RNA–Protein interactions for RNA: ENST00000492859.5

BRCA1-220, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-220ENST00000492859 NAT1P18440 290 aa5.2□□□□□ -1.58
BRCA1-220ENST00000492859 SYCP2LQ5T4T6 812 aa5.2□□□□□ -1.58
BRCA1-220ENST00000492859 TAF3Q5VWG9 929 aa5.2□□□□□ -1.58
BRCA1-220ENST00000492859 PDZRN4Q6ZMN7 1036 aaPredicted RBP5.2□□□□□ -1.58
BRCA1-220ENST00000492859 SKAP1Q86WV1 359 aa5.2□□□□□ -1.58
BRCA1-220ENST00000492859 RAVER1Q8IY67 606 aaKnown RBP5.2□□□□□ -1.58
BRCA1-220ENST00000492859 OGFOD1Q8N543 542 aa5.2□□□□□ -1.58
BRCA1-220ENST00000492859 PPM1EQ8WY54 764 aa5.2□□□□□ -1.58
BRCA1-220ENST00000492859 JPH4Q96JJ6 628 aa5.2□□□□□ -1.58
BRCA1-220ENST00000492859 CEP89Q96ST8 783 aa5.2□□□□□ -1.58
BRCA1-220ENST00000492859 APBA2Q99767 749 aa5.2□□□□□ -1.58
BRCA1-220ENST00000492859 OSBPL2Q9H1P3 480 aa5.2□□□□□ -1.58
BRCA1-220ENST00000492859 BCL2L12Q9HB09 334 aa5.2□□□□□ -1.58
BRCA1-220ENST00000492859 POLR3EQ9NVU0 708 aa5.2□□□□□ -1.58
BRCA1-220ENST00000492859 ATP1B4Q9UN42 357 aaPredicted RBP5.2□□□□□ -1.58
BRCA1-220ENST00000492859 TMEM238LA0A1B0GVL6 79 aa5.19□□□□□ -1.58
BRCA1-220ENST00000492859 PSDA5PKW4 1024 aaPredicted RBP5.19□□□□□ -1.58
BRCA1-220ENST00000492859 VGLL3A8MV65 326 aa5.19□□□□□ -1.58
BRCA1-220ENST00000492859 ATICP31939 592 aa5.19□□□□□ -1.58
BRCA1-220ENST00000492859 RFC5P40937 340 aa5.19□□□□□ -1.58
BRCA1-220ENST00000492859 SATB1Q01826 763 aa5.19□□□□□ -1.58
BRCA1-220ENST00000492859 NFE2L2Q16236 605 aa5.19□□□□□ -1.58
BRCA1-220ENST00000492859 CCDC93Q567U6 631 aa5.19□□□□□ -1.58
BRCA1-220ENST00000492859 CHPFQ8IZ52 775 aa5.19□□□□□ -1.58
BRCA1-220ENST00000492859 PAF1Q8N7H5 531 aa5.19□□□□□ -1.58
BRCA1-220ENST00000492859 RNF217Q8TC41 542 aa5.19□□□□□ -1.58
BRCA1-220ENST00000492859 ZDHHC16Q969W1 377 aa5.19□□□□□ -1.58
BRCA1-220ENST00000492859 CCDC47Q96A33 483 aaKnown RBP5.19□□□□□ -1.58
BRCA1-220ENST00000492859 AS3MTQ9HBK9 375 aa5.19□□□□□ -1.58
BRCA1-220ENST00000492859 CAPN10Q9HC96 672 aa5.19□□□□□ -1.58
BRCA1-220ENST00000492859 NLRP2Q9NX02 1062 aa5.19□□□□□ -1.58
BRCA1-220ENST00000492859 VPS9D1Q9Y2B5 631 aa5.19□□□□□ -1.58
BRCA1-220ENST00000492859 RBP3P10745 1247 aa5.18□□□□□ -1.58
BRCA1-220ENST00000492859 NAT2P11245 290 aa5.18□□□□□ -1.58
BRCA1-220ENST00000492859 CLK1P49759 484 aaKnown RBP5.18□□□□□ -1.58
BRCA1-220ENST00000492859 MRPL58Q14197 206 aaKnown RBP5.18□□□□□ -1.58
BRCA1-220ENST00000492859 VPS72Q15906 364 aa5.18□□□□□ -1.58
BRCA1-220ENST00000492859 PROX2Q3B8N5 592 aa5.18□□□□□ -1.58
BRCA1-220ENST00000492859 ZC3H12AQ5D1E8 599 aaKnown RBP5.18□□□□□ -1.58
BRCA1-220ENST00000492859 NYAP1Q6ZVC0 841 aa5.18□□□□□ -1.58
BRCA1-220ENST00000492859 CCDC89Q8N998 374 aa5.18□□□□□ -1.58
BRCA1-220ENST00000492859 ITFG2Q969R8 447 aa5.18□□□□□ -1.58
BRCA1-220ENST00000492859 RBM33Q96EV2 1170 aaKnown RBP5.18□□□□□ -1.58
BRCA1-220ENST00000492859 GMLQ99445 158 aa5.18□□□□□ -1.58
BRCA1-220ENST00000492859 RANBP17Q9H2T7 1088 aaKnown RBP5.18□□□□□ -1.58
BRCA1-220ENST00000492859 FAM13BQ9NYF5 915 aa5.18□□□□□ -1.58
BRCA1-220ENST00000492859 EID1Q9Y6B2 187 aa5.18□□□□□ -1.58
BRCA1-220ENST00000492859 TNFRSF10BO14763 440 aa5.17□□□□□ -1.58
BRCA1-220ENST00000492859 RNASEH2AO75792 299 aaKnown RBP5.17□□□□□ -1.58
BRCA1-220ENST00000492859 FECHP22830 423 aa5.17□□□□□ -1.58
BRCA1-220ENST00000492859 SERPINB4P48594 390 aa5.17□□□□□ -1.58
BRCA1-220ENST00000492859 CBLBQ13191 982 aa5.17□□□□□ -1.58
BRCA1-220ENST00000492859 DUSP27Q5VZP5 1158 aa5.17□□□□□ -1.58
BRCA1-220ENST00000492859 TTC30AQ86WT1 665 aa5.17□□□□□ -1.58
BRCA1-220ENST00000492859 ANKRD13BQ86YJ7 626 aa5.17□□□□□ -1.58
BRCA1-220ENST00000492859 SAMD3Q8N6K7 520 aa5.17□□□□□ -1.58
BRCA1-220ENST00000492859 KIAA1958Q8N8K9 716 aa5.17□□□□□ -1.58
BRCA1-220ENST00000492859 ACRBPQ8NEB7 543 aa5.17□□□□□ -1.58
BRCA1-220ENST00000492859 ERP27Q96DN0 273 aa5.17□□□□□ -1.58
BRCA1-220ENST00000492859 TYW1Q9NV66 732 aaKnown RBP5.17□□□□□ -1.58
BRCA1-220ENST00000492859 STK26Q9P289 416 aa5.17□□□□□ -1.58
BRCA1-220ENST00000492859 ODF2LQ9ULJ1 636 aa5.17□□□□□ -1.58
BRCA1-220ENST00000492859 UNC13AQ9UPW8 1703 aa5.17□□□□□ -1.58
BRCA1-220ENST00000492859 A6NJY4 79 aa5.16□□□□□ -1.58
BRCA1-220ENST00000492859 C11orf95C9JLR9 678 aaPredicted RBP5.16□□□□□ -1.58
BRCA1-220ENST00000492859 TBX3O15119 743 aa5.16□□□□□ -1.58
BRCA1-220ENST00000492859 LMNB1P20700 586 aa5.16□□□□□ -1.58
BRCA1-220ENST00000492859 DNAJA1P31689 397 aaKnown RBP5.16□□□□□ -1.58
BRCA1-220ENST00000492859 TNNT2P45379 298 aaPredicted RBP5.16□□□□□ -1.58
BRCA1-220ENST00000492859 CD151P48509 253 aa5.16□□□□□ -1.58
BRCA1-220ENST00000492859 TNNI2P48788 182 aa5.16□□□□□ -1.58
BRCA1-220ENST00000492859 WASHC5Q12768 1159 aa5.16□□□□□ -1.58
BRCA1-220ENST00000492859 RAPGEF1Q13905 1077 aa5.16□□□□□ -1.58
BRCA1-220ENST00000492859 C10orf62Q5T681 223 aaPredicted RBP5.16□□□□□ -1.58
BRCA1-220ENST00000492859 CCDC70Q6NSX1 233 aa5.16□□□□□ -1.58
BRCA1-220ENST00000492859 PDXDC1Q6P996 788 aa5.16□□□□□ -1.58
BRCA1-220ENST00000492859 WDR75Q8IWA0 830 aaKnown RBP5.16□□□□□ -1.58
BRCA1-220ENST00000492859 SUGP1Q8IWZ8 645 aaKnown RBP5.16□□□□□ -1.58
BRCA1-220ENST00000492859 LMNTD2Q8IXW0 634 aa5.16□□□□□ -1.58
BRCA1-220ENST00000492859 GOLGA1Q92805 767 aa5.16□□□□□ -1.58
BRCA1-220ENST00000492859 ZBED2Q9BTP6 218 aa5.16□□□□□ -1.58
BRCA1-220ENST00000492859 RBM28Q9NW13 759 aaKnown RBP5.16□□□□□ -1.58
BRCA1-220ENST00000492859 BIN2Q9UBW5 565 aaPredicted RBP5.16□□□□□ -1.58
BRCA1-220ENST00000492859 ACAD8Q9UKU7 415 aa5.16□□□□□ -1.58
BRCA1-220ENST00000492859 ENPP3O14638 875 aa5.16□□□□□ -1.58
BRCA1-220ENST00000492859 COQ9O75208 318 aa5.16□□□□□ -1.58
BRCA1-220ENST00000492859 BPNT1O95861 308 aa5.16□□□□□ -1.58
BRCA1-220ENST00000492859 KCNA2P16389 499 aa5.16□□□□□ -1.58
BRCA1-220ENST00000492859 PTPREP23469 700 aa5.16□□□□□ -1.58
BRCA1-220ENST00000492859 EIF5P55010 431 aaKnown RBP5.16□□□□□ -1.58
BRCA1-220ENST00000492859 IFT88Q13099 833 aa5.16□□□□□ -1.58
BRCA1-220ENST00000492859 TMEM95Q3KNT9 176 aa5.16□□□□□ -1.58
BRCA1-220ENST00000492859 TMEM164Q5U3C3 297 aa5.16□□□□□ -1.58
BRCA1-220ENST00000492859 MSL1Q68DK7 614 aa5.16□□□□□ -1.58
BRCA1-220ENST00000492859 USP48Q86UV5 1035 aa5.16□□□□□ -1.58
BRCA1-220ENST00000492859 RELL1Q8IUW5 271 aa5.16□□□□□ -1.58
BRCA1-220ENST00000492859 CHCHD4Q8N4Q1 142 aa5.16□□□□□ -1.58
BRCA1-220ENST00000492859 PRPF38AQ8NAV1 312 aaKnown RBP5.16□□□□□ -1.58
BRCA1-220ENST00000492859 FRS2Q8WU20 508 aa5.16□□□□□ -1.58
BRCA1-220ENST00000492859 CFAP53Q96M91 514 aa5.16□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms