RNA–Protein interactions for RNA: ENST00000510852.1

USP53-207, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 2

Gene USP53, Length 2,437 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-207ENST00000510852 SF3A1Q15459 793 aaKnown RBP12.1□□□□□ -0.47
USP53-207ENST00000510852 NRBP1Q9UHY1 535 aa12.1□□□□□ -0.47
USP53-207ENST00000510852 STK25O00506 426 aa12.09□□□□□ -0.47
USP53-207ENST00000510852 IRF6O14896 467 aa12.09□□□□□ -0.47
USP53-207ENST00000510852 TNNT2P45379 298 aaPredicted RBP12.09□□□□□ -0.47
USP53-207ENST00000510852 PTPROQ16827 1216 aa12.09□□□□□ -0.47
USP53-207ENST00000510852 SPACA7Q96KW9 195 aa12.09□□□□□ -0.47
USP53-207ENST00000510852 NPHP3Q7Z494 1330 aa12.09□□□□□ -0.47
USP53-207ENST00000510852 PPP2R1AP30153 589 aa12.09□□□□□ -0.47
USP53-207ENST00000510852 NOM1Q5C9Z4 860 aaKnown RBP12.09□□□□□ -0.47
USP53-207ENST00000510852 EGFLAMQ63HQ2 1017 aa12.08□□□□□ -0.48
USP53-207ENST00000510852 TRIM44Q96DX7 344 aaPredicted RBP12.08□□□□□ -0.48
USP53-207ENST00000510852 COG3Q96JB2 828 aa12.08□□□□□ -0.48
USP53-207ENST00000510852 NBPF9Q3BBW0 867 aa12.08□□□□□ -0.48
USP53-207ENST00000510852 NLRP13Q86W25 1043 aa12.08□□□□□ -0.48
USP53-207ENST00000510852 ABTB2Q8N961 1025 aa12.08□□□□□ -0.48
USP53-207ENST00000510852 KIF20BQ96Q89 1820 aa12.07□□□□□ -0.48
USP53-207ENST00000510852 CFAP69A5D8W1 941 aa12.07□□□□□ -0.48
USP53-207ENST00000510852 HDAC1Q13547 482 aaPredicted RBP12.07□□□□□ -0.48
USP53-207ENST00000510852 HELBQ8NG08 1087 aaPredicted RBP12.07□□□□□ -0.48
USP53-207ENST00000510852 CERKQ8TCT0 537 aa12.07□□□□□ -0.48
USP53-207ENST00000510852 ANP32BQ92688 251 aaKnown RBP12.07□□□□□ -0.48
USP53-207ENST00000510852 FBXO9Q9UK97 447 aaPredicted RBP12.07□□□□□ -0.48
USP53-207ENST00000510852 USTQ9Y2C2 406 aa12.07□□□□□ -0.48
USP53-207ENST00000510852 ZNF330Q9Y3S2 320 aaPredicted RBP12.07□□□□□ -0.48
USP53-207ENST00000510852 TOM1O60784 492 aa12.07□□□□□ -0.48
USP53-207ENST00000510852 ZRANB2O95218 330 aaKnown RBP eCLIP12.07□□□□□ -0.48
USP53-207ENST00000510852 MSL3Q8N5Y2 521 aaKnown RBP12.07□□□□□ -0.48
USP53-207ENST00000510852 PRDM4Q9UKN5 801 aa12.07□□□□□ -0.48
USP53-207ENST00000510852 OVOS2A0A0J9YW53 1432 aa12.06□□□□□ -0.48
USP53-207ENST00000510852 OVOS2Q6IE36 1432 aa12.06□□□□□ -0.48
USP53-207ENST00000510852 USP31Q70CQ4 1352 aa12.06□□□□□ -0.48
USP53-207ENST00000510852 NLRP6P59044 892 aa12.06□□□□□ -0.48
USP53-207ENST00000510852 NUTM2GQ5VZR2 741 aa12.06□□□□□ -0.48
USP53-207ENST00000510852 KCNB2Q92953 911 aa12.06□□□□□ -0.48
USP53-207ENST00000510852 IQSEC2Q5JU85 1478 aa12.06□□□□□ -0.48
USP53-207ENST00000510852 CCDC189A1A4V9 331 aa12.06□□□□□ -0.48
USP53-207ENST00000510852 SETDB1Q15047 1291 aa12.06□□□□□ -0.48
USP53-207ENST00000510852 MRS2Q9HD23 443 aa12.06□□□□□ -0.48
USP53-207ENST00000510852 PXDNQ92626 1479 aa12.05□□□□□ -0.48
USP53-207ENST00000510852 SBNO1A3KN83 1393 aa12.05□□□□□ -0.48
USP53-207ENST00000510852 UBAP1LF5GYI3 381 aa12.05□□□□□ -0.48
USP53-207ENST00000510852 JADE2Q9NQC1 790 aa12.05□□□□□ -0.48
USP53-207ENST00000510852 TMA7Q9Y2S6 64 aaKnown RBP12.05□□□□□ -0.48
USP53-207ENST00000510852 PIK3C2AO00443 1686 aa12.05□□□□□ -0.48
USP53-207ENST00000510852 ANKRD26Q9UPS8 1709 aa12.05□□□□□ -0.48
USP53-207ENST00000510852 FBLN1P23142 703 aa12.05□□□□□ -0.48
USP53-207ENST00000510852 CCDC146Q8IYE0 955 aa12.05□□□□□ -0.48
USP53-207ENST00000510852 MKL1Q969V6 931 aa12.05□□□□□ -0.48
USP53-207ENST00000510852 LNPKQ9C0E8 428 aa12.05□□□□□ -0.48
USP53-207ENST00000510852 TPX2Q9ULW0 747 aaKnown RBP12.05□□□□□ -0.48
USP53-207ENST00000510852 SOS2Q07890 1332 aaPredicted RBP12.04□□□□□ -0.48
USP53-207ENST00000510852 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP12.04□□□□□ -0.48
USP53-207ENST00000510852 WWC3Q9ULE0 1092 aa12.04□□□□□ -0.48
USP53-207ENST00000510852 COG6Q9Y2V7 657 aa12.04□□□□□ -0.48
USP53-207ENST00000510852 TRPM3Q9HCF6 1732 aaPredicted RBP12.04□□□□□ -0.48
USP53-207ENST00000510852 EVA1CP58658 441 aa12.03□□□□□ -0.48
USP53-207ENST00000510852 PIP4K2BP78356 416 aa12.03□□□□□ -0.48
USP53-207ENST00000510852 HSP90AB2PQ58FF8 381 aa12.03□□□□□ -0.48
USP53-207ENST00000510852 TBC1D12O60347 775 aa12.03□□□□□ -0.48
USP53-207ENST00000510852 LMOD3Q0VAK6 560 aa12.03□□□□□ -0.48
USP53-207ENST00000510852 ROBO1Q9Y6N7 1651 aa12.03□□□□□ -0.48
USP53-207ENST00000510852 SPATA31A3Q5VYP0 1347 aa12.03□□□□□ -0.48
USP53-207ENST00000510852 COPB2P35606 906 aa12.02□□□□□ -0.48
USP53-207ENST00000510852 MTHFSP49914 203 aa12.02□□□□□ -0.48
USP53-207ENST00000510852 PNISRQ8TF01 805 aaKnown RBP12.02□□□□□ -0.48
USP53-207ENST00000510852 TBC1D2Q9BYX2 928 aa12.02□□□□□ -0.48
USP53-207ENST00000510852 GOPCQ9HD26 462 aa12.02□□□□□ -0.48
USP53-207ENST00000510852 TNS3Q68CZ2 1445 aa12.02□□□□□ -0.49
USP53-207ENST00000510852 PUS10Q3MIT2 529 aaKnown RBP12.02□□□□□ -0.49
USP53-207ENST00000510852 NOP9Q86U38 636 aaKnown RBP12.02□□□□□ -0.49
USP53-207ENST00000510852 GIPC2Q8TF65 315 aa12.02□□□□□ -0.49
USP53-207ENST00000510852 AATKQ6ZMQ8 1374 aa12.02□□□□□ -0.49
USP53-207ENST00000510852 TLDC2A0PJX2 215 aa12.01□□□□□ -0.49
USP53-207ENST00000510852 BCL2L13Q9BXK5 485 aa12.01□□□□□ -0.49
USP53-207ENST00000510852 POLKQ9UBT6 870 aa12.01□□□□□ -0.49
USP53-207ENST00000510852 NHSL1Q5SYE7 1610 aa12.01□□□□□ -0.49
USP53-207ENST00000510852 RRS1Q15050 365 aaKnown RBP12.01□□□□□ -0.49
USP53-207ENST00000510852 SENP7Q9BQF6 1050 aa12.01□□□□□ -0.49
USP53-207ENST00000510852 ALS2Q96Q42 1657 aa12□□□□□ -0.49
USP53-207ENST00000510852 ARHGEF10O15013 1369 aa12□□□□□ -0.49
USP53-207ENST00000510852 PDAP1Q13442 181 aaKnown RBP12□□□□□ -0.49
USP53-207ENST00000510852 NLGN1Q8N2Q7 840 aa12□□□□□ -0.49
USP53-207ENST00000510852 MAP3K20Q9NYL2 800 aaKnown RBP12□□□□□ -0.49
USP53-207ENST00000510852 EMILIN1Q9Y6C2 1016 aa12□□□□□ -0.49
USP53-207ENST00000510852 USP19O94966 1318 aa12□□□□□ -0.49
USP53-207ENST00000510852 USP54Q70EL1 1684 aa11.99□□□□□ -0.49
USP53-207ENST00000510852 GPIHBP1Q8IV16 184 aa11.99□□□□□ -0.49
USP53-207ENST00000510852 PRR12Q9ULL5 1215 aa11.99□□□□□ -0.49
USP53-207ENST00000510852 MARF1Q9Y4F3 1742 aaKnown RBP11.99□□□□□ -0.49
USP53-207ENST00000510852 AHDC1Q5TGY3 1603 aaPredicted RBP11.99□□□□□ -0.49
USP53-207ENST00000510852 FEZ2Q9UHY8 353 aaPredicted RBP11.99□□□□□ -0.49
USP53-207ENST00000510852 HOXA2O43364 376 aa11.98□□□□□ -0.49
USP53-207ENST00000510852 KCNH5Q8NCM2 988 aa11.98□□□□□ -0.49
USP53-207ENST00000510852 RPS6KC1Q96S38 1066 aa11.98□□□□□ -0.49
USP53-207ENST00000510852 G3BP2Q9UN86 482 aaKnown RBP11.98□□□□□ -0.49
USP53-207ENST00000510852 KAT6BQ8WYB5 2073 aa11.98□□□□□ -0.49
USP53-207ENST00000510852 GCP02774 474 aa11.98□□□□□ -0.49
USP53-207ENST00000510852 SMG6Q86US8 1419 aaKnown RBP11.98□□□□□ -0.49
USP53-207ENST00000510852 PBXIP1Q96AQ6 731 aa11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms