RNA–Protein interactions for RNA: ENST00000508465.5

NUP54-206, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-206ENST00000508465 BNIP3LO60238 219 aa8.06□□□□□ -1.12
NUP54-206ENST00000508465 EIF4G2P78344 907 aaKnown RBP eCLIP8.06□□□□□ -1.12
NUP54-206ENST00000508465 LINC00114Q6XXX2 140 aa8.06□□□□□ -1.12
NUP54-206ENST00000508465 CRISPLD1Q9H336 500 aa8.06□□□□□ -1.12
NUP54-206ENST00000508465 DOLKQ9UPQ8 538 aa8.06□□□□□ -1.12
NUP54-206ENST00000508465 C2CD2LO14523 706 aa8.05□□□□□ -1.12
NUP54-206ENST00000508465 FURINP09958 794 aa8.05□□□□□ -1.12
NUP54-206ENST00000508465 CTBSQ01459 385 aa8.05□□□□□ -1.12
NUP54-206ENST00000508465 TLR1Q15399 786 aa8.05□□□□□ -1.12
NUP54-206ENST00000508465 SLFNL1Q499Z3 407 aa8.05□□□□□ -1.12
NUP54-206ENST00000508465 TBC1D9Q6ZT07 1266 aa8.05□□□□□ -1.12
NUP54-206ENST00000508465 BTBD6Q96KE9 485 aa8.05□□□□□ -1.12
NUP54-206ENST00000508465 NOP53Q9NZM5 478 aaKnown RBP8.05□□□□□ -1.12
NUP54-206ENST00000508465 ARAFP10398 606 aa8.04□□□□□ -1.12
NUP54-206ENST00000508465 C1orf216Q8TAB5 229 aa8.04□□□□□ -1.12
NUP54-206ENST00000508465 NDFIP2Q9NV92 336 aa8.04□□□□□ -1.12
NUP54-206ENST00000508465 PCDHGC4Q9Y5F7 938 aa8.04□□□□□ -1.12
NUP54-206ENST00000508465 GPR37L1O60883 481 aa8.03□□□□□ -1.12
NUP54-206ENST00000508465 EPXP11678 715 aa8.03□□□□□ -1.12
NUP54-206ENST00000508465 SUV39H2Q9H5I1 410 aa8.03□□□□□ -1.12
NUP54-206ENST00000508465 ETNK1Q9HBU6 452 aa8.03□□□□□ -1.12
NUP54-206ENST00000508465 SNRKQ9NRH2 765 aa8.03□□□□□ -1.12
NUP54-206ENST00000508465 URB2Q14146 1524 aaKnown RBP8.03□□□□□ -1.12
NUP54-206ENST00000508465 SLC24A1O60721 1099 aa8.02□□□□□ -1.13
NUP54-206ENST00000508465 PLA2G4AP47712 749 aa8.02□□□□□ -1.13
NUP54-206ENST00000508465 NLRP8Q86W28 1048 aa8.02□□□□□ -1.13
NUP54-206ENST00000508465 RNF135Q8IUD6 432 aa8.02□□□□□ -1.13
NUP54-206ENST00000508465 AIDAQ96BJ3 306 aa8.02□□□□□ -1.13
NUP54-206ENST00000508465 ZCCHC2Q9C0B9 1178 aaKnown RBP8.02□□□□□ -1.13
NUP54-206ENST00000508465 NEURL1BA8MQ27 555 aa8.01□□□□□ -1.13
NUP54-206ENST00000508465 C1QTNF9BB2RNN3 333 aa8.01□□□□□ -1.13
NUP54-206ENST00000508465 HOXB4P17483 251 aaPredicted RBP8.01□□□□□ -1.13
NUP54-206ENST00000508465 TSGA10IPQ3SY00 556 aa8.01□□□□□ -1.13
NUP54-206ENST00000508465 OXLD1Q5BKU9 147 aa8.01□□□□□ -1.13
NUP54-206ENST00000508465 NIFKQ9BYG3 293 aaKnown RBP8.01□□□□□ -1.13
NUP54-206ENST00000508465 WDR62O43379 1518 aa8□□□□□ -1.13
NUP54-206ENST00000508465 ATXN7O15265 892 aaPredicted RBP8□□□□□ -1.13
NUP54-206ENST00000508465 PHTF2Q8N3S3 785 aa8□□□□□ -1.13
NUP54-206ENST00000508465 Q8N3U1 123 aa8□□□□□ -1.13
NUP54-206ENST00000508465 INHAP05111 366 aa7.99□□□□□ -1.13
NUP54-206ENST00000508465 ADH6P28332 368 aa7.99□□□□□ -1.13
NUP54-206ENST00000508465 ARSJQ5FYB0 599 aaPredicted RBP7.99□□□□□ -1.13
NUP54-206ENST00000508465 CD163Q86VB7 1156 aa7.99□□□□□ -1.13
NUP54-206ENST00000508465 DGKGP49619 791 aa7.98□□□□□ -1.13
NUP54-206ENST00000508465 NBPF1Q3BBV0 1214 aa7.98□□□□□ -1.13
NUP54-206ENST00000508465 FAM182BQ5T319 152 aa7.98□□□□□ -1.13
NUP54-206ENST00000508465 CHSY3Q70JA7 882 aa7.98□□□□□ -1.13
NUP54-206ENST00000508465 AVENQ9NQS1 362 aaPredicted RBP7.98□□□□□ -1.13
NUP54-206ENST00000508465 STAU1O95793 577 aaKnown RBP7.97□□□□□ -1.13
NUP54-206ENST00000508465 SMTNP53814 917 aa7.97□□□□□ -1.13
NUP54-206ENST00000508465 GDF10P55107 478 aa7.97□□□□□ -1.13
NUP54-206ENST00000508465 MAP7D1Q3KQU3 841 aa7.97□□□□□ -1.13
NUP54-206ENST00000508465 DNAAF2Q9NVR5 837 aaKnown RBP7.97□□□□□ -1.13
NUP54-206ENST00000508465 TBC1D2BQ9UPU7 963 aa7.97□□□□□ -1.13
NUP54-206ENST00000508465 GJA3Q9Y6H8 435 aa7.97□□□□□ -1.13
NUP54-206ENST00000508465 A0A1W2PNR3 127 aa7.96□□□□□ -1.14
NUP54-206ENST00000508465 MAPTP10636 758 aaKnown RBP7.96□□□□□ -1.14
NUP54-206ENST00000508465 TATP17735 454 aaPredicted RBP7.96□□□□□ -1.14
NUP54-206ENST00000508465 TOPBP1Q92547 1522 aa7.95□□□□□ -1.14
NUP54-206ENST00000508465 KHNYNO15037 678 aaKnown RBP7.95□□□□□ -1.14
NUP54-206ENST00000508465 ATP4AP20648 1035 aa7.95□□□□□ -1.14
NUP54-206ENST00000508465 TNP2Q05952 138 aa7.95□□□□□ -1.14
NUP54-206ENST00000508465 CHIC2Q9UKJ5 165 aa7.95□□□□□ -1.14
NUP54-206ENST00000508465 PRR12Q9ULL5 1215 aa7.95□□□□□ -1.14
NUP54-206ENST00000508465 DCDC2BA2VCK2 349 aa7.94□□□□□ -1.14
NUP54-206ENST00000508465 CHRNA4P43681 627 aa7.94□□□□□ -1.14
NUP54-206ENST00000508465 SCNN1DP51172 638 aa7.94□□□□□ -1.14
NUP54-206ENST00000508465 SPDYE3A6NKU9 549 aa7.93□□□□□ -1.14
NUP54-206ENST00000508465 CDK2AP1O14519 115 aa7.93□□□□□ -1.14
NUP54-206ENST00000508465 CD33P20138 364 aa7.93□□□□□ -1.14
NUP54-206ENST00000508465 SEMA6BQ9H3T3 888 aa7.93□□□□□ -1.14
NUP54-206ENST00000508465 ZDHHC3Q9NYG2 299 aa7.93□□□□□ -1.14
NUP54-206ENST00000508465 ZNF608Q9ULD9 1512 aaPredicted RBP7.93□□□□□ -1.14
NUP54-206ENST00000508465 ALAS2P22557 587 aa7.92□□□□□ -1.14
NUP54-206ENST00000508465 GATA4P43694 442 aa7.92□□□□□ -1.14
NUP54-206ENST00000508465 BRPF1P55201 1214 aaPredicted RBP7.92□□□□□ -1.14
NUP54-206ENST00000508465 FCHSD1Q86WN1 690 aa7.92□□□□□ -1.14
NUP54-206ENST00000508465 CABP1Q9NZU7 370 aa7.92□□□□□ -1.14
NUP54-206ENST00000508465 SERTAD1Q9UHV2 236 aa7.92□□□□□ -1.14
NUP54-206ENST00000508465 KLF15Q9UIH9 416 aa7.92□□□□□ -1.14
NUP54-206ENST00000508465 PRDM2Q13029 1718 aa7.92□□□□□ -1.14
NUP54-206ENST00000508465 A6NJY4 79 aa7.91□□□□□ -1.14
NUP54-206ENST00000508465 FAM157BP0CG42 384 aa7.91□□□□□ -1.14
NUP54-206ENST00000508465 SPATA31C1P0DKV0 1188 aa7.91□□□□□ -1.14
NUP54-206ENST00000508465 VAC14Q08AM6 782 aa7.91□□□□□ -1.14
NUP54-206ENST00000508465 SEMA3FQ13275 785 aa7.91□□□□□ -1.14
NUP54-206ENST00000508465 IRF5Q13568 498 aa7.91□□□□□ -1.14
NUP54-206ENST00000508465 DOC2BQ14184 412 aa7.91□□□□□ -1.14
NUP54-206ENST00000508465 WASHC4Q2M389 1173 aa7.91□□□□□ -1.14
NUP54-206ENST00000508465 ZNF468Q5VIY5 522 aaPredicted RBP7.91□□□□□ -1.14
NUP54-206ENST00000508465 BICDL1Q6ZP65 573 aa7.91□□□□□ -1.14
NUP54-206ENST00000508465 PLPP7Q8NBV4 271 aa7.91□□□□□ -1.14
NUP54-206ENST00000508465 SLC4A9Q96Q91 983 aa7.91□□□□□ -1.14
NUP54-206ENST00000508465 ZIC5Q96T25 663 aa7.91□□□□□ -1.14
NUP54-206ENST00000508465 PLVAPQ9BX97 442 aa7.91□□□□□ -1.14
NUP54-206ENST00000508465 MARK1Q9P0L2 795 aa7.91□□□□□ -1.14
NUP54-206ENST00000508465 ABCC8Q09428 1581 aa7.9□□□□□ -1.14
NUP54-206ENST00000508465 AQRO60306 1485 aaKnown RBP eCLIP7.9□□□□□ -1.14
NUP54-206ENST00000508465 RAD54L2Q9Y4B4 1467 aa7.9□□□□□ -1.14
NUP54-206ENST00000508465 SOGA1O94964 1423 aa7.9□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms