RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 PTPRMP28827 1452 aa12.9□□□□□ -0.34
MSH5-SAPCD1-207ENST00000493662 WASHC4Q2M389 1173 aa12.9□□□□□ -0.34
MSH5-SAPCD1-207ENST00000493662 SNRKQ9NRH2 765 aa12.9□□□□□ -0.34
MSH5-SAPCD1-207ENST00000493662 CGNQ9P2M7 1197 aaKnown RBP12.9□□□□□ -0.34
MSH5-SAPCD1-207ENST00000493662 QRICH2Q9H0J4 1663 aa12.9□□□□□ -0.34
MSH5-SAPCD1-207ENST00000493662 ZNF335Q9H4Z2 1342 aaPredicted RBP12.9□□□□□ -0.34
MSH5-SAPCD1-207ENST00000493662 NLRP1Q9C000 1473 aa12.9□□□□□ -0.34
MSH5-SAPCD1-207ENST00000493662 MEX3CQ5U5Q3 659 aaKnown RBP12.9□□□□□ -0.34
MSH5-SAPCD1-207ENST00000493662 SMC5Q8IY18 1101 aa12.9□□□□□ -0.34
MSH5-SAPCD1-207ENST00000493662 MAP3K5Q99683 1374 aa12.9□□□□□ -0.34
MSH5-SAPCD1-207ENST00000493662 VPS37CA5D8V6 355 aaPredicted RBP12.89□□□□□ -0.35
MSH5-SAPCD1-207ENST00000493662 RNMTO43148 476 aaKnown RBP12.89□□□□□ -0.35
MSH5-SAPCD1-207ENST00000493662 ANKRD44Q8N8A2 993 aa12.89□□□□□ -0.35
MSH5-SAPCD1-207ENST00000493662 AKAP4Q5JQC9 854 aa12.89□□□□□ -0.35
MSH5-SAPCD1-207ENST00000493662 ZNF496Q96IT1 587 aaPredicted RBP12.89□□□□□ -0.35
MSH5-SAPCD1-207ENST00000493662 BTG4Q9NY30 223 aa12.89□□□□□ -0.35
MSH5-SAPCD1-207ENST00000493662 TMOD3Q9NYL9 352 aa12.89□□□□□ -0.35
MSH5-SAPCD1-207ENST00000493662 PIK3C2BO00750 1634 aa12.89□□□□□ -0.35
MSH5-SAPCD1-207ENST00000493662 USP16Q9Y5T5 823 aa12.89□□□□□ -0.35
MSH5-SAPCD1-207ENST00000493662 CCDC66A2RUB6 948 aa12.88□□□□□ -0.35
MSH5-SAPCD1-207ENST00000493662 A1BGP04217 495 aa12.88□□□□□ -0.35
MSH5-SAPCD1-207ENST00000493662 TBC1D32Q96NH3 1257 aa12.88□□□□□ -0.35
MSH5-SAPCD1-207ENST00000493662 MROH1Q8NDA8 1641 aa12.88□□□□□ -0.35
MSH5-SAPCD1-207ENST00000493662 ERC2O15083 957 aa12.88□□□□□ -0.35
MSH5-SAPCD1-207ENST00000493662 PDIA4P13667 645 aaKnown RBP12.88□□□□□ -0.35
MSH5-SAPCD1-207ENST00000493662 PTPRCP08575 1304 aa12.88□□□□□ -0.35
MSH5-SAPCD1-207ENST00000493662 GOLGA6L4A6NEF3 574 aa12.88□□□□□ -0.35
MSH5-SAPCD1-207ENST00000493662 SIRT2Q8IXJ6 389 aa12.88□□□□□ -0.35
MSH5-SAPCD1-207ENST00000493662 LAMC1P11047 1609 aa12.88□□□□□ -0.35
MSH5-SAPCD1-207ENST00000493662 PLEKHM2Q8IWE5 1019 aa12.88□□□□□ -0.35
MSH5-SAPCD1-207ENST00000493662 SMAP1Q8IYB5 467 aaPredicted RBP12.88□□□□□ -0.35
MSH5-SAPCD1-207ENST00000493662 DYNC1I1O14576 645 aa12.87□□□□□ -0.35
MSH5-SAPCD1-207ENST00000493662 SASS6Q6UVJ0 657 aa12.87□□□□□ -0.35
MSH5-SAPCD1-207ENST00000493662 ARHGAP45Q92619 1136 aa12.87□□□□□ -0.35
MSH5-SAPCD1-207ENST00000493662 SLAIN2Q9P270 581 aa12.87□□□□□ -0.35
MSH5-SAPCD1-207ENST00000493662 HDAC5Q9UQL6 1122 aa12.87□□□□□ -0.35
MSH5-SAPCD1-207ENST00000493662 GOLGA6L6A8MZA4 724 aa12.87□□□□□ -0.35
MSH5-SAPCD1-207ENST00000493662 ADGRB1O14514 1584 aa12.87□□□□□ -0.35
MSH5-SAPCD1-207ENST00000493662 ANKRD13DQ6ZTN6 518 aa12.87□□□□□ -0.35
MSH5-SAPCD1-207ENST00000493662 CNTROBQ8N137 903 aa12.87□□□□□ -0.35
MSH5-SAPCD1-207ENST00000493662 ZCRB1Q8TBF4 217 aaKnown RBP12.87□□□□□ -0.35
MSH5-SAPCD1-207ENST00000493662 OFD1O75665 1012 aa12.87□□□□□ -0.35
MSH5-SAPCD1-207ENST00000493662 PHF14O94880 888 aa12.87□□□□□ -0.35
MSH5-SAPCD1-207ENST00000493662 TBC1D2BQ9UPU7 963 aa12.87□□□□□ -0.35
MSH5-SAPCD1-207ENST00000493662 PDE1AP54750 535 aa12.86□□□□□ -0.35
MSH5-SAPCD1-207ENST00000493662 FAM182BQ5T319 152 aa12.86□□□□□ -0.35
MSH5-SAPCD1-207ENST00000493662 CPS1P31327 1500 aa12.86□□□□□ -0.35
MSH5-SAPCD1-207ENST00000493662 KCNQ4P56696 695 aa12.86□□□□□ -0.35
MSH5-SAPCD1-207ENST00000493662 FMNL2Q96PY5 1086 aa12.86□□□□□ -0.35
MSH5-SAPCD1-207ENST00000493662 CPA1P15085 419 aa12.86□□□□□ -0.35
MSH5-SAPCD1-207ENST00000493662 TTC22Q5TAA0 569 aa12.86□□□□□ -0.35
MSH5-SAPCD1-207ENST00000493662 RHPN1Q8TCX5 695 aa12.86□□□□□ -0.35
MSH5-SAPCD1-207ENST00000493662 LMTK2Q8IWU2 1503 aa12.85□□□□□ -0.35
MSH5-SAPCD1-207ENST00000493662 TULP1O00294 542 aaPredicted RBP12.85□□□□□ -0.35
MSH5-SAPCD1-207ENST00000493662 BMP2KLQ5H9B9 411 aa12.85□□□□□ -0.35
MSH5-SAPCD1-207ENST00000493662 TAF3Q5VWG9 929 aa12.85□□□□□ -0.35
MSH5-SAPCD1-207ENST00000493662 ZNF790Q6PG37 636 aa12.85□□□□□ -0.35
MSH5-SAPCD1-207ENST00000493662 ARHGEF40Q8TER5 1519 aa12.85□□□□□ -0.35
MSH5-SAPCD1-207ENST00000493662 DIP2BQ9P265 1576 aa12.85□□□□□ -0.35
MSH5-SAPCD1-207ENST00000493662 NUCB2P80303 420 aa12.85□□□□□ -0.35
MSH5-SAPCD1-207ENST00000493662 NGLY1Q96IV0 654 aa12.85□□□□□ -0.35
MSH5-SAPCD1-207ENST00000493662 BCL11BQ9C0K0 894 aaPredicted RBP12.85□□□□□ -0.35
MSH5-SAPCD1-207ENST00000493662 DCTPP1Q9H773 170 aa12.85□□□□□ -0.35
MSH5-SAPCD1-207ENST00000493662 ZKSCAN1P17029 563 aaPredicted RBP12.85□□□□□ -0.35
MSH5-SAPCD1-207ENST00000493662 PLCD3Q8N3E9 789 aa12.85□□□□□ -0.35
MSH5-SAPCD1-207ENST00000493662 MTMR7Q9Y216 660 aa12.85□□□□□ -0.35
MSH5-SAPCD1-207ENST00000493662 EIF4A1P60842 406 aaKnown RBP12.84□□□□□ -0.35
MSH5-SAPCD1-207ENST00000493662 HSP90AB4PQ58FF6 505 aa12.84□□□□□ -0.35
MSH5-SAPCD1-207ENST00000493662 LARP1Q6PKG0 1096 aaKnown RBP12.84□□□□□ -0.35
MSH5-SAPCD1-207ENST00000493662 FBXW7Q969H0 707 aa12.84□□□□□ -0.35
MSH5-SAPCD1-207ENST00000493662 KIF1BPQ96EK5 621 aa12.84□□□□□ -0.35
MSH5-SAPCD1-207ENST00000493662 GDPD2Q9HCC8 539 aa12.84□□□□□ -0.35
MSH5-SAPCD1-207ENST00000493662 CNNM1Q9NRU3 951 aa12.84□□□□□ -0.35
MSH5-SAPCD1-207ENST00000493662 PTPRUQ92729 1446 aa12.84□□□□□ -0.35
MSH5-SAPCD1-207ENST00000493662 HSP90AB3PQ58FF7 597 aa12.84□□□□□ -0.35
MSH5-SAPCD1-207ENST00000493662 PRPF40BQ6NWY9 871 aaKnown RBP12.84□□□□□ -0.35
MSH5-SAPCD1-207ENST00000493662 PDCL2Q8N4E4 241 aa12.84□□□□□ -0.35
MSH5-SAPCD1-207ENST00000493662 FAM135BQ49AJ0 1406 aa12.84□□□□□ -0.35
MSH5-SAPCD1-207ENST00000493662 PRPF40AO75400 957 aaKnown RBP12.84□□□□□ -0.35
MSH5-SAPCD1-207ENST00000493662 EDC3Q96F86 508 aaKnown RBP12.84□□□□□ -0.35
MSH5-SAPCD1-207ENST00000493662 PHF23Q9BUL5 403 aaPredicted RBP12.84□□□□□ -0.35
MSH5-SAPCD1-207ENST00000493662 KIF3AQ9Y496 699 aa12.84□□□□□ -0.35
MSH5-SAPCD1-207ENST00000493662 PIK3R4Q99570 1358 aa12.83□□□□□ -0.35
MSH5-SAPCD1-207ENST00000493662 K7ELQ4 463 aaPredicted RBP12.83□□□□□ -0.36
MSH5-SAPCD1-207ENST00000493662 LMBR1LQ6UX01 489 aa12.83□□□□□ -0.36
MSH5-SAPCD1-207ENST00000493662 KIF6Q6ZMV9 814 aa12.83□□□□□ -0.36
MSH5-SAPCD1-207ENST00000493662 AEBP2Q6ZN18 517 aaPredicted RBP12.83□□□□□ -0.36
MSH5-SAPCD1-207ENST00000493662 ARHGEF25Q86VW2 580 aa12.83□□□□□ -0.36
MSH5-SAPCD1-207ENST00000493662 CCDC24Q8N4L8 307 aa12.83□□□□□ -0.36
MSH5-SAPCD1-207ENST00000493662 C8orf37Q96NL8 207 aa12.83□□□□□ -0.36
MSH5-SAPCD1-207ENST00000493662 ADAMTS13Q76LX8 1427 aa12.83□□□□□ -0.36
MSH5-SAPCD1-207ENST00000493662 SNRPA1P09661 255 aaKnown RBP12.83□□□□□ -0.36
MSH5-SAPCD1-207ENST00000493662 SSFA2P28290 1259 aa12.83□□□□□ -0.36
MSH5-SAPCD1-207ENST00000493662 CEBPZQ03701 1054 aaKnown RBP12.83□□□□□ -0.36
MSH5-SAPCD1-207ENST00000493662 DDX46Q7L014 1031 aaKnown RBP12.83□□□□□ -0.36
MSH5-SAPCD1-207ENST00000493662 SIRT1Q96EB6 747 aa12.83□□□□□ -0.36
MSH5-SAPCD1-207ENST00000493662 USP44Q9H0E7 712 aa12.83□□□□□ -0.36
MSH5-SAPCD1-207ENST00000493662 IQSEC3Q9UPP2 1182 aaPredicted RBP12.83□□□□□ -0.36
MSH5-SAPCD1-207ENST00000493662 KIAA0232Q92628 1395 aa12.83□□□□□ -0.36
MSH5-SAPCD1-207ENST00000493662 CCDC57Q2TAC2 916 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms