RNA–Protein interactions for RNA: ENST00000483009.1

CCDC28B-205, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 5

Gene CCDC28B, Length 615 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-205ENST00000483009 USP42Q9H9J4 1324 aaKnown RBP20.71■□□□□ 0.91
CCDC28B-205ENST00000483009 CANXP27824 592 aaKnown RBP20.69■□□□□ 0.9
CCDC28B-205ENST00000483009 TMPOP42166 694 aaKnown RBP20.69■□□□□ 0.9
CCDC28B-205ENST00000483009 RIPK4P57078 832 aa20.69■□□□□ 0.9
CCDC28B-205ENST00000483009 CCDC146Q8IYE0 955 aa20.69■□□□□ 0.9
CCDC28B-205ENST00000483009 PNISRQ8TF01 805 aaKnown RBP20.69■□□□□ 0.9
CCDC28B-205ENST00000483009 THUMPD2Q9BTF0 503 aaKnown RBP20.69■□□□□ 0.9
CCDC28B-205ENST00000483009 ADAMTS8Q9UP79 889 aa20.69■□□□□ 0.9
CCDC28B-205ENST00000483009 COL15A1P39059 1388 aa20.69■□□□□ 0.9
CCDC28B-205ENST00000483009 RUNDC1Q96C34 613 aa20.68■□□□□ 0.9
CCDC28B-205ENST00000483009 ZPR1O75312 459 aa20.67■□□□□ 0.9
CCDC28B-205ENST00000483009 SNRPA1P09661 255 aaKnown RBP20.67■□□□□ 0.9
CCDC28B-205ENST00000483009 LMOD3Q0VAK6 560 aa20.67■□□□□ 0.9
CCDC28B-205ENST00000483009 MIS18AQ9NYP9 233 aa20.67■□□□□ 0.9
CCDC28B-205ENST00000483009 EIF5P55010 431 aaKnown RBP20.66■□□□□ 0.9
CCDC28B-205ENST00000483009 FKBP8Q14318 412 aa20.66■□□□□ 0.9
CCDC28B-205ENST00000483009 NARFQ9UHQ1 456 aa20.66■□□□□ 0.9
CCDC28B-205ENST00000483009 C4AP0C0L4 1744 aa20.65■□□□□ 0.9
CCDC28B-205ENST00000483009 A0A087WZG4 1122 aa20.65■□□□□ 0.9
CCDC28B-205ENST00000483009 USPL1Q5W0Q7 1092 aa20.65■□□□□ 0.9
CCDC28B-205ENST00000483009 RRP7AQ9Y3A4 280 aaKnown RBP20.65■□□□□ 0.9
CCDC28B-205ENST00000483009 USP16Q9Y5T5 823 aa20.65■□□□□ 0.9
CCDC28B-205ENST00000483009 PRAMEF22A3QJZ6 481 aa20.64■□□□□ 0.89
CCDC28B-205ENST00000483009 A1BGP04217 495 aa20.64■□□□□ 0.89
CCDC28B-205ENST00000483009 IL6STP40189 918 aaPredicted RBP20.64■□□□□ 0.89
CCDC28B-205ENST00000483009 GPR162Q16538 588 aa20.64■□□□□ 0.89
CCDC28B-205ENST00000483009 PARP3Q9Y6F1 533 aa20.64■□□□□ 0.89
CCDC28B-205ENST00000483009 ANP32CO43423 234 aa20.63■□□□□ 0.89
CCDC28B-205ENST00000483009 DLG5Q8TDM6 1919 aa20.63■□□□□ 0.89
CCDC28B-205ENST00000483009 NEUROD2Q15784 382 aa20.62■□□□□ 0.89
CCDC28B-205ENST00000483009 PELP1Q8IZL8 1130 aaKnown RBP20.62■□□□□ 0.89
CCDC28B-205ENST00000483009 ZNF330Q9Y3S2 320 aaPredicted RBP20.62■□□□□ 0.89
CCDC28B-205ENST00000483009 EIF4A1P60842 406 aaKnown RBP20.61■□□□□ 0.89
CCDC28B-205ENST00000483009 DDR1Q08345 913 aa20.61■□□□□ 0.89
CCDC28B-205ENST00000483009 NPM2Q86SE8 214 aaKnown RBP20.61■□□□□ 0.89
CCDC28B-205ENST00000483009 BCL2L12Q9HB09 334 aa20.61■□□□□ 0.89
CCDC28B-205ENST00000483009 C10orf71Q711Q0 1435 aa20.61■□□□□ 0.89
CCDC28B-205ENST00000483009 TM4SF1P30408 202 aa20.6■□□□□ 0.89
CCDC28B-205ENST00000483009 TSPYL4Q9UJ04 414 aa20.6■□□□□ 0.89
CCDC28B-205ENST00000483009 CCDC184Q52MB2 194 aa20.59■□□□□ 0.89
CCDC28B-205ENST00000483009 BABAM1Q9NWV8 329 aa20.59■□□□□ 0.89
CCDC28B-205ENST00000483009 POLRMTO00411 1230 aaKnown RBP20.58■□□□□ 0.89
CCDC28B-205ENST00000483009 GIGYF1O75420 1035 aaPredicted RBP20.58■□□□□ 0.89
CCDC28B-205ENST00000483009 NFIXQ14938 502 aa20.58■□□□□ 0.89
CCDC28B-205ENST00000483009 TRIM35Q9UPQ4 493 aa20.58■□□□□ 0.89
CCDC28B-205ENST00000483009 TBC1D2BQ9UPU7 963 aa20.58■□□□□ 0.89
CCDC28B-205ENST00000483009 YBX3P16989 372 aaKnown RBP eCLIP20.57■□□□□ 0.88
CCDC28B-205ENST00000483009 YY1P25490 414 aa20.57■□□□□ 0.88
CCDC28B-205ENST00000483009 PIP4K2AP48426 406 aaPredicted RBP20.57■□□□□ 0.88
CCDC28B-205ENST00000483009 TGFB2P61812 414 aa20.56■□□□□ 0.88
CCDC28B-205ENST00000483009 KDM3BQ7LBC6 1761 aa20.56■□□□□ 0.88
CCDC28B-205ENST00000483009 NBPF26B4DH59 902 aa20.55■□□□□ 0.88
CCDC28B-205ENST00000483009 APAF1O14727 1248 aa20.55■□□□□ 0.88
CCDC28B-205ENST00000483009 GRIN3BO60391 1043 aa20.55■□□□□ 0.88
CCDC28B-205ENST00000483009 CAMTA2O94983 1202 aa20.55■□□□□ 0.88
CCDC28B-205ENST00000483009 NBPF10Q6P3W6 841 aaKnown RBP20.55■□□□□ 0.88
CCDC28B-205ENST00000483009 DZIP3Q86Y13 1208 aaKnown RBP20.55■□□□□ 0.88
CCDC28B-205ENST00000483009 NBPF15Q8N660 670 aa20.55■□□□□ 0.88
CCDC28B-205ENST00000483009 MRS2Q9HD23 443 aa20.55■□□□□ 0.88
CCDC28B-205ENST00000483009 PXDNLA1KZ92 1463 aa20.55■□□□□ 0.88
CCDC28B-205ENST00000483009 CHL1O00533 1208 aa20.52■□□□□ 0.88
CCDC28B-205ENST00000483009 SERPINB2P05120 415 aa20.52■□□□□ 0.88
CCDC28B-205ENST00000483009 TBC1D9BQ66K14 1250 aa20.52■□□□□ 0.88
CCDC28B-205ENST00000483009 BICDL1Q6ZP65 573 aa20.52■□□□□ 0.88
CCDC28B-205ENST00000483009 WWC3Q9ULE0 1092 aa20.52■□□□□ 0.88
CCDC28B-205ENST00000483009 A0A0G2JLW4 131 aa20.51■□□□□ 0.87
CCDC28B-205ENST00000483009 DPEP1P16444 411 aa20.51■□□□□ 0.87
CCDC28B-205ENST00000483009 LAS1LQ9Y4W2 734 aaKnown RBP20.5■□□□□ 0.87
CCDC28B-205ENST00000483009 SCN7AQ01118 1682 aa20.5■□□□□ 0.87
CCDC28B-205ENST00000483009 KIF13BQ9NQT8 1826 aa20.5■□□□□ 0.87
CCDC28B-205ENST00000483009 ERBB4Q15303 1308 aa20.5■□□□□ 0.87
CCDC28B-205ENST00000483009 RGL2O15211 777 aa20.49■□□□□ 0.87
CCDC28B-205ENST00000483009 CLEC4GQ6UXB4 293 aa20.49■□□□□ 0.87
CCDC28B-205ENST00000483009 ZNF652Q9Y2D9 606 aa20.49■□□□□ 0.87
CCDC28B-205ENST00000483009 CARMIL3Q8ND23 1372 aa20.48■□□□□ 0.87
CCDC28B-205ENST00000483009 CFAP44Q96MT7 982 aa20.48■□□□□ 0.87
CCDC28B-205ENST00000483009 LAMB4A4D0S4 1761 aa20.48■□□□□ 0.87
CCDC28B-205ENST00000483009 CALD1Q05682 793 aaKnown RBP20.47■□□□□ 0.87
CCDC28B-205ENST00000483009 SETDB2Q96T68 719 aa20.47■□□□□ 0.87
CCDC28B-205ENST00000483009 EIF2S2P20042 333 aaKnown RBP20.46■□□□□ 0.87
CCDC28B-205ENST00000483009 KCNA3P22001 575 aa20.46■□□□□ 0.87
CCDC28B-205ENST00000483009 NGEFQ8N5V2 710 aa20.46■□□□□ 0.87
CCDC28B-205ENST00000483009 BCS1LQ9Y276 419 aa20.46■□□□□ 0.87
CCDC28B-205ENST00000483009 KIAA1551Q9HCM1 1747 aa20.45■□□□□ 0.86
CCDC28B-205ENST00000483009 MYL6BP14649 208 aa20.45■□□□□ 0.86
CCDC28B-205ENST00000483009 CHRNA5P30532 468 aa20.45■□□□□ 0.86
CCDC28B-205ENST00000483009 IFT57Q9NWB7 429 aa20.45■□□□□ 0.86
CCDC28B-205ENST00000483009 ZNF853P0CG23 659 aa20.44■□□□□ 0.86
CCDC28B-205ENST00000483009 KRT24Q2M2I5 525 aa20.44■□□□□ 0.86
CCDC28B-205ENST00000483009 PRR5LQ6MZQ0 368 aa20.44■□□□□ 0.86
CCDC28B-205ENST00000483009 MBIPQ9NS73 344 aa20.44■□□□□ 0.86
CCDC28B-205ENST00000483009 PIM2Q9P1W9 311 aa20.44■□□□□ 0.86
CCDC28B-205ENST00000483009 NRXN2Q9P2S2 1712 aa20.44■□□□□ 0.86
CCDC28B-205ENST00000483009 ERVV-1B6SEH8 477 aa20.43■□□□□ 0.86
CCDC28B-205ENST00000483009 GNAI1P63096 354 aa20.43■□□□□ 0.86
CCDC28B-205ENST00000483009 PDIA6Q15084 440 aa20.43■□□□□ 0.86
CCDC28B-205ENST00000483009 KIF6Q6ZMV9 814 aa20.43■□□□□ 0.86
CCDC28B-205ENST00000483009 TTLL7Q6ZT98 887 aa20.43■□□□□ 0.86
CCDC28B-205ENST00000483009 CNBD1Q8NA66 436 aa20.43■□□□□ 0.86
CCDC28B-205ENST00000483009 MAP3K15Q6ZN16 1313 aa20.43■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 91.4 ms