RNA–Protein interactions for RNA: ENST00000482217.1

VPS41-212, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 951 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-212ENST00000482217 SLC27A3Q5K4L6 730 aa6.34□□□□□ -1.39
VPS41-212ENST00000482217 LCE2CQ5TA81 110 aa6.34□□□□□ -1.39
VPS41-212ENST00000482217 GAS2L2Q8NHY3 880 aa6.34□□□□□ -1.39
VPS41-212ENST00000482217 CNKSR1Q969H4 720 aa6.34□□□□□ -1.39
VPS41-212ENST00000482217 GRIP2Q9C0E4 1043 aa6.34□□□□□ -1.39
VPS41-212ENST00000482217 SLAIN2Q9P270 581 aa6.34□□□□□ -1.39
VPS41-212ENST00000482217 HRH3Q9Y5N1 445 aa6.34□□□□□ -1.39
VPS41-212ENST00000482217 SENP3-EIF4A1A0A087X0R7 540 aa6.33□□□□□ -1.4
VPS41-212ENST00000482217 SPATA31C2B4DYI2 1134 aa6.33□□□□□ -1.4
VPS41-212ENST00000482217 STAU1O95793 577 aaKnown RBP6.33□□□□□ -1.4
VPS41-212ENST00000482217 IL2RAP01589 272 aa6.33□□□□□ -1.4
VPS41-212ENST00000482217 ITGA6P23229 1130 aa6.33□□□□□ -1.4
VPS41-212ENST00000482217 GMPRP36959 345 aa6.33□□□□□ -1.4
VPS41-212ENST00000482217 SMTNP53814 917 aa6.33□□□□□ -1.4
VPS41-212ENST00000482217 EPHA4P54764 986 aa6.33□□□□□ -1.4
VPS41-212ENST00000482217 OCLNQ16625 522 aa6.33□□□□□ -1.4
VPS41-212ENST00000482217 GMCL1Q96IK5 515 aa6.33□□□□□ -1.4
VPS41-212ENST00000482217 RAB6BQ9NRW1 208 aa6.33□□□□□ -1.4
VPS41-212ENST00000482217 CXXC1Q9P0U4 656 aaPredicted RBP6.33□□□□□ -1.4
VPS41-212ENST00000482217 SERTAD1Q9UHV2 236 aa6.33□□□□□ -1.4
VPS41-212ENST00000482217 MTMR7Q9Y216 660 aa6.33□□□□□ -1.4
VPS41-212ENST00000482217 A6NJY4 79 aa6.32□□□□□ -1.4
VPS41-212ENST00000482217 PRMT3O60678 531 aa6.32□□□□□ -1.4
VPS41-212ENST00000482217 IGFBP4P22692 258 aa6.32□□□□□ -1.4
VPS41-212ENST00000482217 GTF2E1P29083 439 aaPredicted RBP6.32□□□□□ -1.4
VPS41-212ENST00000482217 PHLDB3Q6NSJ2 640 aa6.32□□□□□ -1.4
VPS41-212ENST00000482217 PRICKLE2Q7Z3G6 844 aa6.32□□□□□ -1.4
VPS41-212ENST00000482217 TNS4Q8IZW8 715 aa6.32□□□□□ -1.4
VPS41-212ENST00000482217 GNEQ9Y223 722 aaKnown RBP6.32□□□□□ -1.4
VPS41-212ENST00000482217 DYRK1BQ9Y463 629 aa6.32□□□□□ -1.4
VPS41-212ENST00000482217 CDK2AP1O14519 115 aa6.31□□□□□ -1.4
VPS41-212ENST00000482217 FOXO3O43524 673 aa6.31□□□□□ -1.4
VPS41-212ENST00000482217 ARID4AP29374 1257 aaPredicted RBP6.31□□□□□ -1.4
VPS41-212ENST00000482217 FOXK2Q01167 660 aa6.31□□□□□ -1.4
VPS41-212ENST00000482217 CENPCQ03188 943 aa6.31□□□□□ -1.4
VPS41-212ENST00000482217 TLR1Q15399 786 aa6.31□□□□□ -1.4
VPS41-212ENST00000482217 TAS1R3Q7RTX0 852 aa6.31□□□□□ -1.4
VPS41-212ENST00000482217 STAG2Q8N3U4 1231 aa6.31□□□□□ -1.4
VPS41-212ENST00000482217 NBPF15Q8N660 670 aa6.31□□□□□ -1.4
VPS41-212ENST00000482217 CCER1Q8TC90 406 aaPredicted RBP6.31□□□□□ -1.4
VPS41-212ENST00000482217 UBE2Q2Q8WVN8 375 aa6.31□□□□□ -1.4
VPS41-212ENST00000482217 FOXD4L4Q8WXT5 416 aaPredicted RBP6.31□□□□□ -1.4
VPS41-212ENST00000482217 PRIMPOLQ96LW4 560 aa6.31□□□□□ -1.4
VPS41-212ENST00000482217 SCHIP1Q9P0W5 487 aaPredicted RBP6.31□□□□□ -1.4
VPS41-212ENST00000482217 ATAD2Q6PL18 1390 aa6.31□□□□□ -1.4
VPS41-212ENST00000482217 NBPF10Q6P3W6 841 aaKnown RBP6.3□□□□□ -1.4
VPS41-212ENST00000482217 TXNDC2Q86VQ3 553 aa6.3□□□□□ -1.4
VPS41-212ENST00000482217 ZSCAN10Q96SZ4 725 aaPredicted RBP6.3□□□□□ -1.4
VPS41-212ENST00000482217 FHDC1Q9C0D6 1143 aaPredicted RBP6.3□□□□□ -1.4
VPS41-212ENST00000482217 STK17AQ9UEE5 414 aa6.3□□□□□ -1.4
VPS41-212ENST00000482217 FAM181BA6NEQ2 426 aa6.29□□□□□ -1.4
VPS41-212ENST00000482217 H7C1W4 665 aa6.29□□□□□ -1.4
VPS41-212ENST00000482217 PTCD1O75127 700 aaKnown RBP6.29□□□□□ -1.4
VPS41-212ENST00000482217 GNASQ5JWF2 1037 aa6.29□□□□□ -1.4
VPS41-212ENST00000482217 SV2AQ7L0J3 742 aa6.29□□□□□ -1.4
VPS41-212ENST00000482217 SLC9A9Q8IVB4 645 aa6.29□□□□□ -1.4
VPS41-212ENST00000482217 SCG3Q8WXD2 468 aaKnown RBP6.29□□□□□ -1.4
VPS41-212ENST00000482217 COL26A1Q96A83 441 aa6.29□□□□□ -1.4
VPS41-212ENST00000482217 TSPAN10Q9H1Z9 355 aaPredicted RBP6.29□□□□□ -1.4
VPS41-212ENST00000482217 IQSEC3Q9UPP2 1182 aaPredicted RBP6.29□□□□□ -1.4
VPS41-212ENST00000482217 C21orf2O43822 256 aa6.28□□□□□ -1.4
VPS41-212ENST00000482217 RHOQP17081 205 aa6.28□□□□□ -1.4
VPS41-212ENST00000482217 BRD2P25440 801 aaKnown RBP6.28□□□□□ -1.4
VPS41-212ENST00000482217 RBM25P49756 843 aaKnown RBP6.28□□□□□ -1.4
VPS41-212ENST00000482217 PSMA6P60900 246 aaKnown RBP6.28□□□□□ -1.4
VPS41-212ENST00000482217 POU4F2Q12837 409 aa6.28□□□□□ -1.4
VPS41-212ENST00000482217 TMEM214Q6NUQ4 689 aaKnown RBP6.28□□□□□ -1.4
VPS41-212ENST00000482217 PPARGC1BQ86YN6 1023 aaKnown RBP6.28□□□□□ -1.4
VPS41-212ENST00000482217 TRIM22Q8IYM9 498 aa6.28□□□□□ -1.4
VPS41-212ENST00000482217 TIMMDC1Q9NPL8 285 aa6.28□□□□□ -1.4
VPS41-212ENST00000482217 CHMP3Q9Y3E7 222 aa6.28□□□□□ -1.4
VPS41-212ENST00000482217 IVNS1ABPQ9Y6Y0 642 aa6.28□□□□□ -1.4
VPS41-212ENST00000482217 A0A1B0GTH6 734 aa6.27□□□□□ -1.41
VPS41-212ENST00000482217 CDC14CA4D256 554 aa6.27□□□□□ -1.41
VPS41-212ENST00000482217 PPP1R12BO60237 982 aaPredicted RBP6.27□□□□□ -1.41
VPS41-212ENST00000482217 LGR5O75473 907 aa6.27□□□□□ -1.41
VPS41-212ENST00000482217 FKBP5Q13451 457 aaPredicted RBP6.27□□□□□ -1.41
VPS41-212ENST00000482217 TEAD4Q15561 434 aa6.27□□□□□ -1.41
VPS41-212ENST00000482217 FOXR1Q6PIV2 292 aa6.27□□□□□ -1.41
VPS41-212ENST00000482217 POTEAQ6S8J7 498 aa6.27□□□□□ -1.41
VPS41-212ENST00000482217 ZSCAN1Q8NBB4 408 aa6.27□□□□□ -1.41
VPS41-212ENST00000482217 RHBDD1Q8TEB9 315 aa6.27□□□□□ -1.41
VPS41-212ENST00000482217 UTP3Q9NQZ2 479 aaKnown RBP eCLIP6.27□□□□□ -1.41
VPS41-212ENST00000482217 F11P03951 625 aa6.26□□□□□ -1.41
VPS41-212ENST00000482217 HIRAP54198 1017 aaPredicted RBP6.26□□□□□ -1.41
VPS41-212ENST00000482217 VWA5B2Q8N398 1253 aa6.26□□□□□ -1.41
VPS41-212ENST00000482217 VTI1AQ96AJ9 217 aa6.26□□□□□ -1.41
VPS41-212ENST00000482217 C2orf49Q9BVC5 232 aaPredicted RBP6.26□□□□□ -1.41
VPS41-212ENST00000482217 NIFKQ9BYG3 293 aaKnown RBP6.26□□□□□ -1.41
VPS41-212ENST00000482217 SERTM1A2A2V5 107 aa6.25□□□□□ -1.41
VPS41-212ENST00000482217 LBRQ14739 615 aaKnown RBP6.25□□□□□ -1.41
VPS41-212ENST00000482217 RIPOR1Q6ZS17 1223 aa6.25□□□□□ -1.41
VPS41-212ENST00000482217 ZNF295-AS1Q8N0V1 137 aa6.25□□□□□ -1.41
VPS41-212ENST00000482217 CHMP7Q8WUX9 453 aaPredicted RBP6.25□□□□□ -1.41
VPS41-212ENST00000482217 ZNF837Q96EG3 531 aaPredicted RBP6.25□□□□□ -1.41
VPS41-212ENST00000482217 COL25A1Q9BXS0 654 aaPredicted RBP6.25□□□□□ -1.41
VPS41-212ENST00000482217 GZF1Q9H116 711 aaPredicted RBP6.25□□□□□ -1.41
VPS41-212ENST00000482217 EGFL7Q9UHF1 273 aa6.25□□□□□ -1.41
VPS41-212ENST00000482217 USP3Q9Y6I4 520 aa6.25□□□□□ -1.41
VPS41-212ENST00000482217 NOS2P35228 1153 aa6.24□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms