RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 TFIP11Q9UBB9 837 aaKnown RBP9.94□□□□□ -0.82
LIMCH1-216ENST00000512820 ABCC4O15439 1325 aa9.94□□□□□ -0.82
LIMCH1-216ENST00000512820 G2E3Q7L622 706 aa9.94□□□□□ -0.82
LIMCH1-216ENST00000512820 EVI5LQ96CN4 794 aa9.94□□□□□ -0.82
LIMCH1-216ENST00000512820 RIMS2Q9UQ26 1411 aa9.94□□□□□ -0.82
LIMCH1-216ENST00000512820 OLFM4Q6UX06 510 aa9.94□□□□□ -0.82
LIMCH1-216ENST00000512820 PRDM10Q9NQV6 1147 aa9.94□□□□□ -0.82
LIMCH1-216ENST00000512820 NOL7Q9UMY1 257 aaKnown RBP9.94□□□□□ -0.82
LIMCH1-216ENST00000512820 DHX16O60231 1041 aaKnown RBP9.94□□□□□ -0.82
LIMCH1-216ENST00000512820 KDM4AO75164 1064 aa9.94□□□□□ -0.82
LIMCH1-216ENST00000512820 TPM1P09493 284 aa9.94□□□□□ -0.82
LIMCH1-216ENST00000512820 GOLGA6L1Q8N7Z2 621 aa9.94□□□□□ -0.82
LIMCH1-216ENST00000512820 AMOTL2Q9Y2J4 779 aa9.94□□□□□ -0.82
LIMCH1-216ENST00000512820 PES1O00541 588 aaKnown RBP9.93□□□□□ -0.82
LIMCH1-216ENST00000512820 CBX1P83916 185 aa9.93□□□□□ -0.82
LIMCH1-216ENST00000512820 NOLC1Q14978 699 aaKnown RBP eCLIP9.93□□□□□ -0.82
LIMCH1-216ENST00000512820 CEP57L1Q8IYX8 460 aa9.93□□□□□ -0.82
LIMCH1-216ENST00000512820 TEX35Q5T0J7 233 aa9.93□□□□□ -0.82
LIMCH1-216ENST00000512820 MPRIPQ6WCQ1 1025 aa9.93□□□□□ -0.82
LIMCH1-216ENST00000512820 DBF4Q9UBU7 674 aaPredicted RBP9.93□□□□□ -0.82
LIMCH1-216ENST00000512820 UGGT1Q9NYU2 1555 aa9.93□□□□□ -0.82
LIMCH1-216ENST00000512820 PREX2Q70Z35 1606 aa9.93□□□□□ -0.82
LIMCH1-216ENST00000512820 ADCY10Q96PN6 1610 aa9.93□□□□□ -0.82
LIMCH1-216ENST00000512820 CDC42BPAQ5VT25 1732 aa9.93□□□□□ -0.82
LIMCH1-216ENST00000512820 MYOM2P54296 1465 aa9.93□□□□□ -0.82
LIMCH1-216ENST00000512820 CHL1O00533 1208 aa9.93□□□□□ -0.82
LIMCH1-216ENST00000512820 CD2BP2O95400 341 aaKnown RBP9.93□□□□□ -0.82
LIMCH1-216ENST00000512820 ANXA1P04083 346 aa9.93□□□□□ -0.82
LIMCH1-216ENST00000512820 SAFBQ15424 915 aaKnown RBP eCLIP9.93□□□□□ -0.82
LIMCH1-216ENST00000512820 NECAB1Q8N987 351 aa9.93□□□□□ -0.82
LIMCH1-216ENST00000512820 PRIMPOLQ96LW4 560 aa9.93□□□□□ -0.82
LIMCH1-216ENST00000512820 TTC12Q9H892 705 aaPredicted RBP9.93□□□□□ -0.82
LIMCH1-216ENST00000512820 PDILTQ8N807 584 aa9.93□□□□□ -0.82
LIMCH1-216ENST00000512820 F13A1P00488 732 aa9.92□□□□□ -0.82
LIMCH1-216ENST00000512820 DDX19AQ9NUU7 478 aaKnown RBP9.92□□□□□ -0.82
LIMCH1-216ENST00000512820 TATP17735 454 aaPredicted RBP9.92□□□□□ -0.82
LIMCH1-216ENST00000512820 AK2P54819 239 aa9.92□□□□□ -0.82
LIMCH1-216ENST00000512820 GPS2Q13227 327 aa9.92□□□□□ -0.82
LIMCH1-216ENST00000512820 MAP3K2Q9Y2U5 619 aa9.92□□□□□ -0.82
LIMCH1-216ENST00000512820 PLXNC1O60486 1568 aa9.91□□□□□ -0.82
LIMCH1-216ENST00000512820 DNM1Q05193 864 aaKnown RBP9.91□□□□□ -0.82
LIMCH1-216ENST00000512820 CLIP2Q9UDT6 1046 aa9.91□□□□□ -0.82
LIMCH1-216ENST00000512820 PHF23Q9BUL5 403 aaPredicted RBP9.91□□□□□ -0.82
LIMCH1-216ENST00000512820 TULP1O00294 542 aaPredicted RBP9.91□□□□□ -0.82
LIMCH1-216ENST00000512820 PKP1Q13835 747 aa9.91□□□□□ -0.82
LIMCH1-216ENST00000512820 TSR1Q2NL82 804 aaKnown RBP9.91□□□□□ -0.82
LIMCH1-216ENST00000512820 LARP1Q6PKG0 1096 aaKnown RBP9.91□□□□□ -0.82
LIMCH1-216ENST00000512820 C16orf45Q96MC5 204 aaPredicted RBP9.91□□□□□ -0.82
LIMCH1-216ENST00000512820 MYO5CQ9NQX4 1742 aa9.91□□□□□ -0.82
LIMCH1-216ENST00000512820 CHPF2Q9P2E5 772 aa9.91□□□□□ -0.82
LIMCH1-216ENST00000512820 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP9.91□□□□□ -0.82
LIMCH1-216ENST00000512820 CCDC158Q5M9N0 1113 aa9.9□□□□□ -0.82
LIMCH1-216ENST00000512820 PPP1R9BQ96SB3 815 aa9.9□□□□□ -0.82
LIMCH1-216ENST00000512820 IQGAP3Q86VI3 1631 aa9.9□□□□□ -0.82
LIMCH1-216ENST00000512820 SERPINC1P01008 464 aa9.9□□□□□ -0.82
LIMCH1-216ENST00000512820 TNNT1P13805 278 aa9.9□□□□□ -0.82
LIMCH1-216ENST00000512820 KCNH5Q8NCM2 988 aa9.9□□□□□ -0.82
LIMCH1-216ENST00000512820 TMEM63CQ9P1W3 806 aa9.9□□□□□ -0.82
LIMCH1-216ENST00000512820 SOS1Q07889 1333 aaPredicted RBP9.9□□□□□ -0.82
LIMCH1-216ENST00000512820 CCP110O43303 1012 aa9.9□□□□□ -0.82
LIMCH1-216ENST00000512820 ZNF165P49910 485 aa9.9□□□□□ -0.82
LIMCH1-216ENST00000512820 BRPF1P55201 1214 aaPredicted RBP9.9□□□□□ -0.82
LIMCH1-216ENST00000512820 TCEANC2Q96MN5 208 aa9.9□□□□□ -0.82
LIMCH1-216ENST00000512820 KIF24Q5T7B8 1368 aa9.9□□□□□ -0.82
LIMCH1-216ENST00000512820 CROCC2H7BZ55 1655 aa9.9□□□□□ -0.82
LIMCH1-216ENST00000512820 EDC4Q6P2E9 1401 aaKnown RBP9.9□□□□□ -0.83
LIMCH1-216ENST00000512820 ERICH2A1L162 156 aa9.9□□□□□ -0.83
LIMCH1-216ENST00000512820 FKBP4Q02790 459 aaKnown RBP eCLIP9.9□□□□□ -0.83
LIMCH1-216ENST00000512820 TTC39AQ5SRH9 613 aa9.9□□□□□ -0.83
LIMCH1-216ENST00000512820 SYT1P21579 422 aa9.89□□□□□ -0.83
LIMCH1-216ENST00000512820 PTPN14Q15678 1187 aa9.89□□□□□ -0.83
LIMCH1-216ENST00000512820 AMOTQ4VCS5 1084 aa9.89□□□□□ -0.83
LIMCH1-216ENST00000512820 PPP4R3BQ5MIZ7 849 aa9.89□□□□□ -0.83
LIMCH1-216ENST00000512820 JMYQ8N9B5 988 aa9.89□□□□□ -0.83
LIMCH1-216ENST00000512820 MYD88Q99836 296 aa9.89□□□□□ -0.83
LIMCH1-216ENST00000512820 HYPKQ9NX55 129 aa9.89□□□□□ -0.83
LIMCH1-216ENST00000512820 RBM8AQ9Y5S9 174 aaKnown RBP9.89□□□□□ -0.83
LIMCH1-216ENST00000512820 TTC21AQ8NDW8 1320 aa9.89□□□□□ -0.83
LIMCH1-216ENST00000512820 EVA1CP58658 441 aa9.89□□□□□ -0.83
LIMCH1-216ENST00000512820 EYA1Q99502 592 aa9.89□□□□□ -0.83
LIMCH1-216ENST00000512820 ANO10Q9NW15 660 aa9.89□□□□□ -0.83
LIMCH1-216ENST00000512820 ATP2B1P20020 1258 aa9.89□□□□□ -0.83
LIMCH1-216ENST00000512820 FAM200AQ8TCP9 573 aa9.89□□□□□ -0.83
LIMCH1-216ENST00000512820 POLR1AO95602 1720 aaPredicted RBP9.89□□□□□ -0.83
LIMCH1-216ENST00000512820 CABP4P57796 275 aa9.89□□□□□ -0.83
LIMCH1-216ENST00000512820 DHX8Q14562 1220 aaKnown RBP9.89□□□□□ -0.83
LIMCH1-216ENST00000512820 ANKRD20A12PQ8NF67 263 aa9.89□□□□□ -0.83
LIMCH1-216ENST00000512820 GUCY1B3Q02153 619 aa9.88□□□□□ -0.83
LIMCH1-216ENST00000512820 U3KPZ7 1027 aaPredicted RBP9.88□□□□□ -0.83
LIMCH1-216ENST00000512820 PNMA6EA0A0J9YXQ4 647 aa9.88□□□□□ -0.83
LIMCH1-216ENST00000512820 SIRT2Q8IXJ6 389 aa9.88□□□□□ -0.83
LIMCH1-216ENST00000512820 A0A0U1RQG5 324 aaPredicted RBP9.88□□□□□ -0.83
LIMCH1-216ENST00000512820 BRD1O95696 1058 aa9.88□□□□□ -0.83
LIMCH1-216ENST00000512820 CPA1P15085 419 aa9.88□□□□□ -0.83
LIMCH1-216ENST00000512820 CTNNA3Q9UI47 895 aa9.88□□□□□ -0.83
LIMCH1-216ENST00000512820 MAP3K19Q56UN5 1328 aa9.88□□□□□ -0.83
LIMCH1-216ENST00000512820 UNC13BO14795 1591 aa9.88□□□□□ -0.83
LIMCH1-216ENST00000512820 CTAGE5O15320 804 aa9.88□□□□□ -0.83
LIMCH1-216ENST00000512820 PHAXQ9H814 394 aaKnown RBP9.88□□□□□ -0.83
LIMCH1-216ENST00000512820 DACT1Q9NYF0 836 aa9.88□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms