RNA–Protein interactions for RNA: ENST00000503942.1

UBE3D-205, Transcript of ubiquitin protein ligase E3D, humanhuman

TSL 3

Gene UBE3D, Length 646 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3D-205ENST00000503942 PHTF2Q8N3S3 785 aa9.48□□□□□ -0.89
UBE3D-205ENST00000503942 AVENQ9NQS1 362 aaPredicted RBP9.48□□□□□ -0.89
UBE3D-205ENST00000503942 KLF15Q9UIH9 416 aa9.48□□□□□ -0.89
UBE3D-205ENST00000503942 KRTAP9-1A8MXZ3 250 aaPredicted RBP9.47□□□□□ -0.89
UBE3D-205ENST00000503942 ATXN7O15265 892 aaPredicted RBP9.47□□□□□ -0.89
UBE3D-205ENST00000503942 TSGA10IPQ3SY00 556 aa9.47□□□□□ -0.89
UBE3D-205ENST00000503942 FCHSD1Q86WN1 690 aa9.47□□□□□ -0.89
UBE3D-205ENST00000503942 IL27Q8NEV9 243 aa9.47□□□□□ -0.89
UBE3D-205ENST00000503942 KRTAP9-2Q9BYQ4 174 aa9.47□□□□□ -0.89
UBE3D-205ENST00000503942 SCNN1DP51172 638 aa9.46□□□□□ -0.9
UBE3D-205ENST00000503942 SEMA6BQ9H3T3 888 aa9.46□□□□□ -0.9
UBE3D-205ENST00000503942 SNRKQ9NRH2 765 aa9.46□□□□□ -0.9
UBE3D-205ENST00000503942 DCDC2BA2VCK2 349 aa9.45□□□□□ -0.9
UBE3D-205ENST00000503942 MAPTP10636 758 aaKnown RBP9.45□□□□□ -0.9
UBE3D-205ENST00000503942 CD33P20138 364 aa9.45□□□□□ -0.9
UBE3D-205ENST00000503942 TNP2Q05952 138 aa9.45□□□□□ -0.9
UBE3D-205ENST00000503942 DOC2BQ14184 412 aa9.45□□□□□ -0.9
UBE3D-205ENST00000503942 TRIM11Q96F44 468 aa9.45□□□□□ -0.9
UBE3D-205ENST00000503942 NIFKQ9BYG3 293 aaKnown RBP9.45□□□□□ -0.9
UBE3D-205ENST00000503942 INHAP05111 366 aa9.44□□□□□ -0.9
UBE3D-205ENST00000503942 TMEM132AQ24JP5 1023 aa9.44□□□□□ -0.9
UBE3D-205ENST00000503942 CHIC2Q9UKJ5 165 aa9.44□□□□□ -0.9
UBE3D-205ENST00000503942 A0A1W2PNR3 127 aa9.43□□□□□ -0.9
UBE3D-205ENST00000503942 SPATA31C1P0DKV0 1188 aa9.43□□□□□ -0.9
UBE3D-205ENST00000503942 GDF10P55107 478 aa9.43□□□□□ -0.9
UBE3D-205ENST00000503942 SLFNL1Q499Z3 407 aa9.43□□□□□ -0.9
UBE3D-205ENST00000503942 OXLD1Q5BKU9 147 aa9.43□□□□□ -0.9
UBE3D-205ENST00000503942 ZNF295-AS1Q8N0V1 137 aa9.43□□□□□ -0.9
UBE3D-205ENST00000503942 SIRT1Q96EB6 747 aa9.43□□□□□ -0.9
UBE3D-205ENST00000503942 KRTAP9-6A0A140TA67 174 aa9.42□□□□□ -0.9
UBE3D-205ENST00000503942 GATA4P43694 442 aa9.42□□□□□ -0.9
UBE3D-205ENST00000503942 EIF4G2P78344 907 aaKnown RBP eCLIP9.42□□□□□ -0.9
UBE3D-205ENST00000503942 ZMYM1Q5SVZ6 1142 aa9.42□□□□□ -0.9
UBE3D-205ENST00000503942 ZNF468Q5VIY5 522 aaPredicted RBP9.42□□□□□ -0.9
UBE3D-205ENST00000503942 AIDAQ96BJ3 306 aa9.42□□□□□ -0.9
UBE3D-205ENST00000503942 FAM157BP0CG42 384 aa9.41□□□□□ -0.9
UBE3D-205ENST00000503942 NBPF1Q3BBV0 1214 aa9.41□□□□□ -0.9
UBE3D-205ENST00000503942 PLVAPQ9BX97 442 aa9.41□□□□□ -0.9
UBE3D-205ENST00000503942 KHNYNO15037 678 aaKnown RBP9.4□□□□□ -0.9
UBE3D-205ENST00000503942 SMTNP53814 917 aa9.4□□□□□ -0.9
UBE3D-205ENST00000503942 ARSJQ5FYB0 599 aaPredicted RBP9.4□□□□□ -0.9
UBE3D-205ENST00000503942 TBC1D2BQ9UPU7 963 aa9.4□□□□□ -0.9
UBE3D-205ENST00000503942 PCBP4P57723 403 aaKnown RBP9.39□□□□□ -0.91
UBE3D-205ENST00000503942 ZDHHC3Q9NYG2 299 aa9.39□□□□□ -0.91
UBE3D-205ENST00000503942 TATP17735 454 aaPredicted RBP9.38□□□□□ -0.91
UBE3D-205ENST00000503942 SAMD5Q5TGI4 173 aa9.38□□□□□ -0.91
UBE3D-205ENST00000503942 IQSEC3Q9UPP2 1182 aaPredicted RBP9.38□□□□□ -0.91
UBE3D-205ENST00000503942 IRF5Q13568 498 aa9.37□□□□□ -0.91
UBE3D-205ENST00000503942 RSPO4Q2I0M5 234 aaPredicted RBP9.37□□□□□ -0.91
UBE3D-205ENST00000503942 ZIC5Q96T25 663 aa9.37□□□□□ -0.91
UBE3D-205ENST00000503942 PRR12Q9ULL5 1215 aa9.37□□□□□ -0.91
UBE3D-205ENST00000503942 EFSO43281 561 aa9.36□□□□□ -0.91
UBE3D-205ENST00000503942 MTFR1Q15390 333 aa9.36□□□□□ -0.91
UBE3D-205ENST00000503942 NKAPLQ5M9Q1 402 aa9.36□□□□□ -0.91
UBE3D-205ENST00000503942 SLC4A9Q96Q91 983 aa9.36□□□□□ -0.91
UBE3D-205ENST00000503942 MDFIQ99750 246 aa9.36□□□□□ -0.91
UBE3D-205ENST00000503942 ELOA3CA0A087WX78 387 aaPredicted RBP9.35□□□□□ -0.91
UBE3D-205ENST00000503942 SPDYE3A6NKU9 549 aa9.35□□□□□ -0.91
UBE3D-205ENST00000503942 ELOA3DA6NLF2 546 aaPredicted RBP9.35□□□□□ -0.91
UBE3D-205ENST00000503942 CDK2AP1O14519 115 aa9.35□□□□□ -0.91
UBE3D-205ENST00000503942 LAMC2Q13753 1193 aa9.35□□□□□ -0.91
UBE3D-205ENST00000503942 MAP7D1Q3KQU3 841 aa9.35□□□□□ -0.91
UBE3D-205ENST00000503942 ELOA3BQ3SY89 546 aa9.35□□□□□ -0.91
UBE3D-205ENST00000503942 FOXD4L6Q3SYB3 417 aaPredicted RBP9.35□□□□□ -0.91
UBE3D-205ENST00000503942 FOXD4L3Q6VB84 417 aaPredicted RBP9.35□□□□□ -0.91
UBE3D-205ENST00000503942 ELOA3Q8NG57 546 aa9.35□□□□□ -0.91
UBE3D-205ENST00000503942 STRN4Q9NRL3 753 aa9.35□□□□□ -0.91
UBE3D-205ENST00000503942 USP3Q9Y6I4 520 aa9.35□□□□□ -0.91
UBE3D-205ENST00000503942 MARK1Q9P0L2 795 aa9.34□□□□□ -0.91
UBE3D-205ENST00000503942 SERTAD1Q9UHV2 236 aa9.34□□□□□ -0.91
UBE3D-205ENST00000503942 GJA3Q9Y6H8 435 aa9.34□□□□□ -0.91
UBE3D-205ENST00000503942 A6NJY4 79 aa9.33□□□□□ -0.92
UBE3D-205ENST00000503942 TMEM229AB2RXF0 380 aa9.33□□□□□ -0.92
UBE3D-205ENST00000503942 PRRT3Q5FWE3 981 aa9.33□□□□□ -0.92
UBE3D-205ENST00000503942 TPSG1Q9NRR2 321 aa9.33□□□□□ -0.92
UBE3D-205ENST00000503942 PLPP7Q8NBV4 271 aa9.32□□□□□ -0.92
UBE3D-205ENST00000503942 PRM3Q9NNZ6 103 aa9.32□□□□□ -0.92
UBE3D-205ENST00000503942 SCO2A0A1W2PP80 73 aa9.31□□□□□ -0.92
UBE3D-205ENST00000503942 ALAS2P22557 587 aa9.31□□□□□ -0.92
UBE3D-205ENST00000503942 SYT9Q86SS6 491 aa9.31□□□□□ -0.92
UBE3D-205ENST00000503942 CABP1Q9NZU7 370 aa9.31□□□□□ -0.92
UBE3D-205ENST00000503942 DYRK3O43781 588 aa9.3□□□□□ -0.92
UBE3D-205ENST00000503942 VAC14Q08AM6 782 aa9.3□□□□□ -0.92
UBE3D-205ENST00000503942 GTF3C3Q9Y5Q9 886 aa9.3□□□□□ -0.92
UBE3D-205ENST00000503942 ADARB2-AS1A8MUL3 147 aa9.29□□□□□ -0.92
UBE3D-205ENST00000503942 SIN3BO75182 1162 aa9.29□□□□□ -0.92
UBE3D-205ENST00000503942 APBA3O96018 575 aa9.29□□□□□ -0.92
UBE3D-205ENST00000503942 COL9A3Q14050 684 aaPredicted RBP9.29□□□□□ -0.92
UBE3D-205ENST00000503942 BICDL1Q6ZP65 573 aa9.29□□□□□ -0.92
UBE3D-205ENST00000503942 PRDM6Q9NQX0 595 aa9.29□□□□□ -0.92
UBE3D-205ENST00000503942 KRTAP1-3Q8IUG1 177 aa9.28□□□□□ -0.92
UBE3D-205ENST00000503942 M0R082 166 aa9.27□□□□□ -0.93
UBE3D-205ENST00000503942 TXLNAP40222 546 aa9.27□□□□□ -0.93
UBE3D-205ENST00000503942 ZNF417Q8TAU3 575 aa9.27□□□□□ -0.93
UBE3D-205ENST00000503942 ZNF587Q96SQ5 575 aaPredicted RBP9.27□□□□□ -0.93
UBE3D-205ENST00000503942 PARP3Q9Y6F1 533 aa9.27□□□□□ -0.93
UBE3D-205ENST00000503942 ARTNQ5T4W7 220 aa9.26□□□□□ -0.93
UBE3D-205ENST00000503942 ZDHHC1Q8WTX9 485 aa9.26□□□□□ -0.93
UBE3D-205ENST00000503942 NACC1Q96RE7 527 aa9.26□□□□□ -0.93
UBE3D-205ENST00000503942 SCHIP1Q9P0W5 487 aaPredicted RBP9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms