RNA–Protein interactions for RNA: ENST00000482996.5

VARS-225, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 728 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-225ENST00000482996 SRP68Q9UHB9 627 aaKnown RBP18.35■□□□□ 0.53
VARS-225ENST00000482996 CANXP27824 592 aaKnown RBP18.34■□□□□ 0.53
VARS-225ENST00000482996 WDR43Q15061 677 aaKnown RBP eCLIP18.34■□□□□ 0.539e-6■■■□□ 15.6
VARS-225ENST00000482996 TAF7Q15545 349 aaPredicted RBP18.34■□□□□ 0.53
VARS-225ENST00000482996 PARP3Q9Y6F1 533 aa18.34■□□□□ 0.53
VARS-225ENST00000482996 COL15A1P39059 1388 aa18.33■□□□□ 0.53
VARS-225ENST00000482996 C4AP0C0L4 1744 aa18.33■□□□□ 0.52
VARS-225ENST00000482996 KCNQ3O43525 872 aa18.33■□□□□ 0.52
VARS-225ENST00000482996 A0A087WZG4 1122 aa18.32■□□□□ 0.52
VARS-225ENST00000482996 PNISRQ8TF01 805 aaKnown RBP18.32■□□□□ 0.52
VARS-225ENST00000482996 ZNF316A6NFI3 1004 aaPredicted RBP18.31■□□□□ 0.52
VARS-225ENST00000482996 FKBP8Q14318 412 aa18.31■□□□□ 0.52
VARS-225ENST00000482996 NPM2Q86SE8 214 aaKnown RBP18.31■□□□□ 0.52
VARS-225ENST00000482996 NARFQ9UHQ1 456 aa18.31■□□□□ 0.52
VARS-225ENST00000482996 SNRPA1P09661 255 aaKnown RBP18.3■□□□□ 0.52
VARS-225ENST00000482996 USPL1Q5W0Q7 1092 aa18.3■□□□□ 0.52
VARS-225ENST00000482996 GRIN3BO60391 1043 aa18.29■□□□□ 0.52
VARS-225ENST00000482996 EIF5P55010 431 aaKnown RBP18.29■□□□□ 0.52
VARS-225ENST00000482996 RIPK4P57078 832 aa18.29■□□□□ 0.52
VARS-225ENST00000482996 LMOD3Q0VAK6 560 aa18.29■□□□□ 0.52
VARS-225ENST00000482996 DLG5Q8TDM6 1919 aa18.29■□□□□ 0.52
VARS-225ENST00000482996 IL6STP40189 918 aaPredicted RBP18.28■□□□□ 0.52
VARS-225ENST00000482996 MIS18AQ9NYP9 233 aa18.28■□□□□ 0.52
VARS-225ENST00000482996 ZNF330Q9Y3S2 320 aaPredicted RBP18.28■□□□□ 0.52
VARS-225ENST00000482996 UTRNP46939 3433 aa18.28■□□□□ 0.52
VARS-225ENST00000482996 C10orf71Q711Q0 1435 aa18.27■□□□□ 0.52
VARS-225ENST00000482996 A1BGP04217 495 aa18.27■□□□□ 0.52
VARS-225ENST00000482996 TMPOP42166 694 aaKnown RBP18.27■□□□□ 0.52
VARS-225ENST00000482996 TGFB2P61812 414 aa18.27■□□□□ 0.52
VARS-225ENST00000482996 RUNDC1Q96C34 613 aa18.27■□□□□ 0.52
VARS-225ENST00000482996 THUMPD2Q9BTF0 503 aaKnown RBP18.27■□□□□ 0.52
VARS-225ENST00000482996 GOLGB1Q14789 3259 aaKnown RBP18.26■□□□□ 0.51
VARS-225ENST00000482996 YBX3P16989 372 aaKnown RBP eCLIP18.26■□□□□ 0.511e-21■□□□□ 8.4
VARS-225ENST00000482996 DDR1Q08345 913 aa18.26■□□□□ 0.51
VARS-225ENST00000482996 CCDC146Q8IYE0 955 aa18.26■□□□□ 0.51
VARS-225ENST00000482996 USP16Q9Y5T5 823 aa18.26■□□□□ 0.51
VARS-225ENST00000482996 TM4SF1P30408 202 aa18.25■□□□□ 0.51
VARS-225ENST00000482996 ADAMTS8Q9UP79 889 aa18.25■□□□□ 0.51
VARS-225ENST00000482996 PRAMEF22A3QJZ6 481 aa18.24■□□□□ 0.51
VARS-225ENST00000482996 POLRMTO00411 1230 aaKnown RBP18.24■□□□□ 0.51
VARS-225ENST00000482996 NFIXQ14938 502 aa18.24■□□□□ 0.51
VARS-225ENST00000482996 NEUROD2Q15784 382 aa18.23■□□□□ 0.51
VARS-225ENST00000482996 BCL2L12Q9HB09 334 aa18.23■□□□□ 0.51
VARS-225ENST00000482996 TBC1D2BQ9UPU7 963 aa18.23■□□□□ 0.51
VARS-225ENST00000482996 RRP7AQ9Y3A4 280 aaKnown RBP18.23■□□□□ 0.51
VARS-225ENST00000482996 CHD4Q14839 1912 aa18.23■□□□□ 0.51
VARS-225ENST00000482996 PXDNLA1KZ92 1463 aa18.22■□□□□ 0.51
VARS-225ENST00000482996 KIF13BQ9NQT8 1826 aa18.22■□□□□ 0.51
VARS-225ENST00000482996 EIF4A1P60842 406 aaKnown RBP18.22■□□□□ 0.51
VARS-225ENST00000482996 TSPYL4Q9UJ04 414 aa18.22■□□□□ 0.51
VARS-225ENST00000482996 WWC3Q9ULE0 1092 aa18.22■□□□□ 0.51
VARS-225ENST00000482996 A0A0G2JLW4 131 aa18.21■□□□□ 0.51
VARS-225ENST00000482996 DZIP3Q86Y13 1208 aaKnown RBP18.21■□□□□ 0.51
VARS-225ENST00000482996 BABAM1Q9NWV8 329 aa18.21■□□□□ 0.51
VARS-225ENST00000482996 GIGYF1O75420 1035 aaPredicted RBP18.2■□□□□ 0.5
VARS-225ENST00000482996 DPEP1P16444 411 aa18.2■□□□□ 0.5
VARS-225ENST00000482996 PIP4K2AP48426 406 aaPredicted RBP18.2■□□□□ 0.5
VARS-225ENST00000482996 BICDL1Q6ZP65 573 aa18.2■□□□□ 0.5
VARS-225ENST00000482996 KDM3BQ7LBC6 1761 aa18.19■□□□□ 0.5
VARS-225ENST00000482996 ANP32CO43423 234 aa18.19■□□□□ 0.5
VARS-225ENST00000482996 CAMTA2O94983 1202 aa18.19■□□□□ 0.5
VARS-225ENST00000482996 SERPINB2P05120 415 aa18.19■□□□□ 0.5
VARS-225ENST00000482996 NBPF26B4DH59 902 aa18.18■□□□□ 0.5
VARS-225ENST00000482996 TBC1D9BQ66K14 1250 aa18.18■□□□□ 0.5
VARS-225ENST00000482996 NBPF10Q6P3W6 841 aaKnown RBP18.18■□□□□ 0.5
VARS-225ENST00000482996 NBPF15Q8N660 670 aa18.18■□□□□ 0.5
VARS-225ENST00000482996 BCS1LQ9Y276 419 aa18.18■□□□□ 0.5
VARS-225ENST00000482996 ZNF652Q9Y2D9 606 aa18.18■□□□□ 0.5
VARS-225ENST00000482996 SCN7AQ01118 1682 aa18.17■□□□□ 0.5
VARS-225ENST00000482996 CARMIL3Q8ND23 1372 aa18.17■□□□□ 0.5
VARS-225ENST00000482996 CLEC4GQ6UXB4 293 aa18.16■□□□□ 0.5
VARS-225ENST00000482996 SETDB2Q96T68 719 aa18.16■□□□□ 0.5
VARS-225ENST00000482996 PIM2Q9P1W9 311 aa18.16■□□□□ 0.5
VARS-225ENST00000482996 TRIM35Q9UPQ4 493 aa18.16■□□□□ 0.5
VARS-225ENST00000482996 N4BP2Q86UW6 1770 aaPredicted RBP18.16■□□□□ 0.5
VARS-225ENST00000482996 KIAA1551Q9HCM1 1747 aa18.15■□□□□ 0.5
VARS-225ENST00000482996 LAMB4A4D0S4 1761 aa18.15■□□□□ 0.5
VARS-225ENST00000482996 ZNF784Q8NCA9 323 aaPredicted RBP18.15■□□□□ 0.5
VARS-225ENST00000482996 RGL2O15211 777 aa18.14■□□□□ 0.49
VARS-225ENST00000482996 NPHP1O15259 732 aa18.14■□□□□ 0.49
VARS-225ENST00000482996 KCNA3P22001 575 aa18.14■□□□□ 0.49
VARS-225ENST00000482996 CHRNA5P30532 468 aa18.14■□□□□ 0.49
VARS-225ENST00000482996 DALRD3Q5D0E6 543 aaKnown RBP18.14■□□□□ 0.49
VARS-225ENST00000482996 LAS1LQ9Y4W2 734 aaKnown RBP18.14■□□□□ 0.49
VARS-225ENST00000482996 ERBB4Q15303 1308 aa18.14■□□□□ 0.49
VARS-225ENST00000482996 AFDNP55196 1824 aaKnown RBP18.14■□□□□ 0.49
VARS-225ENST00000482996 NRXN2Q9P2S2 1712 aa18.13■□□□□ 0.49
VARS-225ENST00000482996 CHL1O00533 1208 aa18.13■□□□□ 0.49
VARS-225ENST00000482996 APAF1O14727 1248 aa18.13■□□□□ 0.49
VARS-225ENST00000482996 NGEFQ8N5V2 710 aa18.12■□□□□ 0.49
VARS-225ENST00000482996 CNBD1Q8NA66 436 aa18.12■□□□□ 0.49
VARS-225ENST00000482996 PDZRN3Q9UPQ7 1066 aa18.12■□□□□ 0.49
VARS-225ENST00000482996 BCORQ6W2J9 1755 aa18.12■□□□□ 0.49
VARS-225ENST00000482996 H0YIN7 160 aa18.11■□□□□ 0.49
VARS-225ENST00000482996 MYL6BP14649 208 aa18.11■□□□□ 0.49
VARS-225ENST00000482996 EIF2S2P20042 333 aaKnown RBP18.11■□□□□ 0.49
VARS-225ENST00000482996 ST5P78524 1137 aa18.11■□□□□ 0.49
VARS-225ENST00000482996 CALD1Q05682 793 aaKnown RBP18.11■□□□□ 0.49
VARS-225ENST00000482996 CCDC184Q52MB2 194 aa18.11■□□□□ 0.49
VARS-225ENST00000482996 PRR5LQ6MZQ0 368 aa18.11■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms