RNA–Protein interactions for RNA: ENST00000490924.1

VPS41-214, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-214ENST00000490924 RNF17Q9BXT8 1623 aaKnown RBP7.73□□□□□ -1.17
VPS41-214ENST00000490924 UHRF1BP1LA0JNW5 1464 aa7.73□□□□□ -1.17
VPS41-214ENST00000490924 WDR7Q9Y4E6 1490 aa7.73□□□□□ -1.17
VPS41-214ENST00000490924 SCAPERQ9BY12 1400 aa7.72□□□□□ -1.17
VPS41-214ENST00000490924 FIGNL2A6NMB9 653 aa7.72□□□□□ -1.17
VPS41-214ENST00000490924 LILRB3O75022 631 aa7.72□□□□□ -1.17
VPS41-214ENST00000490924 KCNMA1Q12791 1236 aa7.72□□□□□ -1.17
VPS41-214ENST00000490924 C4orf48Q5BLP8 95 aa7.72□□□□□ -1.17
VPS41-214ENST00000490924 CNTNAP3BQ96NU0 1288 aa7.72□□□□□ -1.17
VPS41-214ENST00000490924 CNTNAP3Q9BZ76 1288 aa7.72□□□□□ -1.17
VPS41-214ENST00000490924 DNMT3LQ9UJW3 386 aa7.72□□□□□ -1.17
VPS41-214ENST00000490924 PLA2R1Q13018 1463 aa7.71□□□□□ -1.18
VPS41-214ENST00000490924 LORP23490 312 aaPredicted RBP7.71□□□□□ -1.18
VPS41-214ENST00000490924 ANP32AP39687 249 aaKnown RBP7.71□□□□□ -1.18
VPS41-214ENST00000490924 PDE4DQ08499 809 aa7.71□□□□□ -1.18
VPS41-214ENST00000490924 CDCA8Q53HL2 280 aa7.71□□□□□ -1.18
VPS41-214ENST00000490924 CCDC136Q96JN2 1154 aa7.71□□□□□ -1.18
VPS41-214ENST00000490924 USP35Q9P2H5 1018 aa7.71□□□□□ -1.18
VPS41-214ENST00000490924 LIMD1Q9UGP4 676 aa7.71□□□□□ -1.18
VPS41-214ENST00000490924 NOP58Q9Y2X3 529 aaKnown RBP7.71□□□□□ -1.18
VPS41-214ENST00000490924 CLASP1Q7Z460 1538 aa7.71□□□□□ -1.18
VPS41-214ENST00000490924 A2MP01023 1474 aa7.7□□□□□ -1.18
VPS41-214ENST00000490924 ABCC2Q92887 1545 aa7.7□□□□□ -1.18
VPS41-214ENST00000490924 ST20-MTHFSA0A0A6YYL1 179 aa7.7□□□□□ -1.18
VPS41-214ENST00000490924 CDC14CA4D256 554 aa7.7□□□□□ -1.18
VPS41-214ENST00000490924 GDF11O95390 407 aa7.7□□□□□ -1.18
VPS41-214ENST00000490924 RRP1P56182 461 aaKnown RBP7.7□□□□□ -1.18
VPS41-214ENST00000490924 MARSP56192 900 aaKnown RBP7.7□□□□□ -1.18
VPS41-214ENST00000490924 PTSQ03393 145 aa7.7□□□□□ -1.18
VPS41-214ENST00000490924 PTK2Q05397 1052 aa7.7□□□□□ -1.18
VPS41-214ENST00000490924 QPCTQ16769 361 aa7.7□□□□□ -1.18
VPS41-214ENST00000490924 PPP1R26Q5T8A7 1209 aaPredicted RBP7.7□□□□□ -1.18
VPS41-214ENST00000490924 PDXDC2PQ6P474 469 aa7.7□□□□□ -1.18
VPS41-214ENST00000490924 SH3BP5LQ7L8J4 393 aa7.7□□□□□ -1.18
VPS41-214ENST00000490924 SH3RF1Q7Z6J0 888 aa7.7□□□□□ -1.18
VPS41-214ENST00000490924 SVOPQ8N4V2 548 aa7.7□□□□□ -1.18
VPS41-214ENST00000490924 IPO9Q96P70 1041 aaKnown RBP7.7□□□□□ -1.18
VPS41-214ENST00000490924 PTPRTO14522 1441 aa7.69□□□□□ -1.18
VPS41-214ENST00000490924 CDC42BPBQ9Y5S2 1711 aa7.69□□□□□ -1.18
VPS41-214ENST00000490924 ERFEQ4G0M1 354 aa7.69□□□□□ -1.18
VPS41-214ENST00000490924 SV2AQ7L0J3 742 aa7.69□□□□□ -1.18
VPS41-214ENST00000490924 KCTD15Q96SI1 283 aaPredicted RBP7.69□□□□□ -1.18
VPS41-214ENST00000490924 POLMQ9NP87 494 aaPredicted RBP7.69□□□□□ -1.18
VPS41-214ENST00000490924 ZC3H4Q9UPT8 1303 aaKnown RBP7.69□□□□□ -1.18
VPS41-214ENST00000490924 PLCH2O75038 1416 aa7.69□□□□□ -1.18
VPS41-214ENST00000490924 TMF1P82094 1093 aa7.68□□□□□ -1.18
VPS41-214ENST00000490924 MAP3K10Q02779 954 aa7.68□□□□□ -1.18
VPS41-214ENST00000490924 NBPF20Q3BBV1 942 aa7.68□□□□□ -1.18
VPS41-214ENST00000490924 B4GALNT3Q6L9W6 998 aa7.68□□□□□ -1.18
VPS41-214ENST00000490924 KCTD17Q8N5Z5 321 aa7.68□□□□□ -1.18
VPS41-214ENST00000490924 TESK2Q96S53 571 aa7.68□□□□□ -1.18
VPS41-214ENST00000490924 BCL11AQ9H165 835 aa7.68□□□□□ -1.18
VPS41-214ENST00000490924 POLR3EQ9NVU0 708 aa7.68□□□□□ -1.18
VPS41-214ENST00000490924 RCAN3Q9UKA8 241 aa7.68□□□□□ -1.18
VPS41-214ENST00000490924 EIF3AQ14152 1382 aaKnown RBP7.68□□□□□ -1.18
VPS41-214ENST00000490924 PIK3C2GO75747 1445 aa7.68□□□□□ -1.18
VPS41-214ENST00000490924 TRPM2O94759 1503 aa7.68□□□□□ -1.18
VPS41-214ENST00000490924 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP7.68□□□□□ -1.18
VPS41-214ENST00000490924 SYNMO15061 1565 aa7.67□□□□□ -1.18
VPS41-214ENST00000490924 KIAA1210Q9ULL0 1709 aa7.67□□□□□ -1.18
VPS41-214ENST00000490924 SPINT1O43278 529 aa7.67□□□□□ -1.18
VPS41-214ENST00000490924 RTL5Q5HYW3 569 aaPredicted RBP7.67□□□□□ -1.18
VPS41-214ENST00000490924 CCDC155Q8N6L0 562 aa7.67□□□□□ -1.18
VPS41-214ENST00000490924 DCAF11Q8TEB1 546 aa7.67□□□□□ -1.18
VPS41-214ENST00000490924 COL25A1Q9BXS0 654 aaPredicted RBP7.67□□□□□ -1.18
VPS41-214ENST00000490924 FKBPLQ9UIM3 349 aa7.67□□□□□ -1.18
VPS41-214ENST00000490924 SYCP2Q9BX26 1530 aa7.67□□□□□ -1.18
VPS41-214ENST00000490924 IRX6P78412 446 aaPredicted RBP7.66□□□□□ -1.18
VPS41-214ENST00000490924 RASSF7Q02833 373 aa7.66□□□□□ -1.18
VPS41-214ENST00000490924 ZNF777Q9ULD5 760 aaPredicted RBP7.66□□□□□ -1.18
VPS41-214ENST00000490924 ADAMTS8Q9UP79 889 aa7.66□□□□□ -1.18
VPS41-214ENST00000490924 ZMYM3Q14202 1370 aa7.66□□□□□ -1.18
VPS41-214ENST00000490924 SBNO2Q9Y2G9 1366 aa7.66□□□□□ -1.18
VPS41-214ENST00000490924 ABCC1P33527 1531 aa7.66□□□□□ -1.18
VPS41-214ENST00000490924 ARHGAP5Q13017 1502 aa7.66□□□□□ -1.18
VPS41-214ENST00000490924 VWDEQ8N2E2 1590 aa7.66□□□□□ -1.18
VPS41-214ENST00000490924 DEPDC5O75140 1603 aa7.66□□□□□ -1.18
VPS41-214ENST00000490924 MYO5CQ9NQX4 1742 aa7.66□□□□□ -1.18
VPS41-214ENST00000490924 RELBQ01201 579 aa7.65□□□□□ -1.18
VPS41-214ENST00000490924 CBLBQ13191 982 aa7.65□□□□□ -1.18
VPS41-214ENST00000490924 AAMPQ13685 434 aa7.65□□□□□ -1.18
VPS41-214ENST00000490924 FOXR1Q6PIV2 292 aa7.65□□□□□ -1.18
VPS41-214ENST00000490924 NANOS1Q8WY41 292 aaKnown RBP7.65□□□□□ -1.18
VPS41-214ENST00000490924 SCARF2Q96GP6 870 aaPredicted RBP7.65□□□□□ -1.18
VPS41-214ENST00000490924 SCAF11Q99590 1463 aaKnown RBP7.65□□□□□ -1.18
VPS41-214ENST00000490924 ENAMQ9NRM1 1142 aa7.65□□□□□ -1.18
VPS41-214ENST00000490924 NINLQ9Y2I6 1382 aa7.65□□□□□ -1.18
VPS41-214ENST00000490924 IQGAP1P46940 1657 aa7.64□□□□□ -1.19
VPS41-214ENST00000490924 TTC37Q6PGP7 1564 aa7.64□□□□□ -1.19
VPS41-214ENST00000490924 MYOM2P54296 1465 aa7.64□□□□□ -1.19
VPS41-214ENST00000490924 Q6ZVU0 165 aa7.64□□□□□ -1.19
VPS41-214ENST00000490924 DZIP3Q86Y13 1208 aaKnown RBP7.64□□□□□ -1.19
VPS41-214ENST00000490924 VWA5B2Q8N398 1253 aa7.64□□□□□ -1.19
VPS41-214ENST00000490924 GPSM3Q9Y4H4 160 aa7.64□□□□□ -1.19
VPS41-214ENST00000490924 MADDQ8WXG6 1647 aa7.63□□□□□ -1.19
VPS41-214ENST00000490924 ZNF521Q96K83 1311 aa7.63□□□□□ -1.19
VPS41-214ENST00000490924 ARID3CA6NKF2 412 aa7.63□□□□□ -1.19
VPS41-214ENST00000490924 ITGA6P23229 1130 aa7.63□□□□□ -1.19
VPS41-214ENST00000490924 HNRNPMP52272 730 aaKnown RBP eCLIP7.63□□□□□ -1.19
VPS41-214ENST00000490924 CTDSPL2Q05D32 466 aa7.63□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms