RNA–Protein interactions for RNA: ENST00000513346.5

TCOF1-211, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,646 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-211ENST00000513346 CAGE1Q8TC20 777 aa13.19□□□□□ -0.3
TCOF1-211ENST00000513346 LIMCH1Q9UPQ0 1083 aa13.19□□□□□ -0.3
TCOF1-211ENST00000513346 ATP10AO60312 1499 aa13.19□□□□□ -0.3
TCOF1-211ENST00000513346 STX6O43752 255 aa13.19□□□□□ -0.3
TCOF1-211ENST00000513346 UHRF1BP1Q6BDS2 1440 aa13.19□□□□□ -0.3
TCOF1-211ENST00000513346 SMTNL1A8MU46 457 aa13.19□□□□□ -0.3
TCOF1-211ENST00000513346 STK3Q13188 491 aa13.19□□□□□ -0.3
TCOF1-211ENST00000513346 NCBP3Q53F19 620 aaKnown RBP13.19□□□□□ -0.3
TCOF1-211ENST00000513346 CCDC186Q7Z3E2 898 aa13.19□□□□□ -0.3
TCOF1-211ENST00000513346 USP48Q86UV5 1035 aa13.19□□□□□ -0.3
TCOF1-211ENST00000513346 PIBF1Q8WXW3 757 aa13.19□□□□□ -0.3
TCOF1-211ENST00000513346 ANO10Q9NW15 660 aa13.19□□□□□ -0.3
TCOF1-211ENST00000513346 PER1O15534 1290 aaPredicted RBP13.19□□□□□ -0.3
TCOF1-211ENST00000513346 MYL6BP14649 208 aa13.19□□□□□ -0.3
TCOF1-211ENST00000513346 CASTP20810 708 aaKnown RBP13.19□□□□□ -0.3
TCOF1-211ENST00000513346 GSDMDP57764 484 aa13.19□□□□□ -0.3
TCOF1-211ENST00000513346 PCMTD1Q96MG8 357 aaPredicted RBP13.19□□□□□ -0.3
TCOF1-211ENST00000513346 SH2B1Q9NRF2 756 aaPredicted RBP13.19□□□□□ -0.3
TCOF1-211ENST00000513346 INSRP06213 1382 aa13.19□□□□□ -0.3
TCOF1-211ENST00000513346 ZMYM3Q14202 1370 aa13.19□□□□□ -0.3
TCOF1-211ENST00000513346 PBRM1Q86U86 1689 aa13.18□□□□□ -0.3
TCOF1-211ENST00000513346 CAVIN2O95810 425 aa13.18□□□□□ -0.3
TCOF1-211ENST00000513346 GABPB1Q06547 395 aaPredicted RBP13.18□□□□□ -0.3
TCOF1-211ENST00000513346 ZNF397Q8NF99 534 aaPredicted RBP13.18□□□□□ -0.3
TCOF1-211ENST00000513346 SHANK2Q9UPX8 1470 aa13.18□□□□□ -0.3
TCOF1-211ENST00000513346 ZNF165P49910 485 aa13.18□□□□□ -0.3
TCOF1-211ENST00000513346 ERC1Q8IUD2 1116 aa13.18□□□□□ -0.3
TCOF1-211ENST00000513346 SMARCE1Q969G3 411 aa13.18□□□□□ -0.3
TCOF1-211ENST00000513346 TNNQ9UQP3 1299 aa13.18□□□□□ -0.3
TCOF1-211ENST00000513346 BTBD11A6QL63 1104 aa13.18□□□□□ -0.3
TCOF1-211ENST00000513346 ZSCAN12O43309 604 aa13.18□□□□□ -0.3
TCOF1-211ENST00000513346 GBP3Q9H0R5 595 aa13.18□□□□□ -0.3
TCOF1-211ENST00000513346 TBC1D2BQ9UPU7 963 aa13.18□□□□□ -0.3
TCOF1-211ENST00000513346 CTDP1Q9Y5B0 961 aaPredicted RBP13.18□□□□□ -0.3
TCOF1-211ENST00000513346 GAS2L3Q86XJ1 694 aa13.17□□□□□ -0.3
TCOF1-211ENST00000513346 PATL2C9JE40 543 aaKnown RBP13.17□□□□□ -0.3
TCOF1-211ENST00000513346 FYB1O15117 783 aa13.17□□□□□ -0.3
TCOF1-211ENST00000513346 MAP4K4O95819 1239 aaPredicted RBP13.17□□□□□ -0.3
TCOF1-211ENST00000513346 FILIP1LQ4L180 1135 aa13.17□□□□□ -0.3
TCOF1-211ENST00000513346 FAM200AQ8TCP9 573 aa13.17□□□□□ -0.3
TCOF1-211ENST00000513346 EXOC6BQ9Y2D4 811 aa13.17□□□□□ -0.3
TCOF1-211ENST00000513346 DNMT1P26358 1616 aaKnown RBP13.17□□□□□ -0.3
TCOF1-211ENST00000513346 IRX3P78415 501 aaPredicted RBP13.17□□□□□ -0.3
TCOF1-211ENST00000513346 SNW1Q13573 536 aaKnown RBP13.17□□□□□ -0.3
TCOF1-211ENST00000513346 SAMD9Q5K651 1589 aa13.17□□□□□ -0.3
TCOF1-211ENST00000513346 CWC27Q6UX04 472 aaKnown RBP13.17□□□□□ -0.3
TCOF1-211ENST00000513346 GNAT3A8MTJ3 354 aa13.16□□□□□ -0.3
TCOF1-211ENST00000513346 SAFBQ15424 915 aaKnown RBP eCLIP13.16□□□□□ -0.3
TCOF1-211ENST00000513346 CNNM1Q9NRU3 951 aa13.16□□□□□ -0.3
TCOF1-211ENST00000513346 ZMYM4Q5VZL5 1548 aa13.16□□□□□ -0.3
TCOF1-211ENST00000513346 CTAGE5O15320 804 aa13.16□□□□□ -0.3
TCOF1-211ENST00000513346 KDM4AO75164 1064 aa13.16□□□□□ -0.3
TCOF1-211ENST00000513346 NPHP3Q7Z494 1330 aa13.16□□□□□ -0.3
TCOF1-211ENST00000513346 MAGI3Q5TCQ9 1506 aa13.16□□□□□ -0.3
TCOF1-211ENST00000513346 U2AF2P26368 475 aaKnown RBP eCLIP13.16□□□□□ -0.3
TCOF1-211ENST00000513346 ANTXR1Q9H6X2 564 aa13.16□□□□□ -0.3
TCOF1-211ENST00000513346 ZSCAN22P10073 491 aaPredicted RBP13.15□□□□□ -0.3
TCOF1-211ENST00000513346 UTP14CQ5TAP6 766 aaKnown RBP13.15□□□□□ -0.3
TCOF1-211ENST00000513346 KRT28Q7Z3Y7 464 aa13.15□□□□□ -0.3
TCOF1-211ENST00000513346 PPFIBP1Q86W92 1011 aa13.15□□□□□ -0.3
TCOF1-211ENST00000513346 JMYQ8N9B5 988 aa13.15□□□□□ -0.3
TCOF1-211ENST00000513346 SPINK5Q9NQ38 1064 aaPredicted RBP13.15□□□□□ -0.3
TCOF1-211ENST00000513346 GTF2A1P52655 376 aaPredicted RBP13.15□□□□□ -0.3
TCOF1-211ENST00000513346 DMTNQ08495 405 aa13.15□□□□□ -0.3
TCOF1-211ENST00000513346 ZGPATQ8N5A5 531 aaKnown RBP13.15□□□□□ -0.3
TCOF1-211ENST00000513346 NSD2O96028 1365 aa13.15□□□□□ -0.3
TCOF1-211ENST00000513346 SLU7O95391 586 aaKnown RBP13.15□□□□□ -0.3
TCOF1-211ENST00000513346 IL1RAPL2Q9NP60 686 aa13.15□□□□□ -0.3
TCOF1-211ENST00000513346 PPP1R1BQ9UD71 204 aaPredicted RBP13.15□□□□□ -0.3
TCOF1-211ENST00000513346 IL16Q14005 1332 aa13.15□□□□□ -0.3
TCOF1-211ENST00000513346 TARBP1Q13395 1621 aaKnown RBP13.15□□□□□ -0.3
TCOF1-211ENST00000513346 SDSP20132 328 aa13.14□□□□□ -0.31
TCOF1-211ENST00000513346 LMAN1P49257 510 aa13.14□□□□□ -0.31
TCOF1-211ENST00000513346 HSP90AB3PQ58FF7 597 aa13.14□□□□□ -0.31
TCOF1-211ENST00000513346 RIOK3O14730 519 aaKnown RBP13.14□□□□□ -0.31
TCOF1-211ENST00000513346 FAM107BQ9H098 131 aa13.14□□□□□ -0.31
TCOF1-211ENST00000513346 SIL1Q9H173 461 aa13.14□□□□□ -0.31
TCOF1-211ENST00000513346 C19orf44Q9H6X5 657 aa13.14□□□□□ -0.31
TCOF1-211ENST00000513346 PLCD3Q8N3E9 789 aa13.14□□□□□ -0.31
TCOF1-211ENST00000513346 CFAP100Q494V2 611 aa13.14□□□□□ -0.31
TCOF1-211ENST00000513346 JAKMIP3Q5VZ66 844 aa13.14□□□□□ -0.31
TCOF1-211ENST00000513346 USHBP1Q8N6Y0 703 aa13.14□□□□□ -0.31
TCOF1-211ENST00000513346 LMBRD1Q9NUN5 540 aa13.14□□□□□ -0.31
TCOF1-211ENST00000513346 CNPY2Q9Y2B0 182 aa13.14□□□□□ -0.31
TCOF1-211ENST00000513346 SKILP12757 684 aa13.13□□□□□ -0.31
TCOF1-211ENST00000513346 CASQ1P31415 396 aa13.13□□□□□ -0.31
TCOF1-211ENST00000513346 CCDC158Q5M9N0 1113 aa13.13□□□□□ -0.31
TCOF1-211ENST00000513346 CCDC191Q8NCU4 936 aa13.13□□□□□ -0.31
TCOF1-211ENST00000513346 GPATCH11Q8N954 259 aa13.13□□□□□ -0.31
TCOF1-211ENST00000513346 ARHGAP45Q92619 1136 aa13.13□□□□□ -0.31
TCOF1-211ENST00000513346 TCEAL9Q9UHQ7 104 aa13.13□□□□□ -0.31
TCOF1-211ENST00000513346 CCDC47Q96A33 483 aaKnown RBP13.12□□□□□ -0.31
TCOF1-211ENST00000513346 SRGAP3O43295 1099 aa13.12□□□□□ -0.31
TCOF1-211ENST00000513346 GJB2P29033 226 aa13.12□□□□□ -0.31
TCOF1-211ENST00000513346 ANAPC15P60006 121 aa13.12□□□□□ -0.31
TCOF1-211ENST00000513346 GIMAP7Q8NHV1 300 aa13.12□□□□□ -0.31
TCOF1-211ENST00000513346 CARD14Q9BXL6 1004 aa13.12□□□□□ -0.31
TCOF1-211ENST00000513346 DACH1Q9UI36 760 aa13.12□□□□□ -0.31
TCOF1-211ENST00000513346 ASXL1Q8IXJ9 1541 aa13.12□□□□□ -0.31
TCOF1-211ENST00000513346 BLMP54132 1417 aaPredicted RBP13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms