
RNF4-219	ENST00000513450	POU4F2	Q12837	409 aa		4.19	□□□□□ -1.74
RNF4-219	ENST00000513450	SF3B2	Q13435	895 aa	Known RBP	4.19	□□□□□ -1.74
RNF4-219	ENST00000513450	LCE2C	Q5TA81	110 aa		4.19	□□□□□ -1.74
RNF4-219	ENST00000513450	C16orf46	Q6P387	395 aa		4.19	□□□□□ -1.74
RNF4-219	ENST00000513450	CAPN12	Q6ZSI9	719 aa		4.19	□□□□□ -1.74
RNF4-219	ENST00000513450	ALDH16A1	Q8IZ83	802 aa		4.19	□□□□□ -1.74
RNF4-219	ENST00000513450	HELQ	Q8TDG4	1101 aa		4.19	□□□□□ -1.74
RNF4-219	ENST00000513450	SLC16A10	Q8TF71	515 aa		4.19	□□□□□ -1.74
RNF4-219	ENST00000513450	GTF3C2	Q8WUA4	911 aa	Predicted RBP	4.19	□□□□□ -1.74
RNF4-219	ENST00000513450	ZDHHC3	Q9NYG2	299 aa		4.19	□□□□□ -1.74
RNF4-219	ENST00000513450	SEPT3	Q9UH03	358 aa		4.19	□□□□□ -1.74
RNF4-219	ENST00000513450	PARP3	Q9Y6F1	533 aa		4.19	□□□□□ -1.74
RNF4-219	ENST00000513450	FIGNL2	A6NMB9	653 aa		4.18	□□□□□ -1.74
RNF4-219	ENST00000513450	MAN1A2	O60476	641 aa		4.18	□□□□□ -1.74
RNF4-219	ENST00000513450	TAT	P17735	454 aa	Predicted RBP	4.18	□□□□□ -1.74
RNF4-219	ENST00000513450	SERPINB4	P48594	390 aa		4.18	□□□□□ -1.74
RNF4-219	ENST00000513450	NAA30	Q147X3	362 aa	Predicted RBP	4.18	□□□□□ -1.74
RNF4-219	ENST00000513450	HIF1A	Q16665	826 aa		4.18	□□□□□ -1.74
RNF4-219	ENST00000513450	RTN1	Q16799	776 aa		4.18	□□□□□ -1.74
RNF4-219	ENST00000513450	SH3PXD2A	Q5TCZ1	1133 aa		4.18	□□□□□ -1.74
RNF4-219	ENST00000513450	SND1	Q7KZF4	910 aa	Known RBP eCLIP	4.18	□□□□□ -1.74
RNF4-219	ENST00000513450	ZSCAN1	Q8NBB4	408 aa		4.18	□□□□□ -1.74
RNF4-219	ENST00000513450	PHACTR1	Q9C0D0	580 aa		4.18	□□□□□ -1.74
RNF4-219	ENST00000513450	GZF1	Q9H116	711 aa	Predicted RBP	4.18	□□□□□ -1.74
RNF4-219	ENST00000513450	QTRT2	Q9H974	415 aa	Known RBP	4.18	□□□□□ -1.74
RNF4-219	ENST00000513450	TIMMDC1	Q9NPL8	285 aa		4.18	□□□□□ -1.74
RNF4-219	ENST00000513450	DNMT3L	Q9UJW3	386 aa		4.18	□□□□□ -1.74
RNF4-219	ENST00000513450	HCN4	Q9Y3Q4	1203 aa		4.18	□□□□□ -1.74
RNF4-219	ENST00000513450	DYRK1B	Q9Y463	629 aa		4.18	□□□□□ -1.74
RNF4-219	ENST00000513450	SOWAHD	A6NJG2	315 aa		4.17	□□□□□ -1.74
RNF4-219	ENST00000513450	ICMT	O60725	284 aa		4.17	□□□□□ -1.74
RNF4-219	ENST00000513450	ABL1	P00519	1130 aa		4.17	□□□□□ -1.74
RNF4-219	ENST00000513450	NPR3	P17342	541 aa		4.17	□□□□□ -1.74
RNF4-219	ENST00000513450	TXLNA	P40222	546 aa		4.17	□□□□□ -1.74
RNF4-219	ENST00000513450	PHKA2	P46019	1235 aa		4.17	□□□□□ -1.74
RNF4-219	ENST00000513450	FKBP4	Q02790	459 aa	Known RBP eCLIP	4.17	□□□□□ -1.74
RNF4-219	ENST00000513450	C11orf91	Q3C1V1	193 aa		4.17	□□□□□ -1.74
RNF4-219	ENST00000513450	COX20	Q5RI15	118 aa		4.17	□□□□□ -1.74
RNF4-219	ENST00000513450	AIDA	Q96BJ3	306 aa		4.17	□□□□□ -1.74
RNF4-219	ENST00000513450	NGLY1	Q96IV0	654 aa		4.17	□□□□□ -1.74
RNF4-219	ENST00000513450	TRIM47	Q96LD4	638 aa		4.17	□□□□□ -1.74
RNF4-219	ENST00000513450	DNMT3A	Q9Y6K1	912 aa	Predicted RBP	4.17	□□□□□ -1.74
RNF4-219	ENST00000513450	FAM13A	O94988	1023 aa		4.16	□□□□□ -1.74
RNF4-219	ENST00000513450	F11	P03951	625 aa		4.16	□□□□□ -1.74
RNF4-219	ENST00000513450	RHOQ	P17081	205 aa		4.16	□□□□□ -1.74

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