RNA–Protein interactions for RNA: ENST00000484254.1

CNTNAP3B-208, Transcript of contactin associated protein like 3B, human

TSL 3

Gene CNTNAP3B, Length 742 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CNTNAP3B-208	ENST00000484254	LMOD3	Q0VAK6	560 aa		29.18	■■■□□ 2.26
CNTNAP3B-208	ENST00000484254	CCDC184	Q52MB2	194 aa		29.18	■■■□□ 2.26
CNTNAP3B-208	ENST00000484254	SOS1	Q07889	1333 aa	Predicted RBP	29.18	■■■□□ 2.26
CNTNAP3B-208	ENST00000484254	MIS18A	Q9NYP9	233 aa		29.17	■■■□□ 2.26
CNTNAP3B-208	ENST00000484254	ZBTB1	Q9Y2K1	713 aa		29.17	■■■□□ 2.26
CNTNAP3B-208	ENST00000484254	RRP7A	Q9Y3A4	280 aa	Known RBP	29.16	■■■□□ 2.26
CNTNAP3B-208	ENST00000484254	NLGN1	Q8N2Q7	840 aa		29.15	■■■□□ 2.26
CNTNAP3B-208	ENST00000484254	GYS1	P13807	737 aa		29.14	■■■□□ 2.26
CNTNAP3B-208	ENST00000484254	SNRPA1	P09661	255 aa	Known RBP	29.13	■■■□□ 2.25
CNTNAP3B-208	ENST00000484254	NEUROD2	Q15784	382 aa		29.13	■■■□□ 2.25
CNTNAP3B-208	ENST00000484254	USP42	Q9H9J4	1324 aa	Known RBP	29.13	■■■□□ 2.25
CNTNAP3B-208	ENST00000484254	KDM3B	Q7LBC6	1761 aa		29.13	■■■□□ 2.25
CNTNAP3B-208	ENST00000484254	CANX	P27824	592 aa	Known RBP	29.12	■■■□□ 2.25
CNTNAP3B-208	ENST00000484254	KLHL34	Q8N239	644 aa		29.12	■■■□□ 2.25
CNTNAP3B-208	ENST00000484254	SRP68	Q9UHB9	627 aa	Known RBP	29.11	■■■□□ 2.25
CNTNAP3B-208	ENST00000484254	COL15A1	P39059	1388 aa		29.11	■■■□□ 2.25
CNTNAP3B-208	ENST00000484254	TRIM35	Q9UPQ4	493 aa		29.1	■■■□□ 2.25
CNTNAP3B-208	ENST00000484254	USP16	Q9Y5T5	823 aa		29.1	■■■□□ 2.25
CNTNAP3B-208	ENST00000484254	PRAMEF22	A3QJZ6	481 aa		29.09	■■■□□ 2.25
CNTNAP3B-208	ENST00000484254	MMP10	P09238	476 aa		29.09	■■■□□ 2.25
CNTNAP3B-208	ENST00000484254	EIF5	P55010	431 aa	Known RBP	29.09	■■■□□ 2.25
CNTNAP3B-208	ENST00000484254	MRS2	Q9HD23	443 aa		29.09	■■■□□ 2.25
CNTNAP3B-208	ENST00000484254	ZPR1	O75312	459 aa		29.08	■■■□□ 2.25
CNTNAP3B-208	ENST00000484254	BABAM1	Q9NWV8	329 aa		29.08	■■■□□ 2.25
CNTNAP3B-208	ENST00000484254	A1BG	P04217	495 aa		29.07	■■■□□ 2.24
CNTNAP3B-208	ENST00000484254	EIF4A1	P60842	406 aa	Known RBP	29.07	■■■□□ 2.24
CNTNAP3B-208	ENST00000484254	NARF	Q9UHQ1	456 aa		29.07	■■■□□ 2.24
CNTNAP3B-208	ENST00000484254	IL6ST	P40189	918 aa	Predicted RBP	29.06	■■■□□ 2.24
CNTNAP3B-208	ENST00000484254	TSPYL4	Q9UJ04	414 aa		29.06	■■■□□ 2.24
CNTNAP3B-208	ENST00000484254	CD2AP	Q9Y5K6	639 aa		29.06	■■■□□ 2.24
CNTNAP3B-208	ENST00000484254		A0A087WZG4	1122 aa		29.05	■■■□□ 2.24
CNTNAP3B-208	ENST00000484254	DCAF8L1	A6NGE4	600 aa		29.05	■■■□□ 2.24
CNTNAP3B-208	ENST00000484254	APAF1	O14727	1248 aa		29.05	■■■□□ 2.24
CNTNAP3B-208	ENST00000484254	FKBP8	Q14318	412 aa		29.05	■■■□□ 2.24
CNTNAP3B-208	ENST00000484254	USPL1	Q5W0Q7	1092 aa		29.05	■■■□□ 2.24
CNTNAP3B-208	ENST00000484254	NLGN2	Q8NFZ4	835 aa		29.04	■■■□□ 2.24
CNTNAP3B-208	ENST00000484254	GIGYF1	O75420	1035 aa	Predicted RBP	29.03	■■■□□ 2.24
CNTNAP3B-208	ENST00000484254	ZNF330	Q9Y3S2	320 aa	Predicted RBP	29.01	■■■□□ 2.23
CNTNAP3B-208	ENST00000484254	PARP3	Q9Y6F1	533 aa		29.01	■■■□□ 2.23
CNTNAP3B-208	ENST00000484254	LAMB4	A4D0S4	1761 aa		29.01	■■■□□ 2.23
CNTNAP3B-208	ENST00000484254	CHL1	O00533	1208 aa		28.99	■■■□□ 2.23
CNTNAP3B-208	ENST00000484254	NPM2	Q86SE8	214 aa	Known RBP	28.99	■■■□□ 2.23
CNTNAP3B-208	ENST00000484254	BCL2L12	Q9HB09	334 aa		28.99	■■■□□ 2.23
CNTNAP3B-208	ENST00000484254	TM4SF1	P30408	202 aa		28.98	■■■□□ 2.23
CNTNAP3B-208	ENST00000484254	PIP4K2A	P48426	406 aa	Predicted RBP	28.98	■■■□□ 2.23
CNTNAP3B-208	ENST00000484254	NBPF26	B4DH59	902 aa		28.97	■■■□□ 2.23
CNTNAP3B-208	ENST00000484254	DDR1	Q08345	913 aa		28.97	■■■□□ 2.23
CNTNAP3B-208	ENST00000484254	NBPF10	Q6P3W6	841 aa	Known RBP	28.97	■■■□□ 2.23
CNTNAP3B-208	ENST00000484254	NBPF15	Q8N660	670 aa		28.97	■■■□□ 2.23
CNTNAP3B-208	ENST00000484254	TBC1D2B	Q9UPU7	963 aa		28.97	■■■□□ 2.23
CNTNAP3B-208	ENST00000484254	LAS1L	Q9Y4W2	734 aa	Known RBP	28.95	■■■□□ 2.22
CNTNAP3B-208	ENST00000484254	SCN7A	Q01118	1682 aa		28.94	■■■□□ 2.22
CNTNAP3B-208	ENST00000484254	POLRMT	O00411	1230 aa	Known RBP	28.94	■■■□□ 2.22
CNTNAP3B-208	ENST00000484254	NFIX	Q14938	502 aa		28.94	■■■□□ 2.22
CNTNAP3B-208	ENST00000484254	KIF13B	Q9NQT8	1826 aa		28.94	■■■□□ 2.22
CNTNAP3B-208	ENST00000484254	C10orf71	Q711Q0	1435 aa		28.94	■■■□□ 2.22
CNTNAP3B-208	ENST00000484254	DZIP3	Q86Y13	1208 aa	Known RBP	28.93	■■■□□ 2.22
CNTNAP3B-208	ENST00000484254	CFAP44	Q96MT7	982 aa		28.93	■■■□□ 2.22
CNTNAP3B-208	ENST00000484254	CAMTA2	O94983	1202 aa		28.92	■■■□□ 2.22
CNTNAP3B-208	ENST00000484254	CALD1	Q05682	793 aa	Known RBP	28.92	■■■□□ 2.22
CNTNAP3B-208	ENST00000484254	GPR162	Q16538	588 aa		28.91	■■■□□ 2.22
CNTNAP3B-208	ENST00000484254	ZNF853	P0CG23	659 aa		28.89	■■■□□ 2.22
CNTNAP3B-208	ENST00000484254	ERBB4	Q15303	1308 aa		28.89	■■■□□ 2.21
CNTNAP3B-208	ENST00000484254	BCOR	Q6W2J9	1755 aa		28.88	■■■□□ 2.21
CNTNAP3B-208	ENST00000484254	TGFB2	P61812	414 aa		28.88	■■■□□ 2.21
CNTNAP3B-208	ENST00000484254	CCDC27	Q2M243	656 aa		28.88	■■■□□ 2.21
CNTNAP3B-208	ENST00000484254	TBC1D9B	Q66K14	1250 aa		28.88	■■■□□ 2.21
CNTNAP3B-208	ENST00000484254	PELP1	Q8IZL8	1130 aa	Known RBP	28.88	■■■□□ 2.21
CNTNAP3B-208	ENST00000484254	IFT57	Q9NWB7	429 aa		28.88	■■■□□ 2.21
CNTNAP3B-208	ENST00000484254	NCBP3	Q53F19	620 aa	Known RBP	28.87	■■■□□ 2.21
CNTNAP3B-208	ENST00000484254	MBIP	Q9NS73	344 aa		28.87	■■■□□ 2.21
CNTNAP3B-208	ENST00000484254	GNAI1	P63096	354 aa		28.86	■■■□□ 2.21
CNTNAP3B-208	ENST00000484254	BICDL1	Q6ZP65	573 aa		28.86	■■■□□ 2.21
CNTNAP3B-208	ENST00000484254	PXDNL	A1KZ92	1463 aa		28.85	■■■□□ 2.21
CNTNAP3B-208	ENST00000484254	RGL2	O15211	777 aa		28.85	■■■□□ 2.21
CNTNAP3B-208	ENST00000484254	SERPINB2	P05120	415 aa		28.85	■■■□□ 2.21
CNTNAP3B-208	ENST00000484254	EIF2S2	P20042	333 aa	Known RBP	28.85	■■■□□ 2.21
CNTNAP3B-208	ENST00000484254	KRT24	Q2M2I5	525 aa		28.85	■■■□□ 2.21
CNTNAP3B-208	ENST00000484254	CLEC4G	Q6UXB4	293 aa		28.85	■■■□□ 2.21
CNTNAP3B-208	ENST00000484254	KIAA1551	Q9HCM1	1747 aa		28.85	■■■□□ 2.21
CNTNAP3B-208	ENST00000484254	NRXN2	Q9P2S2	1712 aa		28.85	■■■□□ 2.21
CNTNAP3B-208	ENST00000484254	AFDN	P55196	1824 aa	Known RBP	28.85	■■■□□ 2.21
CNTNAP3B-208	ENST00000484254	MYL6B	P14649	208 aa		28.84	■■■□□ 2.21
CNTNAP3B-208	ENST00000484254	YBX3	P16989	372 aa	Known RBP eCLIP	28.84	■■■□□ 2.21
CNTNAP3B-208	ENST00000484254	FAM9B	Q8IZU0	186 aa		28.84	■■■□□ 2.21
CNTNAP3B-208	ENST00000484254	SENP3-EIF4A1	A0A087X0R7	540 aa		28.83	■■■□□ 2.21
CNTNAP3B-208	ENST00000484254	NGEF	Q8N5V2	710 aa		28.83	■■■□□ 2.21
CNTNAP3B-208	ENST00000484254	ZNF652	Q9Y2D9	606 aa		28.83	■■■□□ 2.21
CNTNAP3B-208	ENST00000484254	WWC1	Q8IX03	1113 aa		28.82	■■■□□ 2.2
CNTNAP3B-208	ENST00000484254	N4BP2	Q86UW6	1770 aa	Predicted RBP	28.81	■■■□□ 2.2
CNTNAP3B-208	ENST00000484254	CARMIL3	Q8ND23	1372 aa		28.81	■■■□□ 2.2
CNTNAP3B-208	ENST00000484254		A0A0G2JLW4	131 aa		28.81	■■■□□ 2.2
CNTNAP3B-208	ENST00000484254	HOXB7	P09629	217 aa		28.81	■■■□□ 2.2
CNTNAP3B-208	ENST00000484254	PDIA6	Q15084	440 aa		28.81	■■■□□ 2.2
CNTNAP3B-208	ENST00000484254	SETDB2	Q96T68	719 aa		28.81	■■■□□ 2.2
CNTNAP3B-208	ENST00000484254	DPEP1	P16444	411 aa		28.8	■■■□□ 2.2
CNTNAP3B-208	ENST00000484254	GRIN3B	O60391	1043 aa		28.79	■■■□□ 2.2
CNTNAP3B-208	ENST00000484254	ERVV-1	B6SEH8	477 aa		28.78	■■■□□ 2.2
CNTNAP3B-208	ENST00000484254	KIF6	Q6ZMV9	814 aa		28.78	■■■□□ 2.2
CNTNAP3B-208	ENST00000484254	TTLL7	Q6ZT98	887 aa		28.78	■■■□□ 2.2

Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms