RNA–Protein interactions for RNA: ENST00000485955.1

VPS41-213, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-213ENST00000485955 FOXR1Q6PIV2 292 aa8.28□□□□□ -1.08
VPS41-213ENST00000485955 PGBD3Q8N328 593 aa8.28□□□□□ -1.08
VPS41-213ENST00000485955 WHAMMQ8TF30 809 aa8.28□□□□□ -1.08
VPS41-213ENST00000485955 L3MBTL2Q969R5 705 aa8.28□□□□□ -1.08
VPS41-213ENST00000485955 TSPAN10Q9H1Z9 355 aaPredicted RBP8.28□□□□□ -1.08
VPS41-213ENST00000485955 ARID3CA6NKF2 412 aa8.27□□□□□ -1.09
VPS41-213ENST00000485955 M0R2N6 131 aa8.27□□□□□ -1.09
VPS41-213ENST00000485955 NOS2P35228 1153 aa8.27□□□□□ -1.09
VPS41-213ENST00000485955 TXLNAP40222 546 aa8.27□□□□□ -1.09
VPS41-213ENST00000485955 DPYDQ12882 1025 aa8.27□□□□□ -1.09
VPS41-213ENST00000485955 TEAD4Q15561 434 aa8.27□□□□□ -1.09
VPS41-213ENST00000485955 LARP1Q6PKG0 1096 aaKnown RBP8.27□□□□□ -1.09
VPS41-213ENST00000485955 CRISPLD1Q9H336 500 aa8.27□□□□□ -1.09
VPS41-213ENST00000485955 C21orf2O43822 256 aa8.26□□□□□ -1.09
VPS41-213ENST00000485955 LGR5O75473 907 aa8.26□□□□□ -1.09
VPS41-213ENST00000485955 ADAMTS2O95450 1211 aa8.26□□□□□ -1.09
VPS41-213ENST00000485955 SEC13P55735 322 aa8.26□□□□□ -1.09
VPS41-213ENST00000485955 C1orf216Q8TAB5 229 aa8.26□□□□□ -1.09
VPS41-213ENST00000485955 C7orf43Q8WVR3 580 aa8.26□□□□□ -1.09
VPS41-213ENST00000485955 KLRG1Q96E93 195 aa8.26□□□□□ -1.09
VPS41-213ENST00000485955 A0A1W2PNR3 127 aa8.25□□□□□ -1.09
VPS41-213ENST00000485955 FAM196BA6NMK8 535 aa8.25□□□□□ -1.09
VPS41-213ENST00000485955 USP17L15C9J2P7 530 aa8.25□□□□□ -1.09
VPS41-213ENST00000485955 USP17L10C9JJH3 530 aa8.25□□□□□ -1.09
VPS41-213ENST00000485955 USP17L13C9JLJ4 530 aa8.25□□□□□ -1.09
VPS41-213ENST00000485955 USP17L12C9JPN9 530 aa8.25□□□□□ -1.09
VPS41-213ENST00000485955 USP17L11C9JVI0 530 aa8.25□□□□□ -1.09
VPS41-213ENST00000485955 USP17L21D6R901 530 aa8.25□□□□□ -1.09
VPS41-213ENST00000485955 USP17L18D6R9N7 530 aa8.25□□□□□ -1.09
VPS41-213ENST00000485955 USP17L22D6RA61 530 aa8.25□□□□□ -1.09
VPS41-213ENST00000485955 USP17L17D6RBQ6 530 aa8.25□□□□□ -1.09
VPS41-213ENST00000485955 USP17L19D6RCP7 530 aa8.25□□□□□ -1.09
VPS41-213ENST00000485955 USP17L20D6RJB6 530 aa8.25□□□□□ -1.09
VPS41-213ENST00000485955 SRSF11Q05519 484 aaKnown RBP8.25□□□□□ -1.09
VPS41-213ENST00000485955 USP17L24Q0WX57 530 aa8.25□□□□□ -1.09
VPS41-213ENST00000485955 LBRQ14739 615 aaKnown RBP8.25□□□□□ -1.09
VPS41-213ENST00000485955 NBPF1Q3BBV0 1214 aa8.25□□□□□ -1.09
VPS41-213ENST00000485955 ARSJQ5FYB0 599 aaPredicted RBP8.25□□□□□ -1.09
VPS41-213ENST00000485955 GAS2L2Q8NHY3 880 aa8.25□□□□□ -1.09
VPS41-213ENST00000485955 TRERF1Q96PN7 1200 aa8.25□□□□□ -1.09
VPS41-213ENST00000485955 ARXQ96QS3 562 aa8.25□□□□□ -1.09
VPS41-213ENST00000485955 ZIC5Q96T25 663 aa8.25□□□□□ -1.09
VPS41-213ENST00000485955 MBIPQ9NS73 344 aa8.25□□□□□ -1.09
VPS41-213ENST00000485955 RBM19Q9Y4C8 960 aaKnown RBP8.25□□□□□ -1.09
VPS41-213ENST00000485955 SERTM1A2A2V5 107 aa8.24□□□□□ -1.09
VPS41-213ENST00000485955 EML1O00423 815 aa8.24□□□□□ -1.09
VPS41-213ENST00000485955 BNIP3LO60238 219 aa8.24□□□□□ -1.09
VPS41-213ENST00000485955 SRPK2P78362 688 aaKnown RBP8.24□□□□□ -1.09
VPS41-213ENST00000485955 EFHC2Q5JST6 749 aa8.24□□□□□ -1.09
VPS41-213ENST00000485955 ZNF385CQ66K41 422 aaPredicted RBP8.24□□□□□ -1.09
VPS41-213ENST00000485955 ANKMY2Q8IV38 441 aa8.24□□□□□ -1.09
VPS41-213ENST00000485955 ABHD17AQ96GS6 310 aa8.24□□□□□ -1.09
VPS41-213ENST00000485955 CFHR5Q9BXR6 569 aa8.24□□□□□ -1.09
VPS41-213ENST00000485955 ZCCHC2Q9C0B9 1178 aaKnown RBP8.24□□□□□ -1.09
VPS41-213ENST00000485955 NDFIP2Q9NV92 336 aa8.24□□□□□ -1.09
VPS41-213ENST00000485955 ZDHHC3Q9NYG2 299 aa8.24□□□□□ -1.09
VPS41-213ENST00000485955 HCN2Q9UL51 889 aa8.24□□□□□ -1.09
VPS41-213ENST00000485955 ZNF232Q9UNY5 417 aa8.24□□□□□ -1.09
VPS41-213ENST00000485955 IGF1RP08069 1367 aa8.23□□□□□ -1.09
VPS41-213ENST00000485955 ATAD2Q6PL18 1390 aa8.23□□□□□ -1.09
VPS41-213ENST00000485955 MX2P20592 715 aa8.23□□□□□ -1.09
VPS41-213ENST00000485955 LYPD4Q6UWN0 246 aa8.23□□□□□ -1.09
VPS41-213ENST00000485955 HINFPQ9BQA5 517 aa8.23□□□□□ -1.09
VPS41-213ENST00000485955 TATP17735 454 aaPredicted RBP8.22□□□□□ -1.09
VPS41-213ENST00000485955 NLRP8Q86W28 1048 aa8.22□□□□□ -1.09
VPS41-213ENST00000485955 HCN4Q9Y3Q4 1203 aa8.22□□□□□ -1.09
VPS41-213ENST00000485955 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP8.21□□□□□ -1.1
VPS41-213ENST00000485955 C2CD2LO14523 706 aa8.21□□□□□ -1.1
VPS41-213ENST00000485955 PSMA6P60900 246 aaKnown RBP8.21□□□□□ -1.1
VPS41-213ENST00000485955 POTEAQ6S8J7 498 aa8.21□□□□□ -1.1
VPS41-213ENST00000485955 SCG3Q8WXD2 468 aaKnown RBP8.21□□□□□ -1.1
VPS41-213ENST00000485955 PCDHGC4Q9Y5F7 938 aa8.21□□□□□ -1.1
VPS41-213ENST00000485955 PPP1R12BO60237 982 aaPredicted RBP8.2□□□□□ -1.1
VPS41-213ENST00000485955 CTBSQ01459 385 aa8.2□□□□□ -1.1
VPS41-213ENST00000485955 BICDL1Q6ZP65 573 aa8.2□□□□□ -1.1
VPS41-213ENST00000485955 CHMP7Q8WUX9 453 aaPredicted RBP8.2□□□□□ -1.1
VPS41-213ENST00000485955 ACDQ96AP0 544 aa8.2□□□□□ -1.1
VPS41-213ENST00000485955 C1orf115Q9H7X2 142 aa8.2□□□□□ -1.1
VPS41-213ENST00000485955 ATXN7L1Q9ULK2 861 aaPredicted RBP8.2□□□□□ -1.1
VPS41-213ENST00000485955 FAM181BA6NEQ2 426 aa8.19□□□□□ -1.1
VPS41-213ENST00000485955 ATXN7O15265 892 aaPredicted RBP8.19□□□□□ -1.1
VPS41-213ENST00000485955 CELA2BP08218 269 aaPredicted RBP8.19□□□□□ -1.1
VPS41-213ENST00000485955 HIRAP54198 1017 aaPredicted RBP8.19□□□□□ -1.1
VPS41-213ENST00000485955 FIGNL1Q6PIW4 674 aa8.19□□□□□ -1.1
VPS41-213ENST00000485955 C14orf37Q86TY3 774 aa8.19□□□□□ -1.1
VPS41-213ENST00000485955 SVOPQ8N4V2 548 aa8.19□□□□□ -1.1
VPS41-213ENST00000485955 C2orf49Q9BVC5 232 aaPredicted RBP8.19□□□□□ -1.1
VPS41-213ENST00000485955 PHF24Q9UPV7 400 aa8.19□□□□□ -1.1
VPS41-213ENST00000485955 ARHGEF15O94989 841 aa8.18□□□□□ -1.1
VPS41-213ENST00000485955 FGFR3P22607 806 aa8.18□□□□□ -1.1
VPS41-213ENST00000485955 TNP2Q05952 138 aa8.18□□□□□ -1.1
VPS41-213ENST00000485955 LRRC69Q6ZNQ3 347 aa8.18□□□□□ -1.1
VPS41-213ENST00000485955 FAM200AQ8TCP9 573 aa8.18□□□□□ -1.1
VPS41-213ENST00000485955 PHACTR1Q9C0D0 580 aa8.18□□□□□ -1.1
VPS41-213ENST00000485955 NOVA2Q9UNW9 492 aaKnown RBP8.18□□□□□ -1.1
VPS41-213ENST00000485955 ADAMTS8Q9UP79 889 aa8.18□□□□□ -1.1
VPS41-213ENST00000485955 DCDC2BA2VCK2 349 aa8.17□□□□□ -1.1
VPS41-213ENST00000485955 MAPTP10636 758 aaKnown RBP8.17□□□□□ -1.1
VPS41-213ENST00000485955 STAG2Q8N3U4 1231 aa8.17□□□□□ -1.1
VPS41-213ENST00000485955 ZMIZ1Q9ULJ6 1067 aa8.17□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 94.9 ms