RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 ZNF496Q96IT1 587 aaPredicted RBP15.33■□□□□ 0.04
HDAC6-230ENST00000488543 KAT6BQ8WYB5 2073 aa15.33■□□□□ 0.04
HDAC6-230ENST00000488543 NWD2Q9ULI1 1742 aa15.33■□□□□ 0.04
HDAC6-230ENST00000488543 CCDC30Q5VVM6 783 aa15.33■□□□□ 0.04
HDAC6-230ENST00000488543 MRC1P22897 1456 aa15.32■□□□□ 0.04
HDAC6-230ENST00000488543 ERVV-2B6SEH9 535 aa15.32■□□□□ 0.04
HDAC6-230ENST00000488543 GIGYF1O75420 1035 aaPredicted RBP15.32■□□□□ 0.04
HDAC6-230ENST00000488543 HDGFL1Q5TGJ6 251 aa15.32■□□□□ 0.04
HDAC6-230ENST00000488543 BARGINQ6ZT62 677 aa15.32■□□□□ 0.04
HDAC6-230ENST00000488543 A0A0G2JS52 829 aa15.32■□□□□ 0.04
HDAC6-230ENST00000488543 MARCH10Q8NA82 808 aaPredicted RBP15.32■□□□□ 0.04
HDAC6-230ENST00000488543 HEG1Q9ULI3 1381 aa15.31■□□□□ 0.04
HDAC6-230ENST00000488543 ANXA1P04083 346 aa15.31■□□□□ 0.04
HDAC6-230ENST00000488543 STK31Q9BXU1 1019 aa15.31■□□□□ 0.04
HDAC6-230ENST00000488543 HOXB7P09629 217 aa15.31■□□□□ 0.04
HDAC6-230ENST00000488543 C8orf34Q49A92 452 aa15.31■□□□□ 0.04
HDAC6-230ENST00000488543 SYTL4Q96C24 671 aaPredicted RBP15.31■□□□□ 0.04
HDAC6-230ENST00000488543 CDCA7Q9BWT1 371 aaPredicted RBP15.31■□□□□ 0.04
HDAC6-230ENST00000488543 CHMP4BQ9H444 224 aaKnown RBP15.31■□□□□ 0.04
HDAC6-230ENST00000488543 PDZRN3Q9UPQ7 1066 aa15.31■□□□□ 0.04
HDAC6-230ENST00000488543 TTC5Q8N0Z6 440 aa15.3■□□□□ 0.04
HDAC6-230ENST00000488543 PIGBQ92521 554 aa15.3■□□□□ 0.04
HDAC6-230ENST00000488543 PTCD1O75127 700 aaKnown RBP15.29■□□□□ 0.04
HDAC6-230ENST00000488543 C1orf115Q9H7X2 142 aa15.29■□□□□ 0.04
HDAC6-230ENST00000488543 SMC5Q8IY18 1101 aa15.29■□□□□ 0.04
HDAC6-230ENST00000488543 ACSBG1Q96GR2 724 aa15.29■□□□□ 0.04
HDAC6-230ENST00000488543 PHAXQ9H814 394 aaKnown RBP15.29■□□□□ 0.04
HDAC6-230ENST00000488543 TMOD3Q9NYL9 352 aa15.29■□□□□ 0.04
HDAC6-230ENST00000488543 ASAP1Q9ULH1 1129 aa15.29■□□□□ 0.04
HDAC6-230ENST00000488543 C5P01031 1676 aa15.29■□□□□ 0.04
HDAC6-230ENST00000488543 PRIM1P49642 420 aaKnown RBP15.28■□□□□ 0.04
HDAC6-230ENST00000488543 FLIIQ13045 1269 aa15.28■□□□□ 0.04
HDAC6-230ENST00000488543 FAM182BQ5T319 152 aa15.28■□□□□ 0.04
HDAC6-230ENST00000488543 GJD4Q96KN9 370 aaPredicted RBP15.28■□□□□ 0.04
HDAC6-230ENST00000488543 CHPF2Q9P2E5 772 aa15.28■□□□□ 0.04
HDAC6-230ENST00000488543 USP16Q9Y5T5 823 aa15.28■□□□□ 0.04
HDAC6-230ENST00000488543 TNS2Q63HR2 1409 aa15.28■□□□□ 0.04
HDAC6-230ENST00000488543 EP400Q96L91 3159 aa15.28■□□□□ 0.04
HDAC6-230ENST00000488543 F6X3S4 739 aa15.27■□□□□ 0.04
HDAC6-230ENST00000488543 PROSER3Q2NL68 480 aa15.27■□□□□ 0.04
HDAC6-230ENST00000488543 SIRT2Q8IXJ6 389 aa15.27■□□□□ 0.04
HDAC6-230ENST00000488543 PIP4K2AP48426 406 aaPredicted RBP15.27■□□□□ 0.03
HDAC6-230ENST00000488543 QTRT2Q9H974 415 aaKnown RBP15.27■□□□□ 0.03
HDAC6-230ENST00000488543 ATP10DQ9P241 1426 aa15.27■□□□□ 0.03
HDAC6-230ENST00000488543 TOGARAM1Q9Y4F4 1720 aa15.26■□□□□ 0.03
HDAC6-230ENST00000488543 FMNL2Q96PY5 1086 aa15.26■□□□□ 0.03
HDAC6-230ENST00000488543 WNK3Q9BYP7 1800 aa15.26■□□□□ 0.03
HDAC6-230ENST00000488543 PXDNLA1KZ92 1463 aa15.26■□□□□ 0.03
HDAC6-230ENST00000488543 FAM161AQ3B820 660 aa15.25■□□□□ 0.03
HDAC6-230ENST00000488543 GLI3P10071 1580 aa15.25■□□□□ 0.03
HDAC6-230ENST00000488543 KCNQ2O43526 872 aa15.25■□□□□ 0.03
HDAC6-230ENST00000488543 ATG3Q9NT62 314 aa15.25■□□□□ 0.03
HDAC6-230ENST00000488543 TRPC5Q9UL62 973 aaPredicted RBP15.25■□□□□ 0.03
HDAC6-230ENST00000488543 SNRPA1P09661 255 aaKnown RBP15.24■□□□□ 0.03
HDAC6-230ENST00000488543 CCT4P50991 539 aaKnown RBP15.24■□□□□ 0.03
HDAC6-230ENST00000488543 FKBP5Q13451 457 aaPredicted RBP15.24■□□□□ 0.03
HDAC6-230ENST00000488543 MEIS3Q99687 375 aa15.24■□□□□ 0.03
HDAC6-230ENST00000488543 PLCB2Q00722 1185 aa15.24■□□□□ 0.03
HDAC6-230ENST00000488543 PDIA6Q15084 440 aa15.23■□□□□ 0.03
HDAC6-230ENST00000488543 SLC4A10Q6U841 1118 aa15.23■□□□□ 0.03
HDAC6-230ENST00000488543 MYL6BP14649 208 aa15.23■□□□□ 0.03
HDAC6-230ENST00000488543 PTF1AQ7RTS3 328 aa15.23■□□□□ 0.03
HDAC6-230ENST00000488543 IL27Q8NEV9 243 aa15.23■□□□□ 0.03
HDAC6-230ENST00000488543 PAPPAQ13219 1627 aa15.23■□□□□ 0.03
HDAC6-230ENST00000488543 RBM42Q9BTD8 480 aaKnown RBP15.22■□□□□ 0.03
HDAC6-230ENST00000488543 DBF4Q9UBU7 674 aaPredicted RBP15.22■□□□□ 0.03
HDAC6-230ENST00000488543 BCL9O00512 1426 aa15.22■□□□□ 0.03
HDAC6-230ENST00000488543 CHMP4AQ9BY43 222 aa15.22■□□□□ 0.03
HDAC6-230ENST00000488543 UBR2Q8IWV8 1755 aa15.22■□□□□ 0.03
HDAC6-230ENST00000488543 ATRNO75882 1429 aa15.22■□□□□ 0.03
HDAC6-230ENST00000488543 NUCB1Q02818 461 aa15.21■□□□□ 0.03
HDAC6-230ENST00000488543 ANKRD44Q8N8A2 993 aa15.21■□□□□ 0.03
HDAC6-230ENST00000488543 DDRGK1Q96HY6 314 aa15.21■□□□□ 0.03
HDAC6-230ENST00000488543 SEC24BO95487 1268 aa15.21■□□□□ 0.02
HDAC6-230ENST00000488543 AIMP1Q12904 312 aaKnown RBP15.21■□□□□ 0.02
HDAC6-230ENST00000488543 SEPT12Q8IYM1 358 aa15.21■□□□□ 0.02
HDAC6-230ENST00000488543 SLC4A9Q96Q91 983 aa15.21■□□□□ 0.02
HDAC6-230ENST00000488543 ITGB4P16144 1822 aa15.21■□□□□ 0.02
HDAC6-230ENST00000488543 LAMB4A4D0S4 1761 aa15.2■□□□□ 0.02
HDAC6-230ENST00000488543 CEP85Q6P2H3 762 aa15.2■□□□□ 0.02
HDAC6-230ENST00000488543 TNKS1BP1Q9C0C2 1729 aaKnown RBP15.2■□□□□ 0.02
HDAC6-230ENST00000488543 ONECUT3O60422 494 aaPredicted RBP15.2■□□□□ 0.02
HDAC6-230ENST00000488543 A1BGP04217 495 aa15.2■□□□□ 0.02
HDAC6-230ENST00000488543 GCC1Q96CN9 775 aa15.2■□□□□ 0.02
HDAC6-230ENST00000488543 KCPQ6ZWJ8 1503 aa15.2■□□□□ 0.02
HDAC6-230ENST00000488543 PI4KAP2A4QPH2 592 aa15.19■□□□□ 0.02
HDAC6-230ENST00000488543 NFKBIBQ15653 356 aa15.19■□□□□ 0.02
HDAC6-230ENST00000488543 PI4KAP1Q8N8J0 262 aa15.19■□□□□ 0.02
HDAC6-230ENST00000488543 DDX21Q9NR30 783 aaKnown RBP eCLIP15.19■□□□□ 0.02
HDAC6-230ENST00000488543 ADCY9O60503 1353 aa15.19■□□□□ 0.02
HDAC6-230ENST00000488543 DNAJC10Q8IXB1 793 aa15.19■□□□□ 0.02
HDAC6-230ENST00000488543 FBXO41Q8TF61 875 aa15.19■□□□□ 0.02
HDAC6-230ENST00000488543 NBPF26B4DH59 902 aa15.18■□□□□ 0.02
HDAC6-230ENST00000488543 NBPF14Q5TI25 921 aa15.18■□□□□ 0.02
HDAC6-230ENST00000488543 NBPF10Q6P3W6 841 aaKnown RBP15.18■□□□□ 0.02
HDAC6-230ENST00000488543 RPAP2Q8IXW5 612 aaPredicted RBP15.18■□□□□ 0.02
HDAC6-230ENST00000488543 NBPF15Q8N660 670 aa15.18■□□□□ 0.02
HDAC6-230ENST00000488543 DOT1LQ8TEK3 1739 aa15.17■□□□□ 0.02
HDAC6-230ENST00000488543 LRP10Q7Z4F1 713 aa15.17■□□□□ 0.02
HDAC6-230ENST00000488543 CHD1LQ86WJ1 897 aa15.17■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms