RNA–Protein interactions for RNA: ENST00000486665.5

HDAC6-229, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 598 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-229ENST00000486665 SMIM5Q71RC9 77 aa16.61■□□□□ 0.25
HDAC6-229ENST00000486665 ATG3Q9NT62 314 aa16.61■□□□□ 0.25
HDAC6-229ENST00000486665 ASAP1Q9ULH1 1129 aa16.61■□□□□ 0.25
HDAC6-229ENST00000486665 FANCIQ9NVI1 1328 aa16.61■□□□□ 0.25
HDAC6-229ENST00000486665 VIRMAQ69YN4 1812 aaKnown RBP16.61■□□□□ 0.25
HDAC6-229ENST00000486665 C4BP0C0L5 1744 aa16.6■□□□□ 0.25
HDAC6-229ENST00000486665 SIPA1L3O60292 1781 aaPredicted RBP16.6■□□□□ 0.25
HDAC6-229ENST00000486665 C1QTNF8P60827 252 aa16.6■□□□□ 0.25
HDAC6-229ENST00000486665 MYH16Q9H6N6 1097 aa16.6■□□□□ 0.25
HDAC6-229ENST00000486665 PALLDQ8WX93 1383 aa16.6■□□□□ 0.25
HDAC6-229ENST00000486665 UBR3Q6ZT12 1888 aa16.59■□□□□ 0.25
HDAC6-229ENST00000486665 ZNF790Q6PG37 636 aa16.59■□□□□ 0.25
HDAC6-229ENST00000486665 EIF4A1P60842 406 aaKnown RBP16.58■□□□□ 0.24
HDAC6-229ENST00000486665 KRT24Q2M2I5 525 aa16.58■□□□□ 0.24
HDAC6-229ENST00000486665 EXOSC9Q06265 439 aaKnown RBP16.57■□□□□ 0.24
HDAC6-229ENST00000486665 C8orf58Q8NAV2 365 aa16.57■□□□□ 0.24
HDAC6-229ENST00000486665 ZNF496Q96IT1 587 aaPredicted RBP16.56■□□□□ 0.24
HDAC6-229ENST00000486665 ELL2O00472 640 aaPredicted RBP16.55■□□□□ 0.24
HDAC6-229ENST00000486665 PTCD1O75127 700 aaKnown RBP16.55■□□□□ 0.24
HDAC6-229ENST00000486665 TTC5Q8N0Z6 440 aa16.55■□□□□ 0.24
HDAC6-229ENST00000486665 TSPYL6Q8N831 410 aa16.55■□□□□ 0.24
HDAC6-229ENST00000486665 SLC4A9Q96Q91 983 aa16.54■□□□□ 0.24
HDAC6-229ENST00000486665 KDM3BQ7LBC6 1761 aa16.54■□□□□ 0.24
HDAC6-229ENST00000486665 HEG1Q9ULI3 1381 aa16.53■□□□□ 0.24
HDAC6-229ENST00000486665 CEP350Q5VT06 3117 aa16.53■□□□□ 0.24
HDAC6-229ENST00000486665 PRAMEF22A3QJZ6 481 aa16.53■□□□□ 0.24
HDAC6-229ENST00000486665 SMARCC1Q92922 1105 aaPredicted RBP16.53■□□□□ 0.24
HDAC6-229ENST00000486665 FMNL2Q96PY5 1086 aa16.53■□□□□ 0.24
HDAC6-229ENST00000486665 RBM42Q9BTD8 480 aaKnown RBP16.53■□□□□ 0.24
HDAC6-229ENST00000486665 KCPQ6ZWJ8 1503 aa16.52■□□□□ 0.24
HDAC6-229ENST00000486665 VAMP4O75379 141 aa16.52■□□□□ 0.24
HDAC6-229ENST00000486665 GIGYF1O75420 1035 aaPredicted RBP16.52■□□□□ 0.24
HDAC6-229ENST00000486665 LINC00116Q8NCU8 138 aa16.52■□□□□ 0.24
HDAC6-229ENST00000486665 PHF14O94880 888 aa16.51■□□□□ 0.23
HDAC6-229ENST00000486665 WWC3Q9ULE0 1092 aa16.51■□□□□ 0.23
HDAC6-229ENST00000486665 LOC102724428A0A0B4J2F2 783 aa16.5■□□□□ 0.23
HDAC6-229ENST00000486665 SIK1P57059 783 aa16.5■□□□□ 0.23
HDAC6-229ENST00000486665 ITPK1Q13572 414 aa16.5■□□□□ 0.23
HDAC6-229ENST00000486665 TWISTNBQ3B726 338 aaPredicted RBP16.5■□□□□ 0.23
HDAC6-229ENST00000486665 AK7Q96M32 723 aa16.5■□□□□ 0.23
HDAC6-229ENST00000486665 ATP10DQ9P241 1426 aa16.5■□□□□ 0.23
HDAC6-229ENST00000486665 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.49■□□□□ 0.23
HDAC6-229ENST00000486665 GRIN3BO60391 1043 aa16.49■□□□□ 0.23
HDAC6-229ENST00000486665 SNRPA1P09661 255 aaKnown RBP16.49■□□□□ 0.23
HDAC6-229ENST00000486665 DNAJC10Q8IXB1 793 aa16.49■□□□□ 0.23
HDAC6-229ENST00000486665 CD2APQ9Y5K6 639 aa16.49■□□□□ 0.23
HDAC6-229ENST00000486665 USP16Q9Y5T5 823 aa16.49■□□□□ 0.23
HDAC6-229ENST00000486665 VSIG10Q8N0Z9 540 aa16.48■□□□□ 0.23
HDAC6-229ENST00000486665 FLAD1Q8NFF5 587 aa16.48■□□□□ 0.23
HDAC6-229ENST00000486665 UBR2Q8IWV8 1755 aa16.48■□□□□ 0.23
HDAC6-229ENST00000486665 TCERG1O14776 1098 aaKnown RBP16.47■□□□□ 0.23
HDAC6-229ENST00000486665 EIF2S2P20042 333 aaKnown RBP16.47■□□□□ 0.23
HDAC6-229ENST00000486665 ATP6V1AP38606 617 aa16.47■□□□□ 0.23
HDAC6-229ENST00000486665 NECTIN2Q92692 538 aa16.47■□□□□ 0.23
HDAC6-229ENST00000486665 KIAA1551Q9HCM1 1747 aa16.47■□□□□ 0.23
HDAC6-229ENST00000486665 HOXB7P09629 217 aa16.46■□□□□ 0.23
HDAC6-229ENST00000486665 ADCY9O60503 1353 aa16.46■□□□□ 0.23
HDAC6-229ENST00000486665 SOS1Q07889 1333 aaPredicted RBP16.45■□□□□ 0.22
HDAC6-229ENST00000486665 CT47B1P0C2W7 299 aaPredicted RBP16.44■□□□□ 0.22
HDAC6-229ENST00000486665 CYP19A1P11511 503 aaPredicted RBP16.44■□□□□ 0.22
HDAC6-229ENST00000486665 SSFA2P28290 1259 aa16.44■□□□□ 0.22
HDAC6-229ENST00000486665 HDGFL1Q5TGJ6 251 aa16.44■□□□□ 0.22
HDAC6-229ENST00000486665 TEX13AQ9BXU3 409 aaPredicted RBP16.44■□□□□ 0.22
HDAC6-229ENST00000486665 COL5A3P25940 1745 aaPredicted RBP16.43■□□□□ 0.22
HDAC6-229ENST00000486665 GNPATO15228 680 aa16.43■□□□□ 0.22
HDAC6-229ENST00000486665 A1BGP04217 495 aa16.43■□□□□ 0.22
HDAC6-229ENST00000486665 RARSP54136 660 aaKnown RBP16.43■□□□□ 0.22
HDAC6-229ENST00000486665 SSH1Q8WYL5 1049 aa16.43■□□□□ 0.22
HDAC6-229ENST00000486665 N4BP2Q86UW6 1770 aaPredicted RBP16.43■□□□□ 0.22
HDAC6-229ENST00000486665 KIF13BQ9NQT8 1826 aa16.42■□□□□ 0.22
HDAC6-229ENST00000486665 PIP4K2AP48426 406 aaPredicted RBP16.42■□□□□ 0.22
HDAC6-229ENST00000486665 PDIA6Q15084 440 aa16.42■□□□□ 0.22
HDAC6-229ENST00000486665 CCDC30Q5VVM6 783 aa16.42■□□□□ 0.22
HDAC6-229ENST00000486665 ZNF526Q8TF50 670 aaPredicted RBP16.42■□□□□ 0.22
HDAC6-229ENST00000486665 RCAN3Q9UKA8 241 aa16.42■□□□□ 0.22
HDAC6-229ENST00000486665 MYH14Q7Z406 1995 aaKnown RBP16.41■□□□□ 0.22
HDAC6-229ENST00000486665 NBPF26B4DH59 902 aa16.41■□□□□ 0.22
HDAC6-229ENST00000486665 BCAR3O75815 825 aa16.41■□□□□ 0.22
HDAC6-229ENST00000486665 STARD3NLO95772 234 aa16.41■□□□□ 0.22
HDAC6-229ENST00000486665 ANXA1P04083 346 aa16.41■□□□□ 0.22
HDAC6-229ENST00000486665 PROSER3Q2NL68 480 aa16.41■□□□□ 0.22
HDAC6-229ENST00000486665 NBPF10Q6P3W6 841 aaKnown RBP16.41■□□□□ 0.22
HDAC6-229ENST00000486665 INTS5Q6P9B9 1019 aaKnown RBP16.41■□□□□ 0.22
HDAC6-229ENST00000486665 MRPL50Q8N5N7 158 aaKnown RBP16.41■□□□□ 0.22
HDAC6-229ENST00000486665 NBPF15Q8N660 670 aa16.41■□□□□ 0.22
HDAC6-229ENST00000486665 BCL2L13Q9BXK5 485 aa16.41■□□□□ 0.22
HDAC6-229ENST00000486665 CHPF2Q9P2E5 772 aa16.41■□□□□ 0.22
HDAC6-229ENST00000486665 TJP1Q07157 1748 aa16.41■□□□□ 0.22
HDAC6-229ENST00000486665 CICQ96RK0 1608 aaPredicted RBP16.41■□□□□ 0.22
HDAC6-229ENST00000486665 ZNF831Q5JPB2 1677 aa16.4■□□□□ 0.22
HDAC6-229ENST00000486665 ZNF428Q96B54 188 aa16.4■□□□□ 0.22
HDAC6-229ENST00000486665 C4AP0C0L4 1744 aa16.39■□□□□ 0.21
HDAC6-229ENST00000486665 SLC4A2P04920 1241 aa16.39■□□□□ 0.21
HDAC6-229ENST00000486665 CENPBP07199 599 aaPredicted RBP16.39■□□□□ 0.21
HDAC6-229ENST00000486665 MMP10P09238 476 aa16.39■□□□□ 0.21
HDAC6-229ENST00000486665 CRKLP46109 303 aaKnown RBP16.39■□□□□ 0.21
HDAC6-229ENST00000486665 ALDH1L2Q3SY69 923 aa16.39■□□□□ 0.21
HDAC6-229ENST00000486665 G2E3Q7L622 706 aa16.39■□□□□ 0.21
HDAC6-229ENST00000486665 PXDNLA1KZ92 1463 aa16.39■□□□□ 0.21
HDAC6-229ENST00000486665 MYL6BP14649 208 aa16.38■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 264.2 ms