RNA–Protein interactions for RNA: ENST00000487428.1

PTPRE-209, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

TSL 3

Gene PTPRE, Length 325 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-209ENST00000487428 CRKLP46109 303 aaKnown RBP8.67□□□□□ -1.02
PTPRE-209ENST00000487428 NEUROD2Q15784 382 aa8.67□□□□□ -1.02
PTPRE-209ENST00000487428 ZNF827Q17R98 1081 aa8.67□□□□□ -1.02
PTPRE-209ENST00000487428 ANKRD36CQ5JPF3 1778 aa8.67□□□□□ -1.02
PTPRE-209ENST00000487428 INTS5Q6P9B9 1019 aaKnown RBP8.67□□□□□ -1.02
PTPRE-209ENST00000487428 PNPLA7Q6ZV29 1317 aa8.67□□□□□ -1.02
PTPRE-209ENST00000487428 TRMT2AQ8IZ69 625 aaKnown RBP8.67□□□□□ -1.02
PTPRE-209ENST00000487428 THUMPD2Q9BTF0 503 aaKnown RBP8.67□□□□□ -1.02
PTPRE-209ENST00000487428 CCDC87Q9NVE4 849 aa8.67□□□□□ -1.02
PTPRE-209ENST00000487428 NRXN2Q9P2S2 1712 aa8.67□□□□□ -1.02
PTPRE-209ENST00000487428 TSPYL4Q9UJ04 414 aa8.67□□□□□ -1.02
PTPRE-209ENST00000487428 RRP7AQ9Y3A4 280 aaKnown RBP8.67□□□□□ -1.02
PTPRE-209ENST00000487428 KCNQ3O43525 872 aa8.66□□□□□ -1.02
PTPRE-209ENST00000487428 EIF5P55010 431 aaKnown RBP8.66□□□□□ -1.02
PTPRE-209ENST00000487428 DNAJC10Q8IXB1 793 aa8.66□□□□□ -1.02
PTPRE-209ENST00000487428 ZNF428Q96B54 188 aa8.66□□□□□ -1.02
PTPRE-209ENST00000487428 RBM42Q9BTD8 480 aaKnown RBP8.66□□□□□ -1.02
PTPRE-209ENST00000487428 MBIPQ9NS73 344 aa8.66□□□□□ -1.02
PTPRE-209ENST00000487428 RTCBQ9Y3I0 505 aaKnown RBP8.66□□□□□ -1.02
PTPRE-209ENST00000487428 A0A087WZG4 1122 aa8.65□□□□□ -1.02
PTPRE-209ENST00000487428 CT47B1P0C2W7 299 aaPredicted RBP8.65□□□□□ -1.02
PTPRE-209ENST00000487428 AK7Q96M32 723 aa8.65□□□□□ -1.02
PTPRE-209ENST00000487428 MYH16Q9H6N6 1097 aa8.65□□□□□ -1.02
PTPRE-209ENST00000487428 TFCP2L1Q9NZI6 479 aa8.65□□□□□ -1.02
PTPRE-209ENST00000487428 COL15A1P39059 1388 aa8.64□□□□□ -1.03
PTPRE-209ENST00000487428 AFDNP55196 1824 aaKnown RBP8.64□□□□□ -1.03
PTPRE-209ENST00000487428 ZBED9Q6R2W3 1325 aa8.64□□□□□ -1.03
PTPRE-209ENST00000487428 E9PSI1 815 aa8.64□□□□□ -1.03
PTPRE-209ENST00000487428 GOLGA2Q08379 1002 aa8.64□□□□□ -1.03
PTPRE-209ENST00000487428 LRP10Q7Z4F1 713 aa8.64□□□□□ -1.03
PTPRE-209ENST00000487428 SGIP1Q9BQI5 828 aa8.64□□□□□ -1.03
PTPRE-209ENST00000487428 MTFR1LQ9H019 292 aa8.64□□□□□ -1.03
PTPRE-209ENST00000487428 USP16Q9Y5T5 823 aa8.64□□□□□ -1.03
PTPRE-209ENST00000487428 USP42Q9H9J4 1324 aaKnown RBP8.63□□□□□ -1.03
PTPRE-209ENST00000487428 FANCIQ9NVI1 1328 aa8.63□□□□□ -1.03
PTPRE-209ENST00000487428 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP8.63□□□□□ -1.03
PTPRE-209ENST00000487428 GNPATO15228 680 aa8.63□□□□□ -1.03
PTPRE-209ENST00000487428 KCNQ4P56696 695 aa8.63□□□□□ -1.03
PTPRE-209ENST00000487428 SLFN5Q08AF3 891 aa8.63□□□□□ -1.03
PTPRE-209ENST00000487428 R3HDM1Q15032 1099 aaKnown RBP8.63□□□□□ -1.03
PTPRE-209ENST00000487428 TRAPPC3LQ5T215 181 aa8.63□□□□□ -1.03
PTPRE-209ENST00000487428 CLEC4GQ6UXB4 293 aa8.63□□□□□ -1.03
PTPRE-209ENST00000487428 COL23A1Q86Y22 540 aaPredicted RBP8.63□□□□□ -1.03
PTPRE-209ENST00000487428 DDX21Q9NR30 783 aaKnown RBP eCLIP8.63□□□□□ -1.03
PTPRE-209ENST00000487428 MIS18AQ9NYP9 233 aa8.63□□□□□ -1.03
PTPRE-209ENST00000487428 NARFQ9UHQ1 456 aa8.63□□□□□ -1.03
PTPRE-209ENST00000487428 ZBTB1Q9Y2K1 713 aa8.63□□□□□ -1.03
PTPRE-209ENST00000487428 N4BP2Q86UW6 1770 aaPredicted RBP8.63□□□□□ -1.03
PTPRE-209ENST00000487428 IBTKQ9P2D0 1353 aaPredicted RBP8.62□□□□□ -1.03
PTPRE-209ENST00000487428 NBPF26B4DH59 902 aa8.62□□□□□ -1.03
PTPRE-209ENST00000487428 ERVV-1B6SEH8 477 aa8.62□□□□□ -1.03
PTPRE-209ENST00000487428 PDIA6Q15084 440 aa8.62□□□□□ -1.03
PTPRE-209ENST00000487428 DUSP27Q5VZP5 1158 aa8.62□□□□□ -1.03
PTPRE-209ENST00000487428 NBPF10Q6P3W6 841 aaKnown RBP8.62□□□□□ -1.03
PTPRE-209ENST00000487428 AMIGO3Q86WK7 504 aa8.62□□□□□ -1.03
PTPRE-209ENST00000487428 NLGN1Q8N2Q7 840 aa8.62□□□□□ -1.03
PTPRE-209ENST00000487428 NBPF15Q8N660 670 aa8.62□□□□□ -1.03
PTPRE-209ENST00000487428 ARHGEF1Q92888 912 aaKnown RBP8.62□□□□□ -1.03
PTPRE-209ENST00000487428 DBF4Q9UBU7 674 aaPredicted RBP8.62□□□□□ -1.03
PTPRE-209ENST00000487428 ARFGEF2Q9Y6D5 1785 aa8.62□□□□□ -1.03
PTPRE-209ENST00000487428 BRCA1P38398 1863 aaKnown RBP8.62□□□□□ -1.03
PTPRE-209ENST00000487428 DLEC1Q9Y238 1755 aa8.61□□□□□ -1.03
PTPRE-209ENST00000487428 BRPF1P55201 1214 aaPredicted RBP8.61□□□□□ -1.03
PTPRE-209ENST00000487428 SPON1Q9HCB6 807 aa8.61□□□□□ -1.03
PTPRE-209ENST00000487428 ATP10DQ9P241 1426 aa8.61□□□□□ -1.03
PTPRE-209ENST00000487428 PRAMEF22A3QJZ6 481 aa8.6□□□□□ -1.03
PTPRE-209ENST00000487428 VAMP4O75379 141 aa8.6□□□□□ -1.03
PTPRE-209ENST00000487428 A1BGP04217 495 aa8.6□□□□□ -1.03
PTPRE-209ENST00000487428 GYS1P13807 737 aa8.6□□□□□ -1.03
PTPRE-209ENST00000487428 RFC4P35249 363 aa8.6□□□□□ -1.03
PTPRE-209ENST00000487428 PTGER2P43116 358 aa8.6□□□□□ -1.03
PTPRE-209ENST00000487428 TWISTNBQ3B726 338 aaPredicted RBP8.6□□□□□ -1.03
PTPRE-209ENST00000487428 CCDC30Q5VVM6 783 aa8.6□□□□□ -1.03
PTPRE-209ENST00000487428 C8orf58Q8NAV2 365 aa8.6□□□□□ -1.03
PTPRE-209ENST00000487428 SPINK5Q9NQ38 1064 aaPredicted RBP8.6□□□□□ -1.03
PTPRE-209ENST00000487428 HYPKQ9NX55 129 aa8.6□□□□□ -1.03
PTPRE-209ENST00000487428 KIAA1551Q9HCM1 1747 aa8.6□□□□□ -1.03
PTPRE-209ENST00000487428 CAMTA2O94983 1202 aa8.59□□□□□ -1.03
PTPRE-209ENST00000487428 TM4SF1P30408 202 aa8.59□□□□□ -1.03
PTPRE-209ENST00000487428 HDGFL1Q5TGJ6 251 aa8.59□□□□□ -1.03
PTPRE-209ENST00000487428 RIC1Q4ADV7 1423 aa8.59□□□□□ -1.03
PTPRE-209ENST00000487428 MYH3P11055 1940 aa8.58□□□□□ -1.04
PTPRE-209ENST00000487428 LAMB2P55268 1798 aa8.58□□□□□ -1.04
PTPRE-209ENST00000487428 RNF123Q5XPI4 1314 aa8.58□□□□□ -1.04
PTPRE-209ENST00000487428 MAP3K15Q6ZN16 1313 aa8.58□□□□□ -1.04
PTPRE-209ENST00000487428 ANKRD31Q8N7Z5 1873 aa8.58□□□□□ -1.04
PTPRE-209ENST00000487428 PSDA5PKW4 1024 aaPredicted RBP8.58□□□□□ -1.04
PTPRE-209ENST00000487428 ZPR1O75312 459 aa8.58□□□□□ -1.04
PTPRE-209ENST00000487428 ALDH1L2Q3SY69 923 aa8.58□□□□□ -1.04
PTPRE-209ENST00000487428 NPM2Q86SE8 214 aaKnown RBP8.58□□□□□ -1.04
PTPRE-209ENST00000487428 PDGFDQ9GZP0 370 aaPredicted RBP8.58□□□□□ -1.04
PTPRE-209ENST00000487428 BCL2L12Q9HB09 334 aa8.58□□□□□ -1.04
PTPRE-209ENST00000487428 ZNF652Q9Y2D9 606 aa8.58□□□□□ -1.04
PTPRE-209ENST00000487428 LAS1LQ9Y4W2 734 aaKnown RBP8.58□□□□□ -1.04
PTPRE-209ENST00000487428 SRCAPQ6ZRS2 3230 aa8.58□□□□□ -1.04
PTPRE-209ENST00000487428 ARFGEF1Q9Y6D6 1849 aa8.57□□□□□ -1.04
PTPRE-209ENST00000487428 CANXP27824 592 aaKnown RBP8.57□□□□□ -1.04
PTPRE-209ENST00000487428 POLD1P28340 1107 aa8.57□□□□□ -1.04
PTPRE-209ENST00000487428 HNRNPUQ00839 825 aaKnown RBP eCLIP8.57□□□□□ -1.04
PTPRE-209ENST00000487428 EXOSC9Q06265 439 aaKnown RBP8.57□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms