RNA–Protein interactions for RNA: ENST00000498143.5

USP54-216, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 4,313 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-216ENST00000498143 REM2Q8IYK8 340 aaPredicted RBP6.38□□□□□ -1.39
USP54-216ENST00000498143 SLC10A4Q96EP9 437 aa6.38□□□□□ -1.39
USP54-216ENST00000498143 ZFP91Q96JP5 570 aaPredicted RBP6.38□□□□□ -1.39
USP54-216ENST00000498143 CABP1Q9NZU7 370 aa6.38□□□□□ -1.39
USP54-216ENST00000498143 ROBO1Q9Y6N7 1651 aa6.38□□□□□ -1.39
USP54-216ENST00000498143 GTPBP6O43824 516 aaPredicted RBP6.38□□□□□ -1.39
USP54-216ENST00000498143 CHRNA5P30532 468 aa6.38□□□□□ -1.39
USP54-216ENST00000498143 L1TD1Q5T7N2 865 aaKnown RBP6.38□□□□□ -1.39
USP54-216ENST00000498143 FANCIQ9NVI1 1328 aa6.38□□□□□ -1.39
USP54-216ENST00000498143 MAP7D2Q96T17 732 aa6.38□□□□□ -1.39
USP54-216ENST00000498143 CCDC7Q96M83 1385 aa6.37□□□□□ -1.39
USP54-216ENST00000498143 SSFA2P28290 1259 aa6.37□□□□□ -1.39
USP54-216ENST00000498143 TEFQ10587 303 aa6.37□□□□□ -1.39
USP54-216ENST00000498143 ZNF692Q9BU19 519 aaPredicted RBP6.37□□□□□ -1.39
USP54-216ENST00000498143 CARD10Q9BWT7 1032 aa6.37□□□□□ -1.39
USP54-216ENST00000498143 GPATCH8Q9UKJ3 1502 aaKnown RBP6.37□□□□□ -1.39
USP54-216ENST00000498143 PPP1R12BO60237 982 aaPredicted RBP6.37□□□□□ -1.39
USP54-216ENST00000498143 CHRM1P11229 460 aaPredicted RBP6.37□□□□□ -1.39
USP54-216ENST00000498143 NGEFQ8N5V2 710 aa6.37□□□□□ -1.39
USP54-216ENST00000498143 DCAF11Q8TEB1 546 aa6.37□□□□□ -1.39
USP54-216ENST00000498143 ZNF428Q96B54 188 aa6.37□□□□□ -1.39
USP54-216ENST00000498143 C1QTNF1Q9BXJ1 281 aa6.37□□□□□ -1.39
USP54-216ENST00000498143 MTIF3Q9H2K0 278 aaKnown RBP6.37□□□□□ -1.39
USP54-216ENST00000498143 GBA2Q9HCG7 927 aaPredicted RBP6.37□□□□□ -1.39
USP54-216ENST00000498143 SSH2Q76I76 1423 aa6.37□□□□□ -1.39
USP54-216ENST00000498143 KIAA1107Q9UPP5 1409 aa6.37□□□□□ -1.39
USP54-216ENST00000498143 NUP153P49790 1475 aaKnown RBP6.37□□□□□ -1.39
USP54-216ENST00000498143 AOC2O75106 756 aa6.37□□□□□ -1.39
USP54-216ENST00000498143 RTKN2Q8IZC4 609 aa6.37□□□□□ -1.39
USP54-216ENST00000498143 TMOD2Q9NZR1 351 aa6.37□□□□□ -1.39
USP54-216ENST00000498143 ONECUT3O60422 494 aaPredicted RBP6.36□□□□□ -1.39
USP54-216ENST00000498143 MNX1P50219 401 aaPredicted RBP6.36□□□□□ -1.39
USP54-216ENST00000498143 TNS3Q68CZ2 1445 aa6.36□□□□□ -1.39
USP54-216ENST00000498143 ALDH1B1P30837 517 aa6.36□□□□□ -1.39
USP54-216ENST00000498143 EIF5P55010 431 aaKnown RBP6.36□□□□□ -1.39
USP54-216ENST00000498143 DMWDQ09019 674 aa6.36□□□□□ -1.39
USP54-216ENST00000498143 FBXO46Q6PJ61 603 aaPredicted RBP6.36□□□□□ -1.39
USP54-216ENST00000498143 MTMR7Q9Y216 660 aa6.36□□□□□ -1.39
USP54-216ENST00000498143 HFM1A2PYH4 1435 aa6.36□□□□□ -1.39
USP54-216ENST00000498143 DCCP43146 1447 aa6.36□□□□□ -1.39
USP54-216ENST00000498143 GOLGA6L6A8MZA4 724 aa6.36□□□□□ -1.39
USP54-216ENST00000498143 GOLGA6L22H0YM25 854 aa6.36□□□□□ -1.39
USP54-216ENST00000498143 RGL2O15211 777 aa6.36□□□□□ -1.39
USP54-216ENST00000498143 MARCH10Q8NA82 808 aaPredicted RBP6.36□□□□□ -1.39
USP54-216ENST00000498143 ABCA9Q8IUA7 1624 aa6.36□□□□□ -1.39
USP54-216ENST00000498143 CCDC174Q6PII3 467 aa6.36□□□□□ -1.39
USP54-216ENST00000498143 PHF6Q8IWS0 365 aaKnown RBP eCLIP6.36□□□□□ -1.39
USP54-216ENST00000498143 NAIPQ13075 1403 aa6.35□□□□□ -1.39
USP54-216ENST00000498143 RGMBQ6NW40 437 aa6.35□□□□□ -1.39
USP54-216ENST00000498143 ERVK-7P63135 1459 aa6.35□□□□□ -1.39
USP54-216ENST00000498143 KIF23Q02241 960 aaPredicted RBP6.35□□□□□ -1.39
USP54-216ENST00000498143 GORABQ5T7V8 394 aa6.35□□□□□ -1.39
USP54-216ENST00000498143 TPTE2Q6XPS3 522 aa6.35□□□□□ -1.39
USP54-216ENST00000498143 TEX2Q8IWB9 1127 aa6.35□□□□□ -1.39
USP54-216ENST00000498143 DDX21Q9NR30 783 aaKnown RBP eCLIP6.35□□□□□ -1.39
USP54-216ENST00000498143 MAP3K1Q13233 1512 aa6.35□□□□□ -1.39
USP54-216ENST00000498143 NOS1P29475 1434 aa6.35□□□□□ -1.39
USP54-216ENST00000498143 RNF123Q5XPI4 1314 aa6.35□□□□□ -1.39
USP54-216ENST00000498143 SYCP2Q9BX26 1530 aa6.34□□□□□ -1.39
USP54-216ENST00000498143 FOSL2P15408 326 aa6.34□□□□□ -1.39
USP54-216ENST00000498143 NBPF20Q3BBV1 942 aa6.34□□□□□ -1.39
USP54-216ENST00000498143 DNAJC5GQ8N7S2 189 aa6.34□□□□□ -1.39
USP54-216ENST00000498143 MYOM3Q5VTT5 1437 aa6.34□□□□□ -1.39
USP54-216ENST00000498143 ZC3H4Q9UPT8 1303 aaKnown RBP6.34□□□□□ -1.39
USP54-216ENST00000498143 PRXQ9BXM0 1461 aa6.34□□□□□ -1.39
USP54-216ENST00000498143 KIAA0100Q14667 2235 aaKnown RBP6.34□□□□□ -1.39
USP54-216ENST00000498143 GOLGA6L3A6NEY3 463 aa6.34□□□□□ -1.39
USP54-216ENST00000498143 PLEKHO1Q53GL0 409 aaPredicted RBP6.34□□□□□ -1.39
USP54-216ENST00000498143 SAMD7Q7Z3H4 446 aa6.34□□□□□ -1.39
USP54-216ENST00000498143 USP48Q86UV5 1035 aa6.34□□□□□ -1.39
USP54-216ENST00000498143 TMEM87AQ8NBN3 555 aa6.34□□□□□ -1.39
USP54-216ENST00000498143 DDRGK1Q96HY6 314 aa6.34□□□□□ -1.39
USP54-216ENST00000498143 RNF208Q9H0X6 261 aa6.34□□□□□ -1.39
USP54-216ENST00000498143 PRDM5Q9NQX1 630 aaPredicted RBP6.34□□□□□ -1.39
USP54-216ENST00000498143 RBM27Q9P2N5 1060 aaKnown RBP6.34□□□□□ -1.39
USP54-216ENST00000498143 SAMD9Q5K651 1589 aa6.34□□□□□ -1.39
USP54-216ENST00000498143 ISY1Q9ULR0 285 aaKnown RBP6.34□□□□□ -1.39
USP54-216ENST00000498143 CAMSAP2Q08AD1 1489 aa6.34□□□□□ -1.39
USP54-216ENST00000498143 ZNF827Q17R98 1081 aa6.34□□□□□ -1.4
USP54-216ENST00000498143 TRIM34Q9BYJ4 488 aa6.34□□□□□ -1.4
USP54-216ENST00000498143 HPS5Q9UPZ3 1129 aa6.34□□□□□ -1.4
USP54-216ENST00000498143 ITSN2Q9NZM3 1697 aa6.33□□□□□ -1.4
USP54-216ENST00000498143 TECPR2O15040 1411 aa6.33□□□□□ -1.4
USP54-216ENST00000498143 STK25O00506 426 aa6.33□□□□□ -1.4
USP54-216ENST00000498143 RTF1Q92541 710 aaKnown RBP6.33□□□□□ -1.4
USP54-216ENST00000498143 BRPF3Q9ULD4 1205 aa6.33□□□□□ -1.4
USP54-216ENST00000498143 ZMYM4Q5VZL5 1548 aa6.33□□□□□ -1.4
USP54-216ENST00000498143 EVC2Q86UK5 1308 aa6.33□□□□□ -1.4
USP54-216ENST00000498143 NRDCO43847 1150 aa6.33□□□□□ -1.4
USP54-216ENST00000498143 SERPINB2P05120 415 aa6.33□□□□□ -1.4
USP54-216ENST00000498143 MTERF4Q7Z6M4 381 aaKnown RBP6.33□□□□□ -1.4
USP54-216ENST00000498143 GZF1Q9H116 711 aaPredicted RBP6.33□□□□□ -1.4
USP54-216ENST00000498143 VEZTQ9HBM0 779 aa6.33□□□□□ -1.4
USP54-216ENST00000498143 RBM28Q9NW13 759 aaKnown RBP6.33□□□□□ -1.4
USP54-216ENST00000498143 WDR17Q8IZU2 1322 aa6.33□□□□□ -1.4
USP54-216ENST00000498143 MED14O60244 1454 aa6.32□□□□□ -1.4
USP54-216ENST00000498143 LOC102724428A0A0B4J2F2 783 aa6.32□□□□□ -1.4
USP54-216ENST00000498143 ARID4AP29374 1257 aaPredicted RBP6.32□□□□□ -1.4
USP54-216ENST00000498143 SIK1P57059 783 aa6.32□□□□□ -1.4
USP54-216ENST00000498143 TAF1DQ9H5J8 278 aaPredicted RBP6.32□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms