RNA–Protein interactions for RNA: ENST00000491165.5

USF3-203, Transcript of upstream transcription factor family member 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USF3, Length 2,133 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-203ENST00000491165 FMNL2Q96PY5 1086 aa28.83■■■□□ 2.21
USF3-203ENST00000491165 CT47B1P0C2W7 299 aaPredicted RBP28.82■■■□□ 2.2
USF3-203ENST00000491165 SSH1Q8WYL5 1049 aa28.82■■■□□ 2.2
USF3-203ENST00000491165 TRIM37O94972 964 aa28.82■■■□□ 2.2
USF3-203ENST00000491165 C8orf34Q49A92 452 aa28.82■■■□□ 2.2
USF3-203ENST00000491165 PDE3AQ14432 1141 aa28.8■■■□□ 2.2
USF3-203ENST00000491165 USP16Q9Y5T5 823 aa28.8■■■□□ 2.2
USF3-203ENST00000491165 PALLDQ8WX93 1383 aa28.8■■■□□ 2.2
USF3-203ENST00000491165 LAMB4A4D0S4 1761 aa28.79■■■□□ 2.2
USF3-203ENST00000491165 RBM42Q9BTD8 480 aaKnown RBP28.79■■■□□ 2.2
USF3-203ENST00000491165 EIF2S2P20042 333 aaKnown RBP28.79■■■□□ 2.2
USF3-203ENST00000491165 BCL11BQ9C0K0 894 aaPredicted RBP28.78■■■□□ 2.2
USF3-203ENST00000491165 TJP1Q07157 1748 aa28.78■■■□□ 2.2
USF3-203ENST00000491165 SNRPA1P09661 255 aaKnown RBP28.77■■■□□ 2.2
USF3-203ENST00000491165 RGS3P49796 1198 aa28.76■■■□□ 2.2
USF3-203ENST00000491165 LY75O60449 1722 aa28.76■■■□□ 2.19
USF3-203ENST00000491165 HOXB7P09629 217 aa28.76■■■□□ 2.19
USF3-203ENST00000491165 HDGFL1Q5TGJ6 251 aa28.76■■■□□ 2.19
USF3-203ENST00000491165 SMC4Q9NTJ3 1288 aa28.75■■■□□ 2.19
USF3-203ENST00000491165 KCNQ4P56696 695 aa28.75■■■□□ 2.19
USF3-203ENST00000491165 CANXP27824 592 aaKnown RBP28.74■■■□□ 2.19
USF3-203ENST00000491165 TNS1Q9HBL0 1735 aaKnown RBP28.74■■■□□ 2.19
USF3-203ENST00000491165 LOC102724428A0A0B4J2F2 783 aa28.73■■■□□ 2.19
USF3-203ENST00000491165 SIK1P57059 783 aa28.73■■■□□ 2.19
USF3-203ENST00000491165 ALDH1L2Q3SY69 923 aa28.73■■■□□ 2.19
USF3-203ENST00000491165 DNAJC10Q8IXB1 793 aa28.73■■■□□ 2.19
USF3-203ENST00000491165 ZNF428Q96B54 188 aa28.73■■■□□ 2.19
USF3-203ENST00000491165 SOS1Q07889 1333 aaPredicted RBP28.72■■■□□ 2.19
USF3-203ENST00000491165 ANXA1P04083 346 aa28.72■■■□□ 2.19
USF3-203ENST00000491165 PIP4K2AP48426 406 aaPredicted RBP28.72■■■□□ 2.19
USF3-203ENST00000491165 MRPL50Q8N5N7 158 aaKnown RBP28.72■■■□□ 2.19
USF3-203ENST00000491165 CHPF2Q9P2E5 772 aa28.72■■■□□ 2.19
USF3-203ENST00000491165 PROSER3Q2NL68 480 aa28.71■■■□□ 2.19
USF3-203ENST00000491165 VSIG10Q8N0Z9 540 aa28.71■■■□□ 2.19
USF3-203ENST00000491165 DAXXQ9UER7 740 aaPredicted RBP28.71■■■□□ 2.19
USF3-203ENST00000491165 CICQ96RK0 1608 aaPredicted RBP28.7■■■□□ 2.18
USF3-203ENST00000491165 ITPK1Q13572 414 aa28.7■■■□□ 2.18
USF3-203ENST00000491165 CCDC30Q5VVM6 783 aa28.7■■■□□ 2.18
USF3-203ENST00000491165 SMARCC1Q92922 1105 aaPredicted RBP28.7■■■□□ 2.18
USF3-203ENST00000491165 CLUAP1Q96AJ1 413 aa28.7■■■□□ 2.18
USF3-203ENST00000491165 SLC4A2P04920 1241 aa28.69■■■□□ 2.18
USF3-203ENST00000491165 PDIA6Q15084 440 aa28.69■■■□□ 2.18
USF3-203ENST00000491165 CACNA1FO60840 1977 aa28.69■■■□□ 2.18
USF3-203ENST00000491165 COL5A3P25940 1745 aaPredicted RBP28.69■■■□□ 2.18
USF3-203ENST00000491165 ZNF831Q5JPB2 1677 aa28.69■■■□□ 2.18
USF3-203ENST00000491165 IGHDP01880 384 aa28.69■■■□□ 2.18
USF3-203ENST00000491165 ATP6V1AP38606 617 aa28.69■■■□□ 2.18
USF3-203ENST00000491165 G2E3Q7L622 706 aa28.69■■■□□ 2.18
USF3-203ENST00000491165 TNNQ9UQP3 1299 aa28.69■■■□□ 2.18
USF3-203ENST00000491165 MYH14Q7Z406 1995 aaKnown RBP28.67■■■□□ 2.18
USF3-203ENST00000491165 FRAT1Q92837 279 aaPredicted RBP28.67■■■□□ 2.18
USF3-203ENST00000491165 PANK1Q8TE04 598 aa28.67■■■□□ 2.18
USF3-203ENST00000491165 A1BGP04217 495 aa28.66■■■□□ 2.18
USF3-203ENST00000491165 COG6Q9Y2V7 657 aa28.66■■■□□ 2.18
USF3-203ENST00000491165 TAF1LQ8IZX4 1826 aa28.66■■■□□ 2.18
USF3-203ENST00000491165 BRPF1P55201 1214 aaPredicted RBP28.66■■■□□ 2.18
USF3-203ENST00000491165 PHAXQ9H814 394 aaKnown RBP28.66■■■□□ 2.18
USF3-203ENST00000491165 NOB1Q9ULX3 412 aaKnown RBP28.66■■■□□ 2.18
USF3-203ENST00000491165 NBPF26B4DH59 902 aa28.64■■■□□ 2.18
USF3-203ENST00000491165 CYP19A1P11511 503 aaPredicted RBP28.64■■■□□ 2.18
USF3-203ENST00000491165 NBPF14Q5TI25 921 aa28.64■■■□□ 2.18
USF3-203ENST00000491165 NBPF10Q6P3W6 841 aaKnown RBP28.64■■■□□ 2.18
USF3-203ENST00000491165 NBPF15Q8N660 670 aa28.64■■■□□ 2.18
USF3-203ENST00000491165 LRP10Q7Z4F1 713 aa28.64■■■□□ 2.18
USF3-203ENST00000491165 STK31Q9BXU1 1019 aa28.64■■■□□ 2.18
USF3-203ENST00000491165 LRRC4BQ9NT99 713 aa28.63■■■□□ 2.17
USF3-203ENST00000491165 MYL6BP14649 208 aa28.63■■■□□ 2.17
USF3-203ENST00000491165 AAMPQ13685 434 aa28.63■■■□□ 2.17
USF3-203ENST00000491165 DBF4Q9UBU7 674 aaPredicted RBP28.63■■■□□ 2.17
USF3-203ENST00000491165 SLC4A3P48751 1232 aa28.62■■■□□ 2.17
USF3-203ENST00000491165 APBA3O96018 575 aa28.61■■■□□ 2.17
USF3-203ENST00000491165 PROM2Q8N271 834 aa28.61■■■□□ 2.17
USF3-203ENST00000491165 LINC00116Q8NCU8 138 aa28.61■■■□□ 2.17
USF3-203ENST00000491165 DDX21Q9NR30 783 aaKnown RBP eCLIP28.61■■■□□ 2.17
USF3-203ENST00000491165 CCNL1Q9UK58 526 aaPredicted RBP28.61■■■□□ 2.17
USF3-203ENST00000491165 TRIM27P14373 513 aa28.6■■■□□ 2.17
USF3-203ENST00000491165 TEX13AQ9BXU3 409 aaPredicted RBP28.6■■■□□ 2.17
USF3-203ENST00000491165 KIF16BQ96L93 1317 aa28.59■■■□□ 2.17
USF3-203ENST00000491165 ZBTB1Q9Y2K1 713 aa28.59■■■□□ 2.17
USF3-203ENST00000491165 RREB1Q92766 1687 aa28.59■■■□□ 2.17
USF3-203ENST00000491165 STARD3NLO95772 234 aa28.58■■■□□ 2.17
USF3-203ENST00000491165 FLIIQ13045 1269 aa28.58■■■□□ 2.17
USF3-203ENST00000491165 RLBP1P12271 317 aa28.57■■■□□ 2.16
USF3-203ENST00000491165 CRKLP46109 303 aaKnown RBP28.57■■■□□ 2.16
USF3-203ENST00000491165 INTS5Q6P9B9 1019 aaKnown RBP28.57■■■□□ 2.16
USF3-203ENST00000491165 PLSCR1O15162 318 aa28.56■■■□□ 2.16
USF3-203ENST00000491165 ZKSCAN2Q63HK3 967 aa28.55■■■□□ 2.16
USF3-203ENST00000491165 ATF7IPQ6VMQ6 1270 aa28.55■■■□□ 2.16
USF3-203ENST00000491165 NFKBIBQ15653 356 aa28.55■■■□□ 2.16
USF3-203ENST00000491165 TXNRD1Q16881 649 aa28.54■■■□□ 2.16
USF3-203ENST00000491165 ERBB4Q15303 1308 aa28.54■■■□□ 2.16
USF3-203ENST00000491165 C4BP0C0L5 1744 aa28.54■■■□□ 2.16
USF3-203ENST00000491165 AIMP1Q12904 312 aaKnown RBP28.54■■■□□ 2.16
USF3-203ENST00000491165 CHMP4AQ9BY43 222 aa28.54■■■□□ 2.16
USF3-203ENST00000491165 HYPKQ9NX55 129 aa28.54■■■□□ 2.16
USF3-203ENST00000491165 RGPD3A6NKT7 1758 aaPredicted RBP28.54■■■□□ 2.16
USF3-203ENST00000491165 RGPD4Q7Z3J3 1758 aa28.54■■■□□ 2.16
USF3-203ENST00000491165 F6X3S4 739 aa28.53■■■□□ 2.16
USF3-203ENST00000491165 FKBP5Q13451 457 aaPredicted RBP28.52■■■□□ 2.16
USF3-203ENST00000491165 COPS6Q7L5N1 327 aa28.52■■■□□ 2.16
Retrieved 100 of 20,778 RNA–protein pairs in 1740.7 ms