RNA–Protein interactions for RNA: ENST00000493608.1

COL6A3-214, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 742 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-214ENST00000493608 FHDC1Q9C0D6 1143 aaPredicted RBP14.4□□□□□ -0.1
COL6A3-214ENST00000493608 KDRP35968 1356 aa14.39□□□□□ -0.11
COL6A3-214ENST00000493608 NPC1L1Q9UHC9 1359 aa14.39□□□□□ -0.11
COL6A3-214ENST00000493608 ERVV-2B6SEH9 535 aa14.39□□□□□ -0.11
COL6A3-214ENST00000493608 U2SURPO15042 1029 aaKnown RBP14.39□□□□□ -0.11
COL6A3-214ENST00000493608 HSP90AB1P08238 724 aaKnown RBP14.39□□□□□ -0.11
COL6A3-214ENST00000493608 SLC16A10Q8TF71 515 aa14.39□□□□□ -0.11
COL6A3-214ENST00000493608 ARXQ96QS3 562 aa14.39□□□□□ -0.11
COL6A3-214ENST00000493608 KDM6AO15550 1401 aaPredicted RBP14.39□□□□□ -0.11
COL6A3-214ENST00000493608 ATP6V1AP38606 617 aa14.38□□□□□ -0.11
COL6A3-214ENST00000493608 CABP4P57796 275 aa14.38□□□□□ -0.11
COL6A3-214ENST00000493608 ITPK1Q13572 414 aa14.38□□□□□ -0.11
COL6A3-214ENST00000493608 MSL1Q68DK7 614 aa14.38□□□□□ -0.11
COL6A3-214ENST00000493608 AMIGO3Q86WK7 504 aa14.38□□□□□ -0.11
COL6A3-214ENST00000493608 NFATC2IPQ8NCF5 419 aa14.38□□□□□ -0.11
COL6A3-214ENST00000493608 LINC00116Q8NCU8 138 aa14.38□□□□□ -0.11
COL6A3-214ENST00000493608 AK7Q96M32 723 aa14.38□□□□□ -0.11
COL6A3-214ENST00000493608 PHF14O94880 888 aa14.37□□□□□ -0.11
COL6A3-214ENST00000493608 MKRN3Q13064 507 aaKnown RBP14.37□□□□□ -0.11
COL6A3-214ENST00000493608 SYT17Q9BSW7 474 aa14.37□□□□□ -0.11
COL6A3-214ENST00000493608 LGR6Q9HBX8 967 aa14.37□□□□□ -0.11
COL6A3-214ENST00000493608 C4BP0C0L5 1744 aa14.37□□□□□ -0.11
COL6A3-214ENST00000493608 PLEKHG2Q9H7P9 1386 aa14.36□□□□□ -0.11
COL6A3-214ENST00000493608 POLD1P28340 1107 aa14.36□□□□□ -0.11
COL6A3-214ENST00000493608 RNF25Q96BH1 459 aaPredicted RBP14.36□□□□□ -0.11
COL6A3-214ENST00000493608 SLC4A9Q96Q91 983 aa14.36□□□□□ -0.11
COL6A3-214ENST00000493608 VIRMAQ69YN4 1812 aaKnown RBP14.36□□□□□ -0.11
COL6A3-214ENST00000493608 GOLGA2Q08379 1002 aa14.35□□□□□ -0.11
COL6A3-214ENST00000493608 MTHFSDQ2M296 383 aaKnown RBP14.35□□□□□ -0.11
COL6A3-214ENST00000493608 AKAP4Q5JQC9 854 aa14.35□□□□□ -0.11
COL6A3-214ENST00000493608 LCE2DQ5TA82 110 aaPredicted RBP14.35□□□□□ -0.11
COL6A3-214ENST00000493608 SCN11AQ9UI33 1791 aa14.34□□□□□ -0.11
COL6A3-214ENST00000493608 UBR3Q6ZT12 1888 aa14.34□□□□□ -0.11
COL6A3-214ENST00000493608 COL3A1P02461 1466 aaPredicted RBP14.34□□□□□ -0.11
COL6A3-214ENST00000493608 PTCD1O75127 700 aaKnown RBP14.34□□□□□ -0.11
COL6A3-214ENST00000493608 PPP2R1AP30153 589 aa14.34□□□□□ -0.11
COL6A3-214ENST00000493608 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP14.33□□□□□ -0.12
COL6A3-214ENST00000493608 FLAD1Q8NFF5 587 aa14.33□□□□□ -0.12
COL6A3-214ENST00000493608 COL24A1Q17RW2 1714 aa14.32□□□□□ -0.12
COL6A3-214ENST00000493608 GNPATO15228 680 aa14.32□□□□□ -0.12
COL6A3-214ENST00000493608 RNMTO43148 476 aaKnown RBP14.32□□□□□ -0.12
COL6A3-214ENST00000493608 HMGB2P26583 209 aaKnown RBP14.32□□□□□ -0.12
COL6A3-214ENST00000493608 CFAP53Q96M91 514 aa14.32□□□□□ -0.12
COL6A3-214ENST00000493608 SLC39A6Q13433 755 aa14.31□□□□□ -0.12
COL6A3-214ENST00000493608 PHACTR3Q96KR7 559 aa14.3□□□□□ -0.12
COL6A3-214ENST00000493608 SLC52A2Q9HAB3 445 aa14.3□□□□□ -0.12
COL6A3-214ENST00000493608 MYH14Q7Z406 1995 aaKnown RBP14.3□□□□□ -0.12
COL6A3-214ENST00000493608 SSFA2P28290 1259 aa14.29□□□□□ -0.12
COL6A3-214ENST00000493608 NLGN2Q8NFZ4 835 aa14.29□□□□□ -0.12
COL6A3-214ENST00000493608 RIOK3O14730 519 aaKnown RBP14.28□□□□□ -0.12
COL6A3-214ENST00000493608 U2AF1L5P0DN76 240 aaPredicted RBP14.28□□□□□ -0.12
COL6A3-214ENST00000493608 PRKAR2BP31323 418 aa14.28□□□□□ -0.12
COL6A3-214ENST00000493608 U2AF1Q01081 240 aaKnown RBP eCLIP14.28□□□□□ -0.12
COL6A3-214ENST00000493608 SLAIN1Q8ND83 568 aa14.28□□□□□ -0.12
COL6A3-214ENST00000493608 NUDCQ9Y266 331 aa14.28□□□□□ -0.12
COL6A3-214ENST00000493608 RTCBQ9Y3I0 505 aaKnown RBP14.28□□□□□ -0.12
COL6A3-214ENST00000493608 COL5A3P25940 1745 aaPredicted RBP14.27□□□□□ -0.12
COL6A3-214ENST00000493608 YY1P25490 414 aa14.27□□□□□ -0.13
COL6A3-214ENST00000493608 DDX10Q13206 875 aaKnown RBP14.27□□□□□ -0.13
COL6A3-214ENST00000493608 TRAPPC3LQ5T215 181 aa14.27□□□□□ -0.13
COL6A3-214ENST00000493608 IL17REQ8NFR9 667 aa14.27□□□□□ -0.13
COL6A3-214ENST00000493608 RSPH6AQ9H0K4 717 aa14.27□□□□□ -0.13
COL6A3-214ENST00000493608 MAP3K5Q99683 1374 aa14.26□□□□□ -0.13
COL6A3-214ENST00000493608 POTEMA6NI47 508 aa14.26□□□□□ -0.13
COL6A3-214ENST00000493608 GPR162Q16538 588 aa14.26□□□□□ -0.13
COL6A3-214ENST00000493608 RC3H1Q5TC82 1133 aaKnown RBP14.26□□□□□ -0.13
COL6A3-214ENST00000493608 DNAJC10Q8IXB1 793 aa14.26□□□□□ -0.13
COL6A3-214ENST00000493608 GAS2L2Q8NHY3 880 aa14.26□□□□□ -0.13
COL6A3-214ENST00000493608 ARHGEF1Q92888 912 aaKnown RBP14.26□□□□□ -0.13
COL6A3-214ENST00000493608 ZNF831Q5JPB2 1677 aa14.26□□□□□ -0.13
COL6A3-214ENST00000493608 UTRNP46939 3433 aa14.25□□□□□ -0.13
COL6A3-214ENST00000493608 GNAT3A8MTJ3 354 aa14.25□□□□□ -0.13
COL6A3-214ENST00000493608 RPS6KA4O75676 772 aa14.25□□□□□ -0.13
COL6A3-214ENST00000493608 CRKLP46109 303 aaKnown RBP14.25□□□□□ -0.13
COL6A3-214ENST00000493608 TJP1Q07157 1748 aa14.24□□□□□ -0.13
COL6A3-214ENST00000493608 CNTNAP4Q9C0A0 1308 aa14.24□□□□□ -0.13
COL6A3-214ENST00000493608 TEFQ10587 303 aa14.24□□□□□ -0.13
COL6A3-214ENST00000493608 POTEGQ6S5H5 508 aa14.24□□□□□ -0.13
COL6A3-214ENST00000493608 FAM163AQ96GL9 167 aaPredicted RBP14.24□□□□□ -0.13
COL6A3-214ENST00000493608 ADAMTS7Q9UKP4 1686 aa14.23□□□□□ -0.13
COL6A3-214ENST00000493608 RFC4P35249 363 aa14.23□□□□□ -0.13
COL6A3-214ENST00000493608 DPY19L2Q6NUT2 758 aa14.23□□□□□ -0.13
COL6A3-214ENST00000493608 MRC1P22897 1456 aa14.23□□□□□ -0.13
COL6A3-214ENST00000493608 FCHSD2O94868 740 aa14.22□□□□□ -0.13
COL6A3-214ENST00000493608 MMP10P09238 476 aa14.22□□□□□ -0.13
COL6A3-214ENST00000493608 INTS5Q6P9B9 1019 aaKnown RBP14.22□□□□□ -0.13
COL6A3-214ENST00000493608 L3MBTL3Q96JM7 780 aaPredicted RBP14.22□□□□□ -0.13
COL6A3-214ENST00000493608 SRP68Q9UHB9 627 aaKnown RBP14.22□□□□□ -0.13
COL6A3-214ENST00000493608 WWC3Q9ULE0 1092 aa14.22□□□□□ -0.13
COL6A3-214ENST00000493608 CHD4Q14839 1912 aa14.21□□□□□ -0.13
COL6A3-214ENST00000493608 GYS1P13807 737 aa14.21□□□□□ -0.13
COL6A3-214ENST00000493608 MCM10Q7L590 875 aa14.21□□□□□ -0.13
COL6A3-214ENST00000493608 CD2APQ9Y5K6 639 aa14.21□□□□□ -0.13
COL6A3-214ENST00000493608 KCPQ6ZWJ8 1503 aa14.2□□□□□ -0.14
COL6A3-214ENST00000493608 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP14.2□□□□□ -0.14
COL6A3-214ENST00000493608 KCNQ3O43525 872 aa14.2□□□□□ -0.14
COL6A3-214ENST00000493608 CYP19A1P11511 503 aaPredicted RBP14.2□□□□□ -0.14
COL6A3-214ENST00000493608 YBX3P16989 372 aaKnown RBP eCLIP14.2□□□□□ -0.14
COL6A3-214ENST00000493608 DCTN1Q14203 1278 aa14.2□□□□□ -0.14
COL6A3-214ENST00000493608 TTC5Q8N0Z6 440 aa14.2□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms