RNA–Protein interactions for RNA: ENST00000491429.1

SCN1A-206, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 542 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-206ENST00000491429 GDPD2Q9HCC8 539 aa10.39□□□□□ -0.75
SCN1A-206ENST00000491429 SERTAD1Q9UHV2 236 aa10.39□□□□□ -0.75
SCN1A-206ENST00000491429 DCDC2BA2VCK2 349 aa10.38□□□□□ -0.75
SCN1A-206ENST00000491429 GNB5O14775 395 aa10.38□□□□□ -0.75
SCN1A-206ENST00000491429 ATXN7O15265 892 aaPredicted RBP10.38□□□□□ -0.75
SCN1A-206ENST00000491429 DGKGP49619 791 aa10.38□□□□□ -0.75
SCN1A-206ENST00000491429 NLRP8Q86W28 1048 aa10.38□□□□□ -0.75
SCN1A-206ENST00000491429 PLPP7Q8NBV4 271 aa10.38□□□□□ -0.75
SCN1A-206ENST00000491429 C1orf216Q8TAB5 229 aa10.38□□□□□ -0.75
SCN1A-206ENST00000491429 CD33P20138 364 aa10.37□□□□□ -0.75
SCN1A-206ENST00000491429 ZNF295-AS1Q8N0V1 137 aa10.37□□□□□ -0.75
SCN1A-206ENST00000491429 KLF15Q9UIH9 416 aa10.37□□□□□ -0.75
SCN1A-206ENST00000491429 USP3Q9Y6I4 520 aa10.37□□□□□ -0.75
SCN1A-206ENST00000491429 A0A1W2PNR3 127 aa10.36□□□□□ -0.75
SCN1A-206ENST00000491429 MAPTP10636 758 aaKnown RBP10.36□□□□□ -0.75
SCN1A-206ENST00000491429 ABL2P42684 1182 aa10.36□□□□□ -0.75
SCN1A-206ENST00000491429 C1QTNF9BB2RNN3 333 aa10.35□□□□□ -0.75
SCN1A-206ENST00000491429 TMEM229AB2RXF0 380 aa10.35□□□□□ -0.75
SCN1A-206ENST00000491429 TNP2Q05952 138 aa10.35□□□□□ -0.75
SCN1A-206ENST00000491429 MAP7D1Q3KQU3 841 aa10.35□□□□□ -0.75
SCN1A-206ENST00000491429 ARSJQ5FYB0 599 aaPredicted RBP10.35□□□□□ -0.75
SCN1A-206ENST00000491429 CHSY3Q70JA7 882 aa10.34□□□□□ -0.75
SCN1A-206ENST00000491429 CD163Q86VB7 1156 aa10.34□□□□□ -0.75
SCN1A-206ENST00000491429 IQSEC3Q9UPP2 1182 aaPredicted RBP10.34□□□□□ -0.75
SCN1A-206ENST00000491429 KHNYNO15037 678 aaKnown RBP10.33□□□□□ -0.76
SCN1A-206ENST00000491429 SLC24A1O60721 1099 aa10.33□□□□□ -0.76
SCN1A-206ENST00000491429 ADH6P28332 368 aa10.33□□□□□ -0.76
SCN1A-206ENST00000491429 NBPF1Q3BBV0 1214 aa10.33□□□□□ -0.76
SCN1A-206ENST00000491429 FCHSD1Q86WN1 690 aa10.33□□□□□ -0.76
SCN1A-206ENST00000491429 SLC4A9Q96Q91 983 aa10.33□□□□□ -0.76
SCN1A-206ENST00000491429 PIK3R2O00459 728 aa10.32□□□□□ -0.76
SCN1A-206ENST00000491429 CHRNA4P43681 627 aa10.32□□□□□ -0.76
SCN1A-206ENST00000491429 MTFR1Q15390 333 aa10.32□□□□□ -0.76
SCN1A-206ENST00000491429 ZIC5Q96T25 663 aa10.32□□□□□ -0.76
SCN1A-206ENST00000491429 A6NJY4 79 aa10.31□□□□□ -0.76
SCN1A-206ENST00000491429 PIK3CDO00329 1044 aa10.31□□□□□ -0.76
SCN1A-206ENST00000491429 CDK2AP1O14519 115 aa10.31□□□□□ -0.76
SCN1A-206ENST00000491429 FAM182BQ5T319 152 aa10.31□□□□□ -0.76
SCN1A-206ENST00000491429 PARP3Q9Y6F1 533 aa10.31□□□□□ -0.76
SCN1A-206ENST00000491429 TATP17735 454 aaPredicted RBP10.3□□□□□ -0.76
SCN1A-206ENST00000491429 PCBP4P57723 403 aaKnown RBP10.3□□□□□ -0.76
SCN1A-206ENST00000491429 SEMA3FQ13275 785 aa10.3□□□□□ -0.76
SCN1A-206ENST00000491429 WASHC4Q2M389 1173 aa10.3□□□□□ -0.76
SCN1A-206ENST00000491429 STRN4Q9NRL3 753 aa10.3□□□□□ -0.76
SCN1A-206ENST00000491429 NOP53Q9NZM5 478 aaKnown RBP10.3□□□□□ -0.76
SCN1A-206ENST00000491429 CABP1Q9NZU7 370 aa10.3□□□□□ -0.76
SCN1A-206ENST00000491429 ZDHHC3Q9NYG2 299 aa10.29□□□□□ -0.76
SCN1A-206ENST00000491429 PCDHGA11Q9Y5H2 935 aa10.29□□□□□ -0.76
SCN1A-206ENST00000491429 FAM157BP0CG42 384 aa10.28□□□□□ -0.76
SCN1A-206ENST00000491429 Q8N3U1 123 aa10.28□□□□□ -0.76
SCN1A-206ENST00000491429 AVENQ9NQS1 362 aaPredicted RBP10.28□□□□□ -0.76
SCN1A-206ENST00000491429 ZNF468Q5VIY5 522 aaPredicted RBP10.27□□□□□ -0.77
SCN1A-206ENST00000491429 TRIM11Q96F44 468 aa10.27□□□□□ -0.77
SCN1A-206ENST00000491429 GJA3Q9Y6H8 435 aa10.27□□□□□ -0.77
SCN1A-206ENST00000491429 TXLNAP40222 546 aa10.26□□□□□ -0.77
SCN1A-206ENST00000491429 PRR12Q9ULL5 1215 aa10.26□□□□□ -0.77
SCN1A-206ENST00000491429 BICDL1Q6ZP65 573 aa10.25□□□□□ -0.77
SCN1A-206ENST00000491429 ZDHHC1Q8WTX9 485 aa10.25□□□□□ -0.77
SCN1A-206ENST00000491429 EFSO43281 561 aa10.24□□□□□ -0.77
SCN1A-206ENST00000491429 ITGB7P26010 798 aa10.24□□□□□ -0.77
SCN1A-206ENST00000491429 SOX11P35716 441 aa10.24□□□□□ -0.77
SCN1A-206ENST00000491429 SAMD5Q5TGI4 173 aa10.24□□□□□ -0.77
SCN1A-206ENST00000491429 PLVAPQ9BX97 442 aa10.24□□□□□ -0.77
SCN1A-206ENST00000491429 MARK1Q9P0L2 795 aa10.24□□□□□ -0.77
SCN1A-206ENST00000491429 DOC2BQ14184 412 aa10.23□□□□□ -0.77
SCN1A-206ENST00000491429 MCM6Q14566 821 aa10.23□□□□□ -0.77
SCN1A-206ENST00000491429 TPRNQ4KMQ1 711 aa10.23□□□□□ -0.77
SCN1A-206ENST00000491429 SERBP1Q8NC51 408 aaKnown RBP eCLIP10.23□□□□□ -0.77
SCN1A-206ENST00000491429 SCHIP1Q9P0W5 487 aaPredicted RBP10.23□□□□□ -0.77
SCN1A-206ENST00000491429 SKIP12755 728 aa10.22□□□□□ -0.77
SCN1A-206ENST00000491429 GTF2IP78347 998 aa10.22□□□□□ -0.77
SCN1A-206ENST00000491429 EML3Q32P44 896 aa10.22□□□□□ -0.77
SCN1A-206ENST00000491429 ZNF358Q9NW07 568 aa10.22□□□□□ -0.77
SCN1A-206ENST00000491429 BACH1O14867 736 aa10.21□□□□□ -0.77
SCN1A-206ENST00000491429 L3MBTL2Q969R5 705 aa10.21□□□□□ -0.77
SCN1A-206ENST00000491429 NOD1Q9Y239 953 aa10.21□□□□□ -0.77
SCN1A-206ENST00000491429 PSME1Q06323 249 aa10.2□□□□□ -0.78
SCN1A-206ENST00000491429 LAMC2Q13753 1193 aa10.2□□□□□ -0.78
SCN1A-206ENST00000491429 TBCELQ5QJ74 424 aa10.2□□□□□ -0.78
SCN1A-206ENST00000491429 LRRC69Q6ZNQ3 347 aa10.2□□□□□ -0.78
SCN1A-206ENST00000491429 SYT9Q86SS6 491 aa10.2□□□□□ -0.78
SCN1A-206ENST00000491429 ELOA3CA0A087WX78 387 aaPredicted RBP10.19□□□□□ -0.78
SCN1A-206ENST00000491429 ELOA3DA6NLF2 546 aaPredicted RBP10.19□□□□□ -0.78
SCN1A-206ENST00000491429 NCOA4Q13772 614 aa10.19□□□□□ -0.78
SCN1A-206ENST00000491429 ELOA3BQ3SY89 546 aa10.19□□□□□ -0.78
SCN1A-206ENST00000491429 ELOA3Q8NG57 546 aa10.19□□□□□ -0.78
SCN1A-206ENST00000491429 MDFIQ99750 246 aa10.19□□□□□ -0.78
SCN1A-206ENST00000491429 SEMA6BQ9H3T3 888 aa10.19□□□□□ -0.78
SCN1A-206ENST00000491429 COG6Q9Y2V7 657 aa10.19□□□□□ -0.78
SCN1A-206ENST00000491429 EML1O00423 815 aa10.18□□□□□ -0.78
SCN1A-206ENST00000491429 SPATA31C1P0DKV0 1188 aa10.18□□□□□ -0.78
SCN1A-206ENST00000491429 NOS2P35228 1153 aa10.18□□□□□ -0.78
SCN1A-206ENST00000491429 EPHA4P54764 986 aa10.18□□□□□ -0.78
SCN1A-206ENST00000491429 TEAD4Q15561 434 aa10.18□□□□□ -0.78
SCN1A-206ENST00000491429 ALG2Q9H553 416 aa10.18□□□□□ -0.78
SCN1A-206ENST00000491429 GATA4P43694 442 aa10.17□□□□□ -0.78
SCN1A-206ENST00000491429 SH3PXD2AQ5TCZ1 1133 aa10.17□□□□□ -0.78
SCN1A-206ENST00000491429 SLC9A9Q8IVB4 645 aa10.17□□□□□ -0.78
SCN1A-206ENST00000491429 DEPDC4Q8N2C3 294 aa10.17□□□□□ -0.78
SCN1A-206ENST00000491429 C7orf43Q8WVR3 580 aa10.17□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms