RNA–Protein interactions for RNA: ENST00000511424.5

LIMCH1-212, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 3

Gene LIMCH1, Length 551 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-212ENST00000511424 SLC4A9Q96Q91 983 aa5.36□□□□□ -1.55
LIMCH1-212ENST00000511424 SCHIP1Q9P0W5 487 aaPredicted RBP5.36□□□□□ -1.55
LIMCH1-212ENST00000511424 SLURP2P0DP57 97 aa5.35□□□□□ -1.55
LIMCH1-212ENST00000511424 BMP4P12644 408 aa5.35□□□□□ -1.55
LIMCH1-212ENST00000511424 MTFR1Q15390 333 aa5.35□□□□□ -1.55
LIMCH1-212ENST00000511424 ZNF385CQ66K41 422 aaPredicted RBP5.35□□□□□ -1.55
LIMCH1-212ENST00000511424 SLC9A9Q8IVB4 645 aa5.35□□□□□ -1.55
LIMCH1-212ENST00000511424 L3MBTL2Q969R5 705 aa5.35□□□□□ -1.55
LIMCH1-212ENST00000511424 HINFPQ9BQA5 517 aa5.35□□□□□ -1.55
LIMCH1-212ENST00000511424 CFHR5Q9BXR6 569 aa5.35□□□□□ -1.55
LIMCH1-212ENST00000511424 PPP1R12CQ9BZL4 782 aa5.35□□□□□ -1.55
LIMCH1-212ENST00000511424 ADAMTS8Q9UP79 889 aa5.35□□□□□ -1.55
LIMCH1-212ENST00000511424 KIAA1024Q9UPX6 916 aa5.35□□□□□ -1.55
LIMCH1-212ENST00000511424 MAFBQ9Y5Q3 323 aaPredicted RBP5.35□□□□□ -1.55
LIMCH1-212ENST00000511424 USP3Q9Y6I4 520 aa5.35□□□□□ -1.55
LIMCH1-212ENST00000511424 A0A1W2PNR3 127 aa5.34□□□□□ -1.55
LIMCH1-212ENST00000511424 SERTM1A2A2V5 107 aa5.34□□□□□ -1.55
LIMCH1-212ENST00000511424 DCDC2BA2VCK2 349 aa5.34□□□□□ -1.55
LIMCH1-212ENST00000511424 SFI1A8K8P3 1242 aa5.34□□□□□ -1.55
LIMCH1-212ENST00000511424 RNF225M0QZC1 329 aaPredicted RBP5.34□□□□□ -1.55
LIMCH1-212ENST00000511424 LYPD4Q6UWN0 246 aa5.34□□□□□ -1.55
LIMCH1-212ENST00000511424 TSEN2Q8NCE0 465 aaKnown RBP5.34□□□□□ -1.55
LIMCH1-212ENST00000511424 CHMP7Q8WUX9 453 aaPredicted RBP5.34□□□□□ -1.55
LIMCH1-212ENST00000511424 CRISPLD1Q9H336 500 aa5.34□□□□□ -1.55
LIMCH1-212ENST00000511424 VRTNQ9H8Y1 702 aa5.34□□□□□ -1.55
LIMCH1-212ENST00000511424 ATXN7L1Q9ULK2 861 aaPredicted RBP5.34□□□□□ -1.55
LIMCH1-212ENST00000511424 KHNYNO15037 678 aaKnown RBP5.33□□□□□ -1.56
LIMCH1-212ENST00000511424 ZBTB7BO15156 539 aaPredicted RBP5.33□□□□□ -1.56
LIMCH1-212ENST00000511424 ATXN7O15265 892 aaPredicted RBP5.33□□□□□ -1.56
LIMCH1-212ENST00000511424 CELA2BP08218 269 aaPredicted RBP5.33□□□□□ -1.56
LIMCH1-212ENST00000511424 ATP4AP20648 1035 aa5.33□□□□□ -1.56
LIMCH1-212ENST00000511424 FGFR3P22607 806 aa5.33□□□□□ -1.56
LIMCH1-212ENST00000511424 RFX1P22670 979 aa5.33□□□□□ -1.56
LIMCH1-212ENST00000511424 NOS2P35228 1153 aa5.33□□□□□ -1.56
LIMCH1-212ENST00000511424 MAP2K3P46734 347 aa5.33□□□□□ -1.56
LIMCH1-212ENST00000511424 OXCT2Q9BYC2 517 aaPredicted RBP5.33□□□□□ -1.56
LIMCH1-212ENST00000511424 ZCCHC2Q9C0B9 1178 aaKnown RBP5.33□□□□□ -1.56
LIMCH1-212ENST00000511424 TSPAN10Q9H1Z9 355 aaPredicted RBP5.33□□□□□ -1.56
LIMCH1-212ENST00000511424 ZDHHC3Q9NYG2 299 aa5.33□□□□□ -1.56
LIMCH1-212ENST00000511424 IQSEC3Q9UPP2 1182 aaPredicted RBP5.33□□□□□ -1.56
LIMCH1-212ENST00000511424 PCDHGC4Q9Y5F7 938 aa5.33□□□□□ -1.56
LIMCH1-212ENST00000511424 PPP1R12BO60237 982 aaPredicted RBP5.32□□□□□ -1.56
LIMCH1-212ENST00000511424 BNIP3LO60238 219 aa5.32□□□□□ -1.56
LIMCH1-212ENST00000511424 BCRP11274 1271 aa5.32□□□□□ -1.56
LIMCH1-212ENST00000511424 AMPD1P23109 780 aa5.32□□□□□ -1.56
LIMCH1-212ENST00000511424 TXLNAP40222 546 aa5.32□□□□□ -1.56
LIMCH1-212ENST00000511424 SEC13P55735 322 aa5.32□□□□□ -1.56
LIMCH1-212ENST00000511424 LRRC69Q6ZNQ3 347 aa5.32□□□□□ -1.56
LIMCH1-212ENST00000511424 PODNQ7Z5L7 613 aa5.32□□□□□ -1.56
LIMCH1-212ENST00000511424 NLRP8Q86W28 1048 aa5.32□□□□□ -1.56
LIMCH1-212ENST00000511424 RHPN1Q8TCX5 695 aa5.32□□□□□ -1.56
LIMCH1-212ENST00000511424 RRAGCQ9HB90 399 aa5.32□□□□□ -1.56
LIMCH1-212ENST00000511424 HCN4Q9Y3Q4 1203 aa5.32□□□□□ -1.56
LIMCH1-212ENST00000511424 LGR5O75473 907 aa5.31□□□□□ -1.56
LIMCH1-212ENST00000511424 THBS1P07996 1170 aa5.31□□□□□ -1.56
LIMCH1-212ENST00000511424 PSMA6P60900 246 aaKnown RBP5.31□□□□□ -1.56
LIMCH1-212ENST00000511424 TEAD4Q15561 434 aa5.31□□□□□ -1.56
LIMCH1-212ENST00000511424 CDCA8Q53HL2 280 aa5.31□□□□□ -1.56
LIMCH1-212ENST00000511424 SIX5Q8N196 739 aa5.31□□□□□ -1.56
LIMCH1-212ENST00000511424 SCG3Q8WXD2 468 aaKnown RBP5.31□□□□□ -1.56
LIMCH1-212ENST00000511424 ACDQ96AP0 544 aa5.31□□□□□ -1.56
LIMCH1-212ENST00000511424 SCARF2Q96GP6 870 aaPredicted RBP5.31□□□□□ -1.56
LIMCH1-212ENST00000511424 NGLY1Q96IV0 654 aa5.31□□□□□ -1.56
LIMCH1-212ENST00000511424 PRR12Q9ULL5 1215 aa5.31□□□□□ -1.56
LIMCH1-212ENST00000511424 USP17L15C9J2P7 530 aa5.3□□□□□ -1.56
LIMCH1-212ENST00000511424 USP17L10C9JJH3 530 aa5.3□□□□□ -1.56
LIMCH1-212ENST00000511424 USP17L13C9JLJ4 530 aa5.3□□□□□ -1.56
LIMCH1-212ENST00000511424 USP17L12C9JPN9 530 aa5.3□□□□□ -1.56
LIMCH1-212ENST00000511424 USP17L11C9JVI0 530 aa5.3□□□□□ -1.56
LIMCH1-212ENST00000511424 USP17L21D6R901 530 aa5.3□□□□□ -1.56
LIMCH1-212ENST00000511424 USP17L18D6R9N7 530 aa5.3□□□□□ -1.56
LIMCH1-212ENST00000511424 USP17L22D6RA61 530 aa5.3□□□□□ -1.56
LIMCH1-212ENST00000511424 USP17L17D6RBQ6 530 aa5.3□□□□□ -1.56
LIMCH1-212ENST00000511424 USP17L19D6RCP7 530 aa5.3□□□□□ -1.56
LIMCH1-212ENST00000511424 USP17L20D6RJB6 530 aa5.3□□□□□ -1.56
LIMCH1-212ENST00000511424 CD33P20138 364 aa5.3□□□□□ -1.56
LIMCH1-212ENST00000511424 IRS1P35568 1242 aa5.3□□□□□ -1.56
LIMCH1-212ENST00000511424 FOXK2Q01167 660 aa5.3□□□□□ -1.56
LIMCH1-212ENST00000511424 CTBSQ01459 385 aa5.3□□□□□ -1.56
LIMCH1-212ENST00000511424 USP17L24Q0WX57 530 aa5.3□□□□□ -1.56
LIMCH1-212ENST00000511424 DPYDQ12882 1025 aa5.3□□□□□ -1.56
LIMCH1-212ENST00000511424 CRTC2Q53ET0 693 aaPredicted RBP5.3□□□□□ -1.56
LIMCH1-212ENST00000511424 GALNT6Q8NCL4 622 aa5.3□□□□□ -1.56
LIMCH1-212ENST00000511424 ZDHHC1Q8WTX9 485 aa5.3□□□□□ -1.56
LIMCH1-212ENST00000511424 KLRG1Q96E93 195 aa5.3□□□□□ -1.56
LIMCH1-212ENST00000511424 ZIC5Q96T25 663 aa5.3□□□□□ -1.56
LIMCH1-212ENST00000511424 GDF2Q9UK05 429 aaPredicted RBP5.3□□□□□ -1.56
LIMCH1-212ENST00000511424 GTF3C3Q9Y5Q9 886 aa5.3□□□□□ -1.56
LIMCH1-212ENST00000511424 NISCHQ9Y2I1 1504 aa5.29□□□□□ -1.56
LIMCH1-212ENST00000511424 MAPTP10636 758 aaKnown RBP5.29□□□□□ -1.56
LIMCH1-212ENST00000511424 EPHA4P54764 986 aa5.29□□□□□ -1.56
LIMCH1-212ENST00000511424 SH3PXD2AQ5TCZ1 1133 aa5.29□□□□□ -1.56
LIMCH1-212ENST00000511424 ANKMY2Q8IV38 441 aa5.29□□□□□ -1.56
LIMCH1-212ENST00000511424 GOLGA6L1Q8N7Z2 621 aa5.29□□□□□ -1.56
LIMCH1-212ENST00000511424 VTI1AQ96AJ9 217 aa5.29□□□□□ -1.56
LIMCH1-212ENST00000511424 ZMYND15Q9H091 742 aa5.29□□□□□ -1.56
LIMCH1-212ENST00000511424 GGA1Q9UJY5 639 aa5.29□□□□□ -1.56
LIMCH1-212ENST00000511424 DNMT3AQ9Y6K1 912 aaPredicted RBP5.29□□□□□ -1.56
LIMCH1-212ENST00000511424 ATAD2Q6PL18 1390 aa5.29□□□□□ -1.56
LIMCH1-212ENST00000511424 FAM196BA6NMK8 535 aa5.28□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms