RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 NIFKQ9BYG3 293 aaKnown RBP7.13□□□□□ -1.27
HMGB1P28-201ENST00000507778 GRIP2Q9C0E4 1043 aa7.13□□□□□ -1.27
HMGB1P28-201ENST00000507778 POLMQ9NP87 494 aaPredicted RBP7.13□□□□□ -1.27
HMGB1P28-201ENST00000507778 CABP1Q9NZU7 370 aa7.13□□□□□ -1.27
HMGB1P28-201ENST00000507778 DGAT1O75907 488 aa7.12□□□□□ -1.27
HMGB1P28-201ENST00000507778 NOS2P35228 1153 aa7.12□□□□□ -1.27
HMGB1P28-201ENST00000507778 ZNF211Q13398 564 aaPredicted RBP7.12□□□□□ -1.27
HMGB1P28-201ENST00000507778 GNASQ5JWF2 1037 aa7.12□□□□□ -1.27
HMGB1P28-201ENST00000507778 ANO2Q9NQ90 1003 aa7.12□□□□□ -1.27
HMGB1P28-201ENST00000507778 ZNF232Q9UNY5 417 aa7.12□□□□□ -1.27
HMGB1P28-201ENST00000507778 ICMTO60725 284 aa7.11□□□□□ -1.27
HMGB1P28-201ENST00000507778 CTSOP43234 321 aaPredicted RBP7.11□□□□□ -1.27
HMGB1P28-201ENST00000507778 FKBP4Q02790 459 aaKnown RBP eCLIP7.11□□□□□ -1.27
HMGB1P28-201ENST00000507778 SF3B2Q13435 895 aaKnown RBP7.11□□□□□ -1.27
HMGB1P28-201ENST00000507778 SCARF1Q14162 830 aa7.11□□□□□ -1.27
HMGB1P28-201ENST00000507778 PKDCCQ504Y2 493 aa7.11□□□□□ -1.27
HMGB1P28-201ENST00000507778 C6orf118Q5T5N4 469 aa7.11□□□□□ -1.27
HMGB1P28-201ENST00000507778 MRPL14Q6P1L8 145 aaKnown RBP7.11□□□□□ -1.27
HMGB1P28-201ENST00000507778 C16orf46Q6P387 395 aa7.11□□□□□ -1.27
HMGB1P28-201ENST00000507778 POTEAQ6S8J7 498 aa7.11□□□□□ -1.27
HMGB1P28-201ENST00000507778 ZNF295-AS1Q8N0V1 137 aa7.11□□□□□ -1.27
HMGB1P28-201ENST00000507778 RHBDD1Q8TEB9 315 aa7.11□□□□□ -1.27
HMGB1P28-201ENST00000507778 L3MBTL2Q969R5 705 aa7.11□□□□□ -1.27
HMGB1P28-201ENST00000507778 BIN2Q9UBW5 565 aaPredicted RBP7.11□□□□□ -1.27
HMGB1P28-201ENST00000507778 DNMT3AQ9Y6K1 912 aaPredicted RBP7.11□□□□□ -1.27
HMGB1P28-201ENST00000507778 H3BRB1 525 aa7.1□□□□□ -1.27
HMGB1P28-201ENST00000507778 EML1O00423 815 aa7.1□□□□□ -1.27
HMGB1P28-201ENST00000507778 HIRAP54198 1017 aaPredicted RBP7.1□□□□□ -1.27
HMGB1P28-201ENST00000507778 CTC1Q2NKJ3 1217 aa7.1□□□□□ -1.27
HMGB1P28-201ENST00000507778 GLYCTKQ8IVS8 523 aa7.1□□□□□ -1.27
HMGB1P28-201ENST00000507778 HELQQ8TDG4 1101 aa7.1□□□□□ -1.27
HMGB1P28-201ENST00000507778 ZDHHC1Q8WTX9 485 aa7.1□□□□□ -1.27
HMGB1P28-201ENST00000507778 TUT1Q9H6E5 874 aaKnown RBP7.1□□□□□ -1.27
HMGB1P28-201ENST00000507778 HCN4Q9Y3Q4 1203 aa7.1□□□□□ -1.27
HMGB1P28-201ENST00000507778 PARP3Q9Y6F1 533 aa7.1□□□□□ -1.27
HMGB1P28-201ENST00000507778 SMCPP49901 116 aaPredicted RBP7.09□□□□□ -1.27
HMGB1P28-201ENST00000507778 FOXD4L5Q5VV16 416 aaPredicted RBP7.09□□□□□ -1.27
HMGB1P28-201ENST00000507778 NGLY1Q96IV0 654 aa7.09□□□□□ -1.27
HMGB1P28-201ENST00000507778 SAP130Q9H0E3 1048 aa7.09□□□□□ -1.27
HMGB1P28-201ENST00000507778 MTMR3Q13615 1198 aa7.08□□□□□ -1.28
HMGB1P28-201ENST00000507778 C4orf17Q53FE4 359 aa7.08□□□□□ -1.28
HMGB1P28-201ENST00000507778 COX20Q5RI15 118 aa7.08□□□□□ -1.28
HMGB1P28-201ENST00000507778 SH3PXD2AQ5TCZ1 1133 aa7.08□□□□□ -1.28
HMGB1P28-201ENST00000507778 ALDH16A1Q8IZ83 802 aa7.08□□□□□ -1.28
HMGB1P28-201ENST00000507778 QTRT2Q9H974 415 aaKnown RBP7.08□□□□□ -1.28
HMGB1P28-201ENST00000507778 TTLL8A6PVC2 850 aa7.07□□□□□ -1.28
HMGB1P28-201ENST00000507778 SPATA31C2B4DYI2 1134 aa7.07□□□□□ -1.28
HMGB1P28-201ENST00000507778 AXIN1O15169 862 aa7.07□□□□□ -1.28
HMGB1P28-201ENST00000507778 FAM13AO94988 1023 aa7.07□□□□□ -1.28
HMGB1P28-201ENST00000507778 BMP1P13497 986 aa7.07□□□□□ -1.28
HMGB1P28-201ENST00000507778 PLA2G4AP47712 749 aa7.07□□□□□ -1.28
HMGB1P28-201ENST00000507778 POU4F2Q12837 409 aa7.07□□□□□ -1.28
HMGB1P28-201ENST00000507778 C1orf53Q5VUE5 145 aa7.07□□□□□ -1.28
HMGB1P28-201ENST00000507778 LYSMD3Q7Z3D4 306 aa7.07□□□□□ -1.28
HMGB1P28-201ENST00000507778 PRICKLE2Q7Z3G6 844 aa7.07□□□□□ -1.28
HMGB1P28-201ENST00000507778 RNF217Q8TC41 542 aa7.07□□□□□ -1.28
HMGB1P28-201ENST00000507778 MYO19Q96H55 970 aa7.07□□□□□ -1.28
HMGB1P28-201ENST00000507778 NPR3P17342 541 aa7.06□□□□□ -1.28
HMGB1P28-201ENST00000507778 PHKA2P46019 1235 aa7.06□□□□□ -1.28
HMGB1P28-201ENST00000507778 RTN1Q16799 776 aa7.06□□□□□ -1.28
HMGB1P28-201ENST00000507778 NBPF10Q6P3W6 841 aaKnown RBP7.06□□□□□ -1.28
HMGB1P28-201ENST00000507778 TRIM46Q7Z4K8 759 aa7.06□□□□□ -1.28
HMGB1P28-201ENST00000507778 CRIPAKQ8N1N5 446 aa7.06□□□□□ -1.28
HMGB1P28-201ENST00000507778 RGS22Q8NE09 1264 aa7.06□□□□□ -1.28
HMGB1P28-201ENST00000507778 AIDAQ96BJ3 306 aa7.06□□□□□ -1.28
HMGB1P28-201ENST00000507778 PHACTR1Q9C0D0 580 aa7.06□□□□□ -1.28
HMGB1P28-201ENST00000507778 STIM2Q9P246 746 aa7.06□□□□□ -1.28
HMGB1P28-201ENST00000507778 MARSP56192 900 aaKnown RBP7.05□□□□□ -1.28
HMGB1P28-201ENST00000507778 ECM1Q16610 540 aa7.05□□□□□ -1.28
HMGB1P28-201ENST00000507778 NBPF1Q3BBV0 1214 aa7.05□□□□□ -1.28
HMGB1P28-201ENST00000507778 C11orf91Q3C1V1 193 aa7.05□□□□□ -1.28
HMGB1P28-201ENST00000507778 WDR44Q5JSH3 913 aa7.05□□□□□ -1.28
HMGB1P28-201ENST00000507778 LRFN2Q9ULH4 789 aa7.05□□□□□ -1.28
HMGB1P28-201ENST00000507778 SOS2Q07890 1332 aaPredicted RBP7.04□□□□□ -1.28
HMGB1P28-201ENST00000507778 FIGNL2A6NMB9 653 aa7.04□□□□□ -1.28
HMGB1P28-201ENST00000507778 TNFRSF10BO14763 440 aa7.04□□□□□ -1.28
HMGB1P28-201ENST00000507778 MPSTP25325 297 aa7.04□□□□□ -1.28
HMGB1P28-201ENST00000507778 BRD2P25440 801 aaKnown RBP7.04□□□□□ -1.28
HMGB1P28-201ENST00000507778 TXLNAP40222 546 aa7.04□□□□□ -1.28
HMGB1P28-201ENST00000507778 NOM1Q5C9Z4 860 aaKnown RBP7.04□□□□□ -1.28
HMGB1P28-201ENST00000507778 ZFP42Q96MM3 310 aa7.04□□□□□ -1.28
HMGB1P28-201ENST00000507778 ZDHHC3Q9NYG2 299 aa7.04□□□□□ -1.28
HMGB1P28-201ENST00000507778 RHOQP17081 205 aa7.03□□□□□ -1.28
HMGB1P28-201ENST00000507778 TATP17735 454 aaPredicted RBP7.03□□□□□ -1.28
HMGB1P28-201ENST00000507778 ARHGAP4P98171 946 aa7.03□□□□□ -1.28
HMGB1P28-201ENST00000507778 DGKZQ13574 1117 aa7.03□□□□□ -1.28
HMGB1P28-201ENST00000507778 ABTB2Q8N961 1025 aa7.03□□□□□ -1.28
HMGB1P28-201ENST00000507778 TIMMDC1Q9NPL8 285 aa7.03□□□□□ -1.28
HMGB1P28-201ENST00000507778 KLK14Q9P0G3 267 aa7.03□□□□□ -1.28
HMGB1P28-201ENST00000507778 EIF1AXP47813 144 aaKnown RBP7.02□□□□□ -1.29
HMGB1P28-201ENST00000507778 AAMPQ13685 434 aa7.02□□□□□ -1.29
HMGB1P28-201ENST00000507778 ZNF787Q6DD87 383 aa7.02□□□□□ -1.29
HMGB1P28-201ENST00000507778 ALKBH2Q6NS38 261 aa7.02□□□□□ -1.29
HMGB1P28-201ENST00000507778 RHPN1Q8TCX5 695 aa7.02□□□□□ -1.29
HMGB1P28-201ENST00000507778 IFT43Q96FT9 208 aa7.02□□□□□ -1.29
HMGB1P28-201ENST00000507778 AAASQ9NRG9 546 aa7.02□□□□□ -1.29
HMGB1P28-201ENST00000507778 DCTN4Q9UJW0 460 aa7.02□□□□□ -1.29
HMGB1P28-201ENST00000507778 A0A1B0GTH6 734 aa7.01□□□□□ -1.29
HMGB1P28-201ENST00000507778 ERCC3P19447 782 aa7.01□□□□□ -1.29
HMGB1P28-201ENST00000507778 MAPK1P28482 360 aa7.01□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 120.7 ms