RNA–Protein interactions for RNA: ENST00000496047.5

USP39-219, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 554 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-219ENST00000496047 TSPYL4Q9UJ04 414 aa8.73□□□□□ -1.01
USP39-219ENST00000496047 PTPRCP08575 1304 aa8.73□□□□□ -1.01
USP39-219ENST00000496047 TMEM94Q12767 1356 aa8.73□□□□□ -1.01
USP39-219ENST00000496047 PLEKHG2Q9H7P9 1386 aa8.73□□□□□ -1.01
USP39-219ENST00000496047 NHSL1Q5SYE7 1610 aa8.72□□□□□ -1.01
USP39-219ENST00000496047 TNS3Q68CZ2 1445 aa8.72□□□□□ -1.01
USP39-219ENST00000496047 LAMB4A4D0S4 1761 aa8.72□□□□□ -1.01
USP39-219ENST00000496047 COL18A1P39060 1754 aa8.72□□□□□ -1.01
USP39-219ENST00000496047 FAM205CA6NFA0 338 aa8.72□□□□□ -1.01
USP39-219ENST00000496047 EIF5BO60841 1220 aaKnown RBP8.72□□□□□ -1.01
USP39-219ENST00000496047 NBR1Q14596 966 aa8.72□□□□□ -1.01
USP39-219ENST00000496047 KRT28Q7Z3Y7 464 aa8.72□□□□□ -1.01
USP39-219ENST00000496047 MRPL50Q8N5N7 158 aaKnown RBP8.72□□□□□ -1.01
USP39-219ENST00000496047 EFCAB3Q8N7B9 438 aa8.72□□□□□ -1.01
USP39-219ENST00000496047 LTV1Q96GA3 475 aaPredicted RBP8.72□□□□□ -1.01
USP39-219ENST00000496047 THUMPD2Q9BTF0 503 aaKnown RBP8.72□□□□□ -1.01
USP39-219ENST00000496047 STK31Q9BXU1 1019 aa8.72□□□□□ -1.01
USP39-219ENST00000496047 WDR70Q9NW82 654 aa8.72□□□□□ -1.01
USP39-219ENST00000496047 DAXXQ9UER7 740 aaPredicted RBP8.72□□□□□ -1.01
USP39-219ENST00000496047 USP19O94966 1318 aa8.72□□□□□ -1.01
USP39-219ENST00000496047 CRB1P82279 1406 aa8.71□□□□□ -1.01
USP39-219ENST00000496047 PXDNLA1KZ92 1463 aa8.71□□□□□ -1.01
USP39-219ENST00000496047 FAM83GA6ND36 823 aa8.71□□□□□ -1.02
USP39-219ENST00000496047 CHL1O00533 1208 aa8.71□□□□□ -1.02
USP39-219ENST00000496047 RLBP1P12271 317 aa8.71□□□□□ -1.02
USP39-219ENST00000496047 HDAC1Q13547 482 aaPredicted RBP8.71□□□□□ -1.02
USP39-219ENST00000496047 MTHFSDQ2M296 383 aaKnown RBP8.71□□□□□ -1.02
USP39-219ENST00000496047 AMOTQ4VCS5 1084 aa8.71□□□□□ -1.02
USP39-219ENST00000496047 PLEKHO1Q53GL0 409 aaPredicted RBP8.71□□□□□ -1.02
USP39-219ENST00000496047 C1orf141Q5JVX7 400 aa8.71□□□□□ -1.02
USP39-219ENST00000496047 MCM10Q7L590 875 aa8.71□□□□□ -1.02
USP39-219ENST00000496047 TMEM57Q8N5G2 664 aa8.71□□□□□ -1.02
USP39-219ENST00000496047 MFRPQ9BY79 579 aa8.71□□□□□ -1.02
USP39-219ENST00000496047 ABCC4O15439 1325 aa8.71□□□□□ -1.02
USP39-219ENST00000496047 ADAMTS7Q9UKP4 1686 aa8.71□□□□□ -1.02
USP39-219ENST00000496047 AFDNP55196 1824 aaKnown RBP8.7□□□□□ -1.02
USP39-219ENST00000496047 FOXO3O43524 673 aa8.7□□□□□ -1.02
USP39-219ENST00000496047 DCTN1Q14203 1278 aa8.7□□□□□ -1.02
USP39-219ENST00000496047 IPO9Q96P70 1041 aaKnown RBP8.7□□□□□ -1.02
USP39-219ENST00000496047 HS3ST6Q96QI5 342 aa8.7□□□□□ -1.02
USP39-219ENST00000496047 ELL2O00472 640 aaPredicted RBP8.69□□□□□ -1.02
USP39-219ENST00000496047 GCP02774 474 aa8.69□□□□□ -1.02
USP39-219ENST00000496047 CCDC30Q5VVM6 783 aa8.69□□□□□ -1.02
USP39-219ENST00000496047 NPM2Q86SE8 214 aaKnown RBP8.69□□□□□ -1.02
USP39-219ENST00000496047 GCC1Q96CN9 775 aa8.69□□□□□ -1.02
USP39-219ENST00000496047 RBM33Q96EV2 1170 aaKnown RBP8.69□□□□□ -1.02
USP39-219ENST00000496047 ORAI2Q96SN7 254 aa8.69□□□□□ -1.02
USP39-219ENST00000496047 NOP58Q9Y2X3 529 aaKnown RBP8.69□□□□□ -1.02
USP39-219ENST00000496047 IGHDP01880 384 aa8.68□□□□□ -1.02
USP39-219ENST00000496047 TEFQ10587 303 aa8.68□□□□□ -1.02
USP39-219ENST00000496047 AKAP4Q5JQC9 854 aa8.68□□□□□ -1.02
USP39-219ENST00000496047 C8orf58Q8NAV2 365 aa8.68□□□□□ -1.02
USP39-219ENST00000496047 PXDNQ92626 1479 aa8.68□□□□□ -1.02
USP39-219ENST00000496047 G3V3G9 751 aa8.67□□□□□ -1.02
USP39-219ENST00000496047 HOXB7P09629 217 aa8.67□□□□□ -1.02
USP39-219ENST00000496047 CCT4P50991 539 aaKnown RBP8.67□□□□□ -1.02
USP39-219ENST00000496047 TAF7Q15545 349 aaPredicted RBP8.67□□□□□ -1.02
USP39-219ENST00000496047 ZNF530Q6P9A1 599 aaPredicted RBP8.67□□□□□ -1.02
USP39-219ENST00000496047 ARHGEF25Q86VW2 580 aa8.67□□□□□ -1.02
USP39-219ENST00000496047 TSPYL6Q8N831 410 aa8.67□□□□□ -1.02
USP39-219ENST00000496047 ANKRD24Q8TF21 1146 aa8.67□□□□□ -1.02
USP39-219ENST00000496047 WNK3Q9BYP7 1800 aa8.67□□□□□ -1.02
USP39-219ENST00000496047 ZBTB40Q9NUA8 1239 aa8.67□□□□□ -1.02
USP39-219ENST00000496047 PDZRN3Q9UPQ7 1066 aa8.67□□□□□ -1.02
USP39-219ENST00000496047 TNNQ9UQP3 1299 aa8.67□□□□□ -1.02
USP39-219ENST00000496047 PCDHB15Q9Y5E8 787 aa8.67□□□□□ -1.02
USP39-219ENST00000496047 HMMRO75330 724 aa8.66□□□□□ -1.02
USP39-219ENST00000496047 XPCQ01831 940 aaPredicted RBP8.66□□□□□ -1.02
USP39-219ENST00000496047 RAPGEF4Q8WZA2 1011 aa8.66□□□□□ -1.02
USP39-219ENST00000496047 ANP32EQ9BTT0 268 aa8.66□□□□□ -1.02
USP39-219ENST00000496047 C5P01031 1676 aa8.65□□□□□ -1.02
USP39-219ENST00000496047 CEMIPQ8WUJ3 1361 aa8.65□□□□□ -1.02
USP39-219ENST00000496047 ERBB3P21860 1342 aa8.65□□□□□ -1.02
USP39-219ENST00000496047 POTEB3A0JP26 581 aa8.65□□□□□ -1.02
USP39-219ENST00000496047 CSB-PGBD3P0DP91 1061 aa8.65□□□□□ -1.02
USP39-219ENST00000496047 TATP17735 454 aaPredicted RBP8.65□□□□□ -1.02
USP39-219ENST00000496047 INTS3Q68E01 1043 aaKnown RBP8.65□□□□□ -1.02
USP39-219ENST00000496047 POTEBQ6S5H4 581 aa8.65□□□□□ -1.02
USP39-219ENST00000496047 SMC5Q8IY18 1101 aa8.65□□□□□ -1.02
USP39-219ENST00000496047 USHBP1Q8N6Y0 703 aa8.65□□□□□ -1.02
USP39-219ENST00000496047 KRTAP3-3Q9BYR6 98 aa8.65□□□□□ -1.02
USP39-219ENST00000496047 KRTAP3-2Q9BYR7 98 aa8.65□□□□□ -1.02
USP39-219ENST00000496047 KAT6BQ8WYB5 2073 aa8.65□□□□□ -1.03
USP39-219ENST00000496047 CPDO75976 1380 aa8.64□□□□□ -1.03
USP39-219ENST00000496047 HSP90AB1P08238 724 aaKnown RBP8.64□□□□□ -1.03
USP39-219ENST00000496047 BECN1Q14457 450 aa8.64□□□□□ -1.03
USP39-219ENST00000496047 C8orf34Q49A92 452 aa8.64□□□□□ -1.03
USP39-219ENST00000496047 RPAP2Q8IXW5 612 aaPredicted RBP8.64□□□□□ -1.03
USP39-219ENST00000496047 FBXO22Q8NEZ5 403 aa8.64□□□□□ -1.03
USP39-219ENST00000496047 SPG7Q9UQ90 795 aa8.64□□□□□ -1.03
USP39-219ENST00000496047 HDAC5Q9UQL6 1122 aa8.64□□□□□ -1.03
USP39-219ENST00000496047 TUBGCP6Q96RT7 1819 aa8.64□□□□□ -1.03
USP39-219ENST00000496047 COL14A1Q05707 1796 aaKnown RBP8.63□□□□□ -1.03
USP39-219ENST00000496047 PLCH1Q4KWH8 1693 aa8.63□□□□□ -1.03
USP39-219ENST00000496047 SPATA31A3Q5VYP0 1347 aa8.63□□□□□ -1.03
USP39-219ENST00000496047 ZBTB7BO15156 539 aaPredicted RBP8.63□□□□□ -1.03
USP39-219ENST00000496047 GNAI3P08754 354 aa8.63□□□□□ -1.03
USP39-219ENST00000496047 HDGFL1Q5TGJ6 251 aa8.63□□□□□ -1.03
USP39-219ENST00000496047 NBPF6Q5VWK0 638 aa8.63□□□□□ -1.03
USP39-219ENST00000496047 DPY19L2Q6NUT2 758 aa8.63□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms