RNA–Protein interactions for RNA: ENST00000486533.1

COL12A1-208, Transcript of collagen type XII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL12A1, Length 1,554 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1-208ENST00000486533 FLAD1Q8NFF5 587 aa11.74□□□□□ -0.53
COL12A1-208ENST00000486533 DCAF5Q96JK2 942 aa11.74□□□□□ -0.53
COL12A1-208ENST00000486533 ERVV-2B6SEH9 535 aa11.73□□□□□ -0.53
COL12A1-208ENST00000486533 ATP6V1AP38606 617 aa11.73□□□□□ -0.53
COL12A1-208ENST00000486533 ANP32AP39687 249 aaKnown RBP11.73□□□□□ -0.53
COL12A1-208ENST00000486533 B4GALNT3Q6L9W6 998 aa11.73□□□□□ -0.53
COL12A1-208ENST00000486533 FBXO3Q9UK99 471 aa11.73□□□□□ -0.53
COL12A1-208ENST00000486533 KDRP35968 1356 aa11.73□□□□□ -0.53
COL12A1-208ENST00000486533 UBR3Q6ZT12 1888 aa11.73□□□□□ -0.53
COL12A1-208ENST00000486533 NUBP1P53384 320 aa11.72□□□□□ -0.53
COL12A1-208ENST00000486533 CABP4P57796 275 aa11.72□□□□□ -0.53
COL12A1-208ENST00000486533 LINC00116Q8NCU8 138 aa11.72□□□□□ -0.53
COL12A1-208ENST00000486533 ATG3Q9NT62 314 aa11.72□□□□□ -0.53
COL12A1-208ENST00000486533 KDM6AO15550 1401 aaPredicted RBP11.72□□□□□ -0.53
COL12A1-208ENST00000486533 ASTLQ6HA08 431 aaPredicted RBP11.71□□□□□ -0.53
COL12A1-208ENST00000486533 AMIGO3Q86WK7 504 aa11.71□□□□□ -0.53
COL12A1-208ENST00000486533 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.71□□□□□ -0.54
COL12A1-208ENST00000486533 GNPATO15228 680 aa11.71□□□□□ -0.54
COL12A1-208ENST00000486533 HMOX1P09601 288 aa11.71□□□□□ -0.54
COL12A1-208ENST00000486533 ITPK1Q13572 414 aa11.71□□□□□ -0.54
COL12A1-208ENST00000486533 SMIM5Q71RC9 77 aa11.71□□□□□ -0.54
COL12A1-208ENST00000486533 DIAPH1O60610 1272 aaKnown RBP11.7□□□□□ -0.54
COL12A1-208ENST00000486533 GPR162Q16538 588 aa11.7□□□□□ -0.54
COL12A1-208ENST00000486533 SSFA2P28290 1259 aa11.69□□□□□ -0.54
COL12A1-208ENST00000486533 RRP1P56182 461 aaKnown RBP11.69□□□□□ -0.54
COL12A1-208ENST00000486533 NLGN2Q8NFZ4 835 aa11.69□□□□□ -0.54
COL12A1-208ENST00000486533 NPC1L1Q9UHC9 1359 aa11.69□□□□□ -0.54
COL12A1-208ENST00000486533 SCN11AQ9UI33 1791 aa11.68□□□□□ -0.54
COL12A1-208ENST00000486533 ATMINO43313 823 aaPredicted RBP11.68□□□□□ -0.54
COL12A1-208ENST00000486533 NFATC2IPQ8NCF5 419 aa11.68□□□□□ -0.54
COL12A1-208ENST00000486533 RCAN3Q9UKA8 241 aa11.68□□□□□ -0.54
COL12A1-208ENST00000486533 CHD4Q14839 1912 aa11.68□□□□□ -0.54
COL12A1-208ENST00000486533 TCERG1O14776 1098 aaKnown RBP11.67□□□□□ -0.54
COL12A1-208ENST00000486533 MAP3K13O43283 966 aa11.67□□□□□ -0.54
COL12A1-208ENST00000486533 PTCD1O75127 700 aaKnown RBP11.67□□□□□ -0.54
COL12A1-208ENST00000486533 AKAP4Q5JQC9 854 aa11.67□□□□□ -0.54
COL12A1-208ENST00000486533 ZNF831Q5JPB2 1677 aa11.67□□□□□ -0.54
COL12A1-208ENST00000486533 U2SURPO15042 1029 aaKnown RBP11.67□□□□□ -0.54
COL12A1-208ENST00000486533 SLC4A9Q96Q91 983 aa11.67□□□□□ -0.54
COL12A1-208ENST00000486533 RTCBQ9Y3I0 505 aaKnown RBP11.67□□□□□ -0.54
COL12A1-208ENST00000486533 VIRMAQ69YN4 1812 aaKnown RBP11.66□□□□□ -0.54
COL12A1-208ENST00000486533 COL5A3P25940 1745 aaPredicted RBP11.66□□□□□ -0.54
COL12A1-208ENST00000486533 NOP58Q9Y2X3 529 aaKnown RBP11.66□□□□□ -0.54
COL12A1-208ENST00000486533 COL3A1P02461 1466 aaPredicted RBP11.65□□□□□ -0.54
COL12A1-208ENST00000486533 MS4A1P11836 297 aa11.65□□□□□ -0.54
COL12A1-208ENST00000486533 MTHFSDQ2M296 383 aaKnown RBP11.65□□□□□ -0.54
COL12A1-208ENST00000486533 TRAPPC3LQ5T215 181 aa11.65□□□□□ -0.54
COL12A1-208ENST00000486533 CNTNAP4Q9C0A0 1308 aa11.65□□□□□ -0.55
COL12A1-208ENST00000486533 NGEFQ8N5V2 710 aa11.64□□□□□ -0.55
COL12A1-208ENST00000486533 SLC52A2Q9HAB3 445 aa11.64□□□□□ -0.55
COL12A1-208ENST00000486533 LGR6Q9HBX8 967 aa11.64□□□□□ -0.55
COL12A1-208ENST00000486533 CD2APQ9Y5K6 639 aa11.64□□□□□ -0.55
COL12A1-208ENST00000486533 MYH14Q7Z406 1995 aaKnown RBP11.63□□□□□ -0.55
COL12A1-208ENST00000486533 RC3H1Q5TC82 1133 aaKnown RBP11.63□□□□□ -0.55
COL12A1-208ENST00000486533 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.63□□□□□ -0.55
COL12A1-208ENST00000486533 CFAP53Q96M91 514 aa11.63□□□□□ -0.55
COL12A1-208ENST00000486533 TJP1Q07157 1748 aa11.63□□□□□ -0.55
COL12A1-208ENST00000486533 RNMTO43148 476 aaKnown RBP11.62□□□□□ -0.55
COL12A1-208ENST00000486533 RFC4P35249 363 aa11.62□□□□□ -0.55
COL12A1-208ENST00000486533 CRKLP46109 303 aaKnown RBP11.62□□□□□ -0.55
COL12A1-208ENST00000486533 ARHGEF1Q92888 912 aaKnown RBP11.62□□□□□ -0.55
COL12A1-208ENST00000486533 POTEB2H3BUK9 544 aa11.62□□□□□ -0.55
COL12A1-208ENST00000486533 RPS6KA4O75676 772 aa11.62□□□□□ -0.55
COL12A1-208ENST00000486533 MMP10P09238 476 aa11.62□□□□□ -0.55
COL12A1-208ENST00000486533 YBX3P16989 372 aaKnown RBP eCLIP11.62□□□□□ -0.55
COL12A1-208ENST00000486533 WDR43Q15061 677 aaKnown RBP eCLIP11.62□□□□□ -0.55
COL12A1-208ENST00000486533 ZNF784Q8NCA9 323 aaPredicted RBP11.62□□□□□ -0.55
COL12A1-208ENST00000486533 FAM212AQ96EL1 285 aa11.62□□□□□ -0.55
COL12A1-208ENST00000486533 MRC1P22897 1456 aa11.62□□□□□ -0.55
COL12A1-208ENST00000486533 C4AP0C0L4 1744 aa11.61□□□□□ -0.55
COL12A1-208ENST00000486533 GRIN3BO60391 1043 aa11.61□□□□□ -0.55
COL12A1-208ENST00000486533 SLC39A6Q13433 755 aa11.61□□□□□ -0.55
COL12A1-208ENST00000486533 NLGN1Q8N2Q7 840 aa11.61□□□□□ -0.55
COL12A1-208ENST00000486533 WWC3Q9ULE0 1092 aa11.61□□□□□ -0.55
COL12A1-208ENST00000486533 TRPC6Q9Y210 931 aa11.61□□□□□ -0.55
COL12A1-208ENST00000486533 CICQ96RK0 1608 aaPredicted RBP11.6□□□□□ -0.55
COL12A1-208ENST00000486533 ADAMTS7Q9UKP4 1686 aa11.6□□□□□ -0.55
COL12A1-208ENST00000486533 VASPP50552 380 aaPredicted RBP11.6□□□□□ -0.55
COL12A1-208ENST00000486533 GAS2L2Q8NHY3 880 aa11.6□□□□□ -0.55
COL12A1-208ENST00000486533 IPO9Q96P70 1041 aaKnown RBP11.6□□□□□ -0.55
COL12A1-208ENST00000486533 GNAT3A8MTJ3 354 aa11.59□□□□□ -0.55
COL12A1-208ENST00000486533 GYS1P13807 737 aa11.59□□□□□ -0.55
COL12A1-208ENST00000486533 PPP2R1AP30153 589 aa11.59□□□□□ -0.55
COL12A1-208ENST00000486533 ATN1P54259 1190 aaPredicted RBP11.59□□□□□ -0.55
COL12A1-208ENST00000486533 DNAJC10Q8IXB1 793 aa11.59□□□□□ -0.55
COL12A1-208ENST00000486533 SLC39A7Q92504 469 aa11.59□□□□□ -0.55
COL12A1-208ENST00000486533 BMP2KQ9NSY1 1161 aaPredicted RBP11.59□□□□□ -0.55
COL12A1-208ENST00000486533 METRNQ9UJH8 293 aa11.59□□□□□ -0.55
COL12A1-208ENST00000486533 C7P10643 843 aa11.58□□□□□ -0.55
COL12A1-208ENST00000486533 PRKAR2BP31323 418 aa11.58□□□□□ -0.55
COL12A1-208ENST00000486533 TIE1P35590 1138 aa11.58□□□□□ -0.55
COL12A1-208ENST00000486533 TEFQ10587 303 aa11.58□□□□□ -0.55
COL12A1-208ENST00000486533 TTC5Q8N0Z6 440 aa11.58□□□□□ -0.55
COL12A1-208ENST00000486533 KCPQ6ZWJ8 1503 aa11.58□□□□□ -0.56
COL12A1-208ENST00000486533 U2AF1L5P0DN76 240 aaPredicted RBP11.58□□□□□ -0.56
COL12A1-208ENST00000486533 U2AF1Q01081 240 aaKnown RBP eCLIP11.58□□□□□ -0.56
COL12A1-208ENST00000486533 RTL5Q5HYW3 569 aaPredicted RBP11.58□□□□□ -0.56
COL12A1-208ENST00000486533 INTS5Q6P9B9 1019 aaKnown RBP11.58□□□□□ -0.56
COL12A1-208ENST00000486533 RSPH6AQ9H0K4 717 aa11.58□□□□□ -0.56
COL12A1-208ENST00000486533 CCDC87Q9NVE4 849 aa11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms