RNA–Protein interactions for RNA: ENST00000489318.1

C9orf3-220, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 3

Gene C9orf3, Length 682 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-220ENST00000489318 VSIG10Q8N0Z9 540 aa14.63□□□□□ -0.07
C9orf3-220ENST00000489318 CLUAP1Q96AJ1 413 aa14.63□□□□□ -0.07
C9orf3-220ENST00000489318 DBF4Q9UBU7 674 aaPredicted RBP14.63□□□□□ -0.07
C9orf3-220ENST00000489318 DDX19BQ9UMR2 479 aa14.63□□□□□ -0.07
C9orf3-220ENST00000489318 LY75O60449 1722 aa14.63□□□□□ -0.07
C9orf3-220ENST00000489318 ARFGEF2Q9Y6D5 1785 aa14.62□□□□□ -0.07
C9orf3-220ENST00000489318 G2E3Q7L622 706 aa14.62□□□□□ -0.07
C9orf3-220ENST00000489318 TMEM57Q8N5G2 664 aa14.62□□□□□ -0.07
C9orf3-220ENST00000489318 CHPF2Q9P2E5 772 aa14.62□□□□□ -0.07
C9orf3-220ENST00000489318 PDIA6Q15084 440 aa14.61□□□□□ -0.07
C9orf3-220ENST00000489318 INTS3Q68E01 1043 aaKnown RBP14.61□□□□□ -0.07
C9orf3-220ENST00000489318 DDX21Q9NR30 783 aaKnown RBP eCLIP14.61□□□□□ -0.07
C9orf3-220ENST00000489318 ATG3Q9NT62 314 aa14.61□□□□□ -0.07
C9orf3-220ENST00000489318 ATP10DQ9P241 1426 aa14.6□□□□□ -0.07
C9orf3-220ENST00000489318 EIF2S2P20042 333 aaKnown RBP14.6□□□□□ -0.07
C9orf3-220ENST00000489318 ZNF772Q68DY9 489 aaPredicted RBP14.6□□□□□ -0.07
C9orf3-220ENST00000489318 LRP10Q7Z4F1 713 aa14.6□□□□□ -0.07
C9orf3-220ENST00000489318 IBTKQ9P2D0 1353 aaPredicted RBP14.6□□□□□ -0.07
C9orf3-220ENST00000489318 PRIM1P49642 420 aaKnown RBP14.59□□□□□ -0.07
C9orf3-220ENST00000489318 NECTIN2Q92692 538 aa14.59□□□□□ -0.07
C9orf3-220ENST00000489318 QTRT2Q9H974 415 aaKnown RBP14.59□□□□□ -0.07
C9orf3-220ENST00000489318 HYPKQ9NX55 129 aa14.59□□□□□ -0.07
C9orf3-220ENST00000489318 ASAP1Q9ULH1 1129 aa14.59□□□□□ -0.07
C9orf3-220ENST00000489318 B4GALNT3Q6L9W6 998 aa14.58□□□□□ -0.08
C9orf3-220ENST00000489318 ITPRIPQ8IWB1 547 aa14.58□□□□□ -0.08
C9orf3-220ENST00000489318 CCDC136Q96JN2 1154 aa14.58□□□□□ -0.08
C9orf3-220ENST00000489318 CHMP4BQ9H444 224 aaKnown RBP14.58□□□□□ -0.08
C9orf3-220ENST00000489318 PHAXQ9H814 394 aaKnown RBP14.58□□□□□ -0.08
C9orf3-220ENST00000489318 USP16Q9Y5T5 823 aa14.58□□□□□ -0.08
C9orf3-220ENST00000489318 ADCY9O60503 1353 aa14.58□□□□□ -0.08
C9orf3-220ENST00000489318 FKBP5Q13451 457 aaPredicted RBP14.57□□□□□ -0.08
C9orf3-220ENST00000489318 PROSER3Q2NL68 480 aa14.57□□□□□ -0.08
C9orf3-220ENST00000489318 SEPT12Q8IYM1 358 aa14.57□□□□□ -0.08
C9orf3-220ENST00000489318 TEX13AQ9BXU3 409 aaPredicted RBP14.57□□□□□ -0.08
C9orf3-220ENST00000489318 ZBTB40Q9NUA8 1239 aa14.57□□□□□ -0.08
C9orf3-220ENST00000489318 KAT6BQ8WYB5 2073 aa14.57□□□□□ -0.08
C9orf3-220ENST00000489318 KDM2BQ8NHM5 1336 aa14.57□□□□□ -0.08
C9orf3-220ENST00000489318 ZBTB7BO15156 539 aaPredicted RBP14.56□□□□□ -0.08
C9orf3-220ENST00000489318 CCT4P50991 539 aaKnown RBP14.56□□□□□ -0.08
C9orf3-220ENST00000489318 TAF1LQ8IZX4 1826 aa14.56□□□□□ -0.08
C9orf3-220ENST00000489318 PALLDQ8WX93 1383 aa14.56□□□□□ -0.08
C9orf3-220ENST00000489318 ANKRD36CQ5JPF3 1778 aa14.55□□□□□ -0.08
C9orf3-220ENST00000489318 AFDNP55196 1824 aaKnown RBP14.55□□□□□ -0.08
C9orf3-220ENST00000489318 A0A0G2JS52 829 aa14.55□□□□□ -0.08
C9orf3-220ENST00000489318 PTCD1O75127 700 aaKnown RBP14.55□□□□□ -0.08
C9orf3-220ENST00000489318 RBM6P78332 1123 aaKnown RBP14.55□□□□□ -0.08
C9orf3-220ENST00000489318 MYT1Q01538 1121 aa14.55□□□□□ -0.08
C9orf3-220ENST00000489318 SYTL4Q96C24 671 aaPredicted RBP14.55□□□□□ -0.08
C9orf3-220ENST00000489318 SLC4A9Q96Q91 983 aa14.55□□□□□ -0.08
C9orf3-220ENST00000489318 ANXA1P04083 346 aa14.54□□□□□ -0.08
C9orf3-220ENST00000489318 SMARCC1Q92922 1105 aaPredicted RBP14.54□□□□□ -0.08
C9orf3-220ENST00000489318 ACSBG1Q96GR2 724 aa14.54□□□□□ -0.08
C9orf3-220ENST00000489318 RGPD3A6NKT7 1758 aaPredicted RBP14.53□□□□□ -0.08
C9orf3-220ENST00000489318 BCORQ6W2J9 1755 aa14.53□□□□□ -0.08
C9orf3-220ENST00000489318 RGPD4Q7Z3J3 1758 aa14.53□□□□□ -0.08
C9orf3-220ENST00000489318 NBPF26B4DH59 902 aa14.53□□□□□ -0.08
C9orf3-220ENST00000489318 F6X3S4 739 aa14.53□□□□□ -0.08
C9orf3-220ENST00000489318 NBPF14Q5TI25 921 aa14.53□□□□□ -0.08
C9orf3-220ENST00000489318 NBPF10Q6P3W6 841 aaKnown RBP14.53□□□□□ -0.08
C9orf3-220ENST00000489318 KSR2Q6VAB6 950 aa14.53□□□□□ -0.08
C9orf3-220ENST00000489318 NBPF15Q8N660 670 aa14.53□□□□□ -0.08
C9orf3-220ENST00000489318 DNAAF4Q8WXU2 420 aa14.53□□□□□ -0.08
C9orf3-220ENST00000489318 KCNQ2O43526 872 aa14.52□□□□□ -0.09
C9orf3-220ENST00000489318 DDX58O95786 925 aaKnown RBP14.52□□□□□ -0.09
C9orf3-220ENST00000489318 DNAJC10Q8IXB1 793 aa14.52□□□□□ -0.09
C9orf3-220ENST00000489318 PCDHB15Q9Y5E8 787 aa14.52□□□□□ -0.09
C9orf3-220ENST00000489318 MYH14Q7Z406 1995 aaKnown RBP14.52□□□□□ -0.09
C9orf3-220ENST00000489318 PI4KAP2A4QPH2 592 aa14.51□□□□□ -0.09
C9orf3-220ENST00000489318 CYP19A1P11511 503 aaPredicted RBP14.51□□□□□ -0.09
C9orf3-220ENST00000489318 BEND3Q5T5X7 828 aa14.51□□□□□ -0.09
C9orf3-220ENST00000489318 CENPQQ7L2Z9 268 aaPredicted RBP14.51□□□□□ -0.09
C9orf3-220ENST00000489318 PI4KAP1Q8N8J0 262 aa14.51□□□□□ -0.09
C9orf3-220ENST00000489318 RBM42Q9BTD8 480 aaKnown RBP14.51□□□□□ -0.09
C9orf3-220ENST00000489318 TNS1Q9HBL0 1735 aaKnown RBP14.51□□□□□ -0.09
C9orf3-220ENST00000489318 SCN7AQ01118 1682 aa14.5□□□□□ -0.09
C9orf3-220ENST00000489318 LOC102724428A0A0B4J2F2 783 aa14.5□□□□□ -0.09
C9orf3-220ENST00000489318 STARD3NLO95772 234 aa14.5□□□□□ -0.09
C9orf3-220ENST00000489318 SIK1P57059 783 aa14.5□□□□□ -0.09
C9orf3-220ENST00000489318 XAGE3Q8WTP9 111 aa14.5□□□□□ -0.09
C9orf3-220ENST00000489318 ALDH1L1O75891 902 aa14.49□□□□□ -0.09
C9orf3-220ENST00000489318 MYL6BP14649 208 aa14.49□□□□□ -0.09
C9orf3-220ENST00000489318 HDAC1Q13547 482 aaPredicted RBP14.49□□□□□ -0.09
C9orf3-220ENST00000489318 SLC4A10Q6U841 1118 aa14.49□□□□□ -0.09
C9orf3-220ENST00000489318 COPS6Q7L5N1 327 aa14.49□□□□□ -0.09
C9orf3-220ENST00000489318 KRT27Q7Z3Y8 459 aa14.49□□□□□ -0.09
C9orf3-220ENST00000489318 SRCIN1Q9C0H9 1055 aa14.49□□□□□ -0.09
C9orf3-220ENST00000489318 RGS17Q9UGC6 210 aaPredicted RBP14.49□□□□□ -0.09
C9orf3-220ENST00000489318 MAP3K2Q9Y2U5 619 aa14.49□□□□□ -0.09
C9orf3-220ENST00000489318 NUP98P52948 1817 aa14.48□□□□□ -0.09
C9orf3-220ENST00000489318 A1BGP04217 495 aa14.48□□□□□ -0.09
C9orf3-220ENST00000489318 FAM196AQ6ZSG2 479 aa14.48□□□□□ -0.09
C9orf3-220ENST00000489318 PLBD2Q8NHP8 589 aa14.48□□□□□ -0.09
C9orf3-220ENST00000489318 MEIS3Q99687 375 aa14.48□□□□□ -0.09
C9orf3-220ENST00000489318 C4BP0C0L5 1744 aa14.48□□□□□ -0.09
C9orf3-220ENST00000489318 PIP4K2AP48426 406 aaPredicted RBP14.47□□□□□ -0.09
C9orf3-220ENST00000489318 ITPK1Q13572 414 aa14.47□□□□□ -0.09
C9orf3-220ENST00000489318 PTF1AQ7RTS3 328 aa14.47□□□□□ -0.09
C9orf3-220ENST00000489318 LINS1Q8NG48 757 aa14.47□□□□□ -0.09
C9orf3-220ENST00000489318 METTL22Q9BUU2 404 aaPredicted RBP14.47□□□□□ -0.09
C9orf3-220ENST00000489318 BCL11BQ9C0K0 894 aaPredicted RBP14.47□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms