RNA–Protein interactions for RNA: ENST00000512531.1

MSH3-203, Transcript of mutS homolog 3, humanhuman

TSL 5

Gene MSH3, Length 531 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3-203ENST00000512531 A0A1W2PP64 1363 aa12.26□□□□□ -0.45
MSH3-203ENST00000512531 GPR37O15354 613 aa12.25□□□□□ -0.45
MSH3-203ENST00000512531 RTL1A6NKG5 1358 aa12.24□□□□□ -0.45
MSH3-203ENST00000512531 UTRNP46939 3433 aa12.24□□□□□ -0.45
MSH3-203ENST00000512531 GPIHBP1Q8IV16 184 aa12.24□□□□□ -0.45
MSH3-203ENST00000512531 GPHNQ9NQX3 736 aaPredicted RBP12.24□□□□□ -0.45
MSH3-203ENST00000512531 ANKRD26Q9UPS8 1709 aa12.24□□□□□ -0.45
MSH3-203ENST00000512531 PNPLA7Q6ZV29 1317 aa12.23□□□□□ -0.45
MSH3-203ENST00000512531 MAPK8IP3Q9UPT6 1336 aa12.23□□□□□ -0.45
MSH3-203ENST00000512531 DPYSL4O14531 572 aa12.23□□□□□ -0.45
MSH3-203ENST00000512531 APAF1O14727 1248 aa12.23□□□□□ -0.45
MSH3-203ENST00000512531 MTHFSP49914 203 aa12.23□□□□□ -0.45
MSH3-203ENST00000512531 CCDC27Q2M243 656 aa12.23□□□□□ -0.45
MSH3-203ENST00000512531 WDR63Q8IWG1 891 aa12.23□□□□□ -0.45
MSH3-203ENST00000512531 DDX54Q8TDD1 881 aaKnown RBP12.23□□□□□ -0.45
MSH3-203ENST00000512531 COG3Q96JB2 828 aa12.23□□□□□ -0.45
MSH3-203ENST00000512531 ZNF521Q96K83 1311 aa12.22□□□□□ -0.45
MSH3-203ENST00000512531 HOXC9P31274 260 aa12.22□□□□□ -0.45
MSH3-203ENST00000512531 C1QTNF8P60827 252 aa12.22□□□□□ -0.45
MSH3-203ENST00000512531 SLFN5Q08AF3 891 aa12.22□□□□□ -0.45
MSH3-203ENST00000512531 AAMPQ13685 434 aa12.22□□□□□ -0.45
MSH3-203ENST00000512531 GPR162Q16538 588 aa12.22□□□□□ -0.45
MSH3-203ENST00000512531 ZCRB1Q8TBF4 217 aaKnown RBP12.22□□□□□ -0.45
MSH3-203ENST00000512531 MYH16Q9H6N6 1097 aa12.22□□□□□ -0.45
MSH3-203ENST00000512531 TFCP2L1Q9NZI6 479 aa12.22□□□□□ -0.45
MSH3-203ENST00000512531 LY75O60449 1722 aa12.22□□□□□ -0.45
MSH3-203ENST00000512531 MAP3K19Q56UN5 1328 aa12.21□□□□□ -0.45
MSH3-203ENST00000512531 TRIM66O15016 1216 aa12.21□□□□□ -0.45
MSH3-203ENST00000512531 MS4A1P11836 297 aa12.21□□□□□ -0.45
MSH3-203ENST00000512531 PRIM1P49642 420 aaKnown RBP12.21□□□□□ -0.45
MSH3-203ENST00000512531 DUSP27Q5VZP5 1158 aa12.21□□□□□ -0.45
MSH3-203ENST00000512531 DPY19L2Q6NUT2 758 aa12.21□□□□□ -0.45
MSH3-203ENST00000512531 CDCA7LQ96GN5 454 aa12.21□□□□□ -0.45
MSH3-203ENST00000512531 RBM19Q9Y4C8 960 aaKnown RBP12.21□□□□□ -0.45
MSH3-203ENST00000512531 GRIN3BO60391 1043 aa12.2□□□□□ -0.46
MSH3-203ENST00000512531 CT47B1P0C2W7 299 aaPredicted RBP12.2□□□□□ -0.46
MSH3-203ENST00000512531 CANXP27824 592 aaKnown RBP12.2□□□□□ -0.46
MSH3-203ENST00000512531 TNNT2P45379 298 aaPredicted RBP12.2□□□□□ -0.46
MSH3-203ENST00000512531 AMPHP49418 695 aa12.2□□□□□ -0.46
MSH3-203ENST00000512531 DSG2Q14126 1118 aa12.2□□□□□ -0.46
MSH3-203ENST00000512531 CCDC146Q8IYE0 955 aa12.2□□□□□ -0.46
MSH3-203ENST00000512531 IL27Q8NEV9 243 aa12.2□□□□□ -0.46
MSH3-203ENST00000512531 KDM4CQ9H3R0 1056 aa12.2□□□□□ -0.46
MSH3-203ENST00000512531 DAXXQ9UER7 740 aaPredicted RBP12.2□□□□□ -0.46
MSH3-203ENST00000512531 KIF20BQ96Q89 1820 aa12.2□□□□□ -0.46
MSH3-203ENST00000512531 KIF24Q5T7B8 1368 aa12.19□□□□□ -0.46
MSH3-203ENST00000512531 U2AF1L5P0DN76 240 aaPredicted RBP12.19□□□□□ -0.46
MSH3-203ENST00000512531 U2AF1Q01081 240 aaKnown RBP eCLIP12.19□□□□□ -0.46
MSH3-203ENST00000512531 CALD1Q05682 793 aaKnown RBP12.19□□□□□ -0.46
MSH3-203ENST00000512531 PDIA6Q15084 440 aa12.19□□□□□ -0.46
MSH3-203ENST00000512531 FLAD1Q8NFF5 587 aa12.19□□□□□ -0.46
MSH3-203ENST00000512531 TCERG1O14776 1098 aaKnown RBP12.18□□□□□ -0.46
MSH3-203ENST00000512531 DIAPH1O60610 1272 aaKnown RBP12.18□□□□□ -0.46
MSH3-203ENST00000512531 MKRN3Q13064 507 aaKnown RBP12.18□□□□□ -0.46
MSH3-203ENST00000512531 SYTL4Q96C24 671 aaPredicted RBP12.18□□□□□ -0.46
MSH3-203ENST00000512531 LTV1Q96GA3 475 aaPredicted RBP12.18□□□□□ -0.46
MSH3-203ENST00000512531 CCNL1Q9UK58 526 aaPredicted RBP12.18□□□□□ -0.46
MSH3-203ENST00000512531 MEGF6O75095 1541 aa12.17□□□□□ -0.46
MSH3-203ENST00000512531 TTLL13PA6NNM8 815 aa12.17□□□□□ -0.46
MSH3-203ENST00000512531 TRMT2AQ8IZ69 625 aaKnown RBP12.17□□□□□ -0.46
MSH3-203ENST00000512531 RAPGEF4Q8WZA2 1011 aa12.17□□□□□ -0.46
MSH3-203ENST00000512531 DOT1LQ8TEK3 1739 aa12.17□□□□□ -0.46
MSH3-203ENST00000512531 SHANK3Q9BYB0 1731 aa12.17□□□□□ -0.46
MSH3-203ENST00000512531 TUBGCP6Q96RT7 1819 aa12.16□□□□□ -0.46
MSH3-203ENST00000512531 FANCIQ9NVI1 1328 aa12.16□□□□□ -0.46
MSH3-203ENST00000512531 SENP3-EIF4A1A0A087X0R7 540 aa12.16□□□□□ -0.46
MSH3-203ENST00000512531 GIGYF1O75420 1035 aaPredicted RBP12.16□□□□□ -0.46
MSH3-203ENST00000512531 PDE4DQ08499 809 aa12.16□□□□□ -0.46
MSH3-203ENST00000512531 NBPF6Q5VWK0 638 aa12.16□□□□□ -0.46
MSH3-203ENST00000512531 WWC1Q8IX03 1113 aa12.16□□□□□ -0.46
MSH3-203ENST00000512531 NBPF4Q96M43 638 aa12.16□□□□□ -0.46
MSH3-203ENST00000512531 CD2APQ9Y5K6 639 aa12.16□□□□□ -0.46
MSH3-203ENST00000512531 PCDH11XQ9BZA7 1347 aa12.15□□□□□ -0.46
MSH3-203ENST00000512531 PCDH11YQ9BZA8 1340 aa12.15□□□□□ -0.46
MSH3-203ENST00000512531 U2SURPO15042 1029 aaKnown RBP12.15□□□□□ -0.46
MSH3-203ENST00000512531 FYB1O15117 783 aa12.15□□□□□ -0.46
MSH3-203ENST00000512531 TATP17735 454 aaPredicted RBP12.15□□□□□ -0.46
MSH3-203ENST00000512531 PDE3AQ14432 1141 aa12.15□□□□□ -0.46
MSH3-203ENST00000512531 COL23A1Q86Y22 540 aaPredicted RBP12.15□□□□□ -0.46
MSH3-203ENST00000512531 KRI1Q8N9T8 703 aaKnown RBP12.15□□□□□ -0.46
MSH3-203ENST00000512531 EXOC6Q8TAG9 804 aa12.15□□□□□ -0.46
MSH3-203ENST00000512531 CENPQQ7L2Z9 268 aaPredicted RBP12.14□□□□□ -0.47
MSH3-203ENST00000512531 NLGN2Q8NFZ4 835 aa12.14□□□□□ -0.47
MSH3-203ENST00000512531 SMARCC1Q92922 1105 aaPredicted RBP12.14□□□□□ -0.47
MSH3-203ENST00000512531 GGNBP2Q9H3C7 697 aa12.14□□□□□ -0.47
MSH3-203ENST00000512531 BMP2KQ9NSY1 1161 aaPredicted RBP12.14□□□□□ -0.47
MSH3-203ENST00000512531 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.14□□□□□ -0.473e-7■■■■■ 31.3
MSH3-203ENST00000512531 IL16Q14005 1332 aa12.13□□□□□ -0.47
MSH3-203ENST00000512531 FCHSD2O94868 740 aa12.13□□□□□ -0.47
MSH3-203ENST00000512531 ANP32AP39687 249 aaKnown RBP12.13□□□□□ -0.47
MSH3-203ENST00000512531 KCNQ4P56696 695 aa12.13□□□□□ -0.47
MSH3-203ENST00000512531 LMOD3Q0VAK6 560 aa12.13□□□□□ -0.47
MSH3-203ENST00000512531 POTEHQ6S545 545 aa12.13□□□□□ -0.47
MSH3-203ENST00000512531 FLT4P35916 1363 aa12.13□□□□□ -0.47
MSH3-203ENST00000512531 RGPD2P0DJD1 1756 aa12.13□□□□□ -0.47
MSH3-203ENST00000512531 TIE1P35590 1138 aa12.12□□□□□ -0.47
MSH3-203ENST00000512531 NCAPD2Q15021 1401 aa12.11□□□□□ -0.47
MSH3-203ENST00000512531 PALLDQ8WX93 1383 aa12.11□□□□□ -0.47
MSH3-203ENST00000512531 PLEKHG2Q9H7P9 1386 aa12.11□□□□□ -0.47
MSH3-203ENST00000512531 YBX3P16989 372 aaKnown RBP eCLIP12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms