RNA–Protein interactions for RNA: ENST00000489352.5

HDAC6-233, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 585 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-233ENST00000489352 ROCK2O75116 1388 aaKnown RBP16.33■□□□□ 0.2
HDAC6-233ENST00000489352 ZPR1O75312 459 aa16.32■□□□□ 0.2
HDAC6-233ENST00000489352 ITGBL1O95965 494 aaPredicted RBP16.32■□□□□ 0.2
HDAC6-233ENST00000489352 ECE1P42892 770 aa16.32■□□□□ 0.2
HDAC6-233ENST00000489352 AFDNP55196 1824 aaKnown RBP16.32■□□□□ 0.2
HDAC6-233ENST00000489352 USP42Q9H9J4 1324 aaKnown RBP16.32■□□□□ 0.2
HDAC6-233ENST00000489352 ZNF219Q9P2Y4 722 aaPredicted RBP16.32■□□□□ 0.2
HDAC6-233ENST00000489352 DGKZQ13574 1117 aa16.31■□□□□ 0.2
HDAC6-233ENST00000489352 C2CD5Q86YS7 1000 aa16.31■□□□□ 0.2
HDAC6-233ENST00000489352 IFNL2Q8IZJ0 200 aa16.31■□□□□ 0.2
HDAC6-233ENST00000489352 TSKSQ9UJT2 592 aa16.31■□□□□ 0.2
HDAC6-233ENST00000489352 GPR101Q96P66 508 aaPredicted RBP16.3■□□□□ 0.2
HDAC6-233ENST00000489352 TAF1DQ9H5J8 278 aaPredicted RBP16.3■□□□□ 0.2
HDAC6-233ENST00000489352 FER1L6Q2WGJ9 1857 aa16.29■□□□□ 0.2
HDAC6-233ENST00000489352 KDRP35968 1356 aa16.29■□□□□ 0.2
HDAC6-233ENST00000489352 TM4SF1P30408 202 aa16.29■□□□□ 0.2
HDAC6-233ENST00000489352 HSP90AB2PQ58FF8 381 aa16.29■□□□□ 0.2
HDAC6-233ENST00000489352 INSRP06213 1382 aa16.28■□□□□ 0.2
HDAC6-233ENST00000489352 CNTROBQ8N137 903 aa16.28■□□□□ 0.2
HDAC6-233ENST00000489352 ZNF622Q969S3 477 aaKnown RBP eCLIP16.28■□□□□ 0.22e-7■□□□□ 9.6
HDAC6-233ENST00000489352 CAPNS2Q96L46 248 aa16.28■□□□□ 0.2
HDAC6-233ENST00000489352 SLC4A9Q96Q91 983 aa16.28■□□□□ 0.2
HDAC6-233ENST00000489352 C21orf2O43822 256 aa16.27■□□□□ 0.2
HDAC6-233ENST00000489352 CRKLP46109 303 aaKnown RBP16.27■□□□□ 0.2
HDAC6-233ENST00000489352 TAOK3Q9H2K8 898 aa16.27■□□□□ 0.2
HDAC6-233ENST00000489352 CA12O43570 354 aa16.26■□□□□ 0.19
HDAC6-233ENST00000489352 PHKG2P15735 406 aa16.26■□□□□ 0.19
HDAC6-233ENST00000489352 PNMA8AQ86V59 439 aaPredicted RBP16.26■□□□□ 0.19
HDAC6-233ENST00000489352 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.26■□□□□ 0.191e-11■■□□□ 11.5
HDAC6-233ENST00000489352 HACL1Q9UJ83 578 aa16.26■□□□□ 0.19
HDAC6-233ENST00000489352 FLT4P35916 1363 aa16.26■□□□□ 0.19
HDAC6-233ENST00000489352 USPL1Q5W0Q7 1092 aa16.25■□□□□ 0.19
HDAC6-233ENST00000489352 PTCD1O75127 700 aaKnown RBP16.24■□□□□ 0.19
HDAC6-233ENST00000489352 SERPINB2P05120 415 aa16.24■□□□□ 0.19
HDAC6-233ENST00000489352 SOX10P56693 466 aa16.24■□□□□ 0.19
HDAC6-233ENST00000489352 MAP1SQ66K74 1059 aaPredicted RBP16.24■□□□□ 0.19
HDAC6-233ENST00000489352 CYP4F22Q6NT55 531 aa16.24■□□□□ 0.19
HDAC6-233ENST00000489352 GCC1Q96CN9 775 aa16.24■□□□□ 0.19
HDAC6-233ENST00000489352 L3MBTL3Q96JM7 780 aaPredicted RBP16.24■□□□□ 0.19
HDAC6-233ENST00000489352 CACNA1SQ13698 1873 aa16.23■□□□□ 0.19
HDAC6-233ENST00000489352 ERVV-2B6SEH9 535 aa16.23■□□□□ 0.19
HDAC6-233ENST00000489352 EPHX2P34913 555 aa16.23■□□□□ 0.19
HDAC6-233ENST00000489352 THSD7BQ9C0I4 1608 aa16.23■□□□□ 0.19
HDAC6-233ENST00000489352 MAP2K2P36507 400 aa16.22■□□□□ 0.19
HDAC6-233ENST00000489352 LTBP3Q9NS15 1303 aa16.21■□□□□ 0.19
HDAC6-233ENST00000489352 TRPM7Q96QT4 1865 aa16.21■□□□□ 0.19
HDAC6-233ENST00000489352 CABP4P57796 275 aa16.21■□□□□ 0.19
HDAC6-233ENST00000489352 NFIXQ14938 502 aa16.21■□□□□ 0.19
HDAC6-233ENST00000489352 GGNBP2Q9H3C7 697 aa16.21■□□□□ 0.19
HDAC6-233ENST00000489352 DDX21Q9NR30 783 aaKnown RBP eCLIP16.21■□□□□ 0.19
HDAC6-233ENST00000489352 PDZRN3Q9UPQ7 1066 aa16.21■□□□□ 0.19
HDAC6-233ENST00000489352 NRXN2Q9P2S2 1712 aa16.21■□□□□ 0.19
HDAC6-233ENST00000489352 PPM1GO15355 546 aaPredicted RBP16.2■□□□□ 0.18
HDAC6-233ENST00000489352 HSP90AB1P08238 724 aaKnown RBP16.2■□□□□ 0.18
HDAC6-233ENST00000489352 SOGA3Q5TF21 947 aa16.2■□□□□ 0.18
HDAC6-233ENST00000489352 L3MBTL2Q969R5 705 aa16.2■□□□□ 0.18
HDAC6-233ENST00000489352 KIF24Q5T7B8 1368 aa16.2■□□□□ 0.18
HDAC6-233ENST00000489352 PDE6BP35913 854 aa16.19■□□□□ 0.18
HDAC6-233ENST00000489352 AOC2O75106 756 aa16.18■□□□□ 0.18
HDAC6-233ENST00000489352 PUS7Q96PZ0 661 aaKnown RBP16.18■□□□□ 0.18
HDAC6-233ENST00000489352 LTBP1Q14766 1721 aa16.18■□□□□ 0.18
HDAC6-233ENST00000489352 ADAMTSL1Q8N6G6 1762 aa16.18■□□□□ 0.18
HDAC6-233ENST00000489352 NBPF15Q8N660 670 aa16.17■□□□□ 0.18
HDAC6-233ENST00000489352 FYB1O15117 783 aa16.16■□□□□ 0.18
HDAC6-233ENST00000489352 TONSLQ96HA7 1378 aa16.15■□□□□ 0.18
HDAC6-233ENST00000489352 NPHP1O15259 732 aa16.15■□□□□ 0.18
HDAC6-233ENST00000489352 INTS5Q6P9B9 1019 aaKnown RBP16.15■□□□□ 0.18
HDAC6-233ENST00000489352 BICDL1Q6ZP65 573 aa16.15■□□□□ 0.18
HDAC6-233ENST00000489352 CNKSR1Q969H4 720 aa16.15■□□□□ 0.18
HDAC6-233ENST00000489352 NARFQ9UHQ1 456 aa16.15■□□□□ 0.18
HDAC6-233ENST00000489352 RNF123Q5XPI4 1314 aa16.15■□□□□ 0.18
HDAC6-233ENST00000489352 BRPF1P55201 1214 aaPredicted RBP16.14■□□□□ 0.17
HDAC6-233ENST00000489352 BRIP1Q9BX63 1249 aa16.14■□□□□ 0.17
HDAC6-233ENST00000489352 CARD11Q9BXL7 1154 aa16.14■□□□□ 0.17
HDAC6-233ENST00000489352 SLX4Q8IY92 1834 aa16.14■□□□□ 0.17
HDAC6-233ENST00000489352 ADAMTS7Q9UKP4 1686 aa16.14■□□□□ 0.17
HDAC6-233ENST00000489352 CARMIL3Q8ND23 1372 aa16.13■□□□□ 0.17
HDAC6-233ENST00000489352 KIF20BQ96Q89 1820 aa16.13■□□□□ 0.17
HDAC6-233ENST00000489352 EYA1Q99502 592 aa16.13■□□□□ 0.17
HDAC6-233ENST00000489352 TLL2Q9Y6L7 1015 aa16.13■□□□□ 0.17
HDAC6-233ENST00000489352 ANKRD31Q8N7Z5 1873 aa16.13■□□□□ 0.17
HDAC6-233ENST00000489352 TJP1Q07157 1748 aa16.13■□□□□ 0.17
HDAC6-233ENST00000489352 LMOD1P29536 600 aaPredicted RBP16.12■□□□□ 0.17
HDAC6-233ENST00000489352 EMILIN1Q9Y6C2 1016 aa16.12■□□□□ 0.17
HDAC6-233ENST00000489352 ZNF541Q9H0D2 1346 aa16.12■□□□□ 0.17
HDAC6-233ENST00000489352 NCAPD2Q15021 1401 aa16.11■□□□□ 0.17
HDAC6-233ENST00000489352 SOS1Q07889 1333 aaPredicted RBP16.11■□□□□ 0.17
HDAC6-233ENST00000489352 ST20-MTHFSA0A0A6YYL1 179 aa16.1■□□□□ 0.17
HDAC6-233ENST00000489352 MTHFSP49914 203 aa16.1■□□□□ 0.17
HDAC6-233ENST00000489352 CIAPIN1Q6FI81 312 aa16.1■□□□□ 0.17
HDAC6-233ENST00000489352 PRPF40BQ6NWY9 871 aaKnown RBP16.1■□□□□ 0.17
HDAC6-233ENST00000489352 NFATC2IPQ8NCF5 419 aa16.1■□□□□ 0.17
HDAC6-233ENST00000489352 COL11A2P13942 1736 aaPredicted RBP16.1■□□□□ 0.17
HDAC6-233ENST00000489352 COL15A1P39059 1388 aa16.1■□□□□ 0.17
HDAC6-233ENST00000489352 ANKRD26Q9UPS8 1709 aa16.09■□□□□ 0.17
HDAC6-233ENST00000489352 FMR1Q06787 632 aaKnown RBP eCLIP16.09■□□□□ 0.17
HDAC6-233ENST00000489352 PLEKHO1Q53GL0 409 aaPredicted RBP16.09■□□□□ 0.17
HDAC6-233ENST00000489352 CCDC93Q567U6 631 aa16.09■□□□□ 0.17
HDAC6-233ENST00000489352 HABP4Q5JVS0 413 aaKnown RBP16.09■□□□□ 0.17
HDAC6-233ENST00000489352 CST9Q5W186 159 aa16.09■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms