RNA–Protein interactions for RNA: ENST00000481019.5

PTPRF-213, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 3

Gene PTPRF, Length 459 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-213ENST00000481019 FLAD1Q8NFF5 587 aa16.11■□□□□ 0.17
PTPRF-213ENST00000481019 SRP68Q9UHB9 627 aaKnown RBP16.1■□□□□ 0.17
PTPRF-213ENST00000481019 USP16Q9Y5T5 823 aa16.1■□□□□ 0.17
PTPRF-213ENST00000481019 SOS1Q07889 1333 aaPredicted RBP16.1■□□□□ 0.17
PTPRF-213ENST00000481019 A1BGP04217 495 aa16.09■□□□□ 0.17
PTPRF-213ENST00000481019 PIP4K2AP48426 406 aaPredicted RBP16.09■□□□□ 0.17
PTPRF-213ENST00000481019 TRAPPC3LQ5T215 181 aa16.09■□□□□ 0.17
PTPRF-213ENST00000481019 PPP1R1BQ9UD71 204 aaPredicted RBP16.09■□□□□ 0.17
PTPRF-213ENST00000481019 HMGB2P26583 209 aaKnown RBP16.08■□□□□ 0.16
PTPRF-213ENST00000481019 CANXP27824 592 aaKnown RBP16.08■□□□□ 0.16
PTPRF-213ENST00000481019 EIF4A1P60842 406 aaKnown RBP16.08■□□□□ 0.16
PTPRF-213ENST00000481019 ARXQ96QS3 562 aa16.08■□□□□ 0.16
PTPRF-213ENST00000481019 GYS1P13807 737 aa16.07■□□□□ 0.16
PTPRF-213ENST00000481019 MIER1Q8N108 512 aa16.07■□□□□ 0.16
PTPRF-213ENST00000481019 FHDC1Q9C0D6 1143 aaPredicted RBP16.07■□□□□ 0.16
PTPRF-213ENST00000481019 ADRA2BP18089 450 aa16.06■□□□□ 0.16
PTPRF-213ENST00000481019 COL15A1P39059 1388 aa16.05■□□□□ 0.16
PTPRF-213ENST00000481019 USP42Q9H9J4 1324 aaKnown RBP16.05■□□□□ 0.16
PTPRF-213ENST00000481019 CCER2I3L3R5 266 aa16.05■□□□□ 0.16
PTPRF-213ENST00000481019 STARD3NLO95772 234 aa16.05■□□□□ 0.16
PTPRF-213ENST00000481019 SNRPA1P09661 255 aaKnown RBP16.05■□□□□ 0.16
PTPRF-213ENST00000481019 RFC4P35249 363 aa16.05■□□□□ 0.16
PTPRF-213ENST00000481019 LMOD3Q0VAK6 560 aa16.05■□□□□ 0.16
PTPRF-213ENST00000481019 KRT24Q2M2I5 525 aa16.05■□□□□ 0.16
PTPRF-213ENST00000481019 TSPYL4Q9UJ04 414 aa16.05■□□□□ 0.16
PTPRF-213ENST00000481019 NBPF26B4DH59 902 aa16.04■□□□□ 0.16
PTPRF-213ENST00000481019 CHL1O00533 1208 aa16.04■□□□□ 0.16
PTPRF-213ENST00000481019 GIGYF1O75420 1035 aaPredicted RBP16.04■□□□□ 0.16
PTPRF-213ENST00000481019 POLD1P28340 1107 aa16.04■□□□□ 0.16
PTPRF-213ENST00000481019 EIF5P55010 431 aaKnown RBP16.04■□□□□ 0.16
PTPRF-213ENST00000481019 FKBP8Q14318 412 aa16.04■□□□□ 0.16
PTPRF-213ENST00000481019 NBPF10Q6P3W6 841 aaKnown RBP16.04■□□□□ 0.16
PTPRF-213ENST00000481019 NBPF15Q8N660 670 aa16.04■□□□□ 0.16
PTPRF-213ENST00000481019 TEX13AQ9BXU3 409 aaPredicted RBP16.04■□□□□ 0.16
PTPRF-213ENST00000481019 BCL2L12Q9HB09 334 aa16.04■□□□□ 0.16
PTPRF-213ENST00000481019 LAMB4A4D0S4 1761 aa16.04■□□□□ 0.16
PTPRF-213ENST00000481019 USPL1Q5W0Q7 1092 aa16.03■□□□□ 0.16
PTPRF-213ENST00000481019 FAM9BQ8IZU0 186 aa16.03■□□□□ 0.16
PTPRF-213ENST00000481019 SYT17Q9BSW7 474 aa16.03■□□□□ 0.16
PTPRF-213ENST00000481019 LAS1LQ9Y4W2 734 aaKnown RBP16.03■□□□□ 0.16
PTPRF-213ENST00000481019 GOLGB1Q14789 3259 aaKnown RBP16.03■□□□□ 0.16
PTPRF-213ENST00000481019 MMP10P09238 476 aa16.02■□□□□ 0.16
PTPRF-213ENST00000481019 NLGN2Q8NFZ4 835 aa16.02■□□□□ 0.16
PTPRF-213ENST00000481019 UTRNP46939 3433 aa16.01■□□□□ 0.15
PTPRF-213ENST00000481019 ZNF853P0CG23 659 aa16.01■□□□□ 0.15
PTPRF-213ENST00000481019 DDR1Q08345 913 aa16.01■□□□□ 0.15
PTPRF-213ENST00000481019 KLHL34Q8N239 644 aa16.01■□□□□ 0.15
PTPRF-213ENST00000481019 ZNF330Q9Y3S2 320 aaPredicted RBP16.01■□□□□ 0.15
PTPRF-213ENST00000481019 IL6STP40189 918 aaPredicted RBP16■□□□□ 0.15
PTPRF-213ENST00000481019 MBIPQ9NS73 344 aa16■□□□□ 0.15
PTPRF-213ENST00000481019 BABAM1Q9NWV8 329 aa16■□□□□ 0.15
PTPRF-213ENST00000481019 NARFQ9UHQ1 456 aa16■□□□□ 0.15
PTPRF-213ENST00000481019 TBC1D2BQ9UPU7 963 aa16■□□□□ 0.15
PTPRF-213ENST00000481019 SALL2Q9Y467 1007 aaPredicted RBP16■□□□□ 0.15
PTPRF-213ENST00000481019 SCN7AQ01118 1682 aa15.99■□□□□ 0.15
PTPRF-213ENST00000481019 NLGN1Q8N2Q7 840 aa15.99■□□□□ 0.15
PTPRF-213ENST00000481019 CAMTA2O94983 1202 aa15.98■□□□□ 0.15
PTPRF-213ENST00000481019 TM4SF1P30408 202 aa15.98■□□□□ 0.15
PTPRF-213ENST00000481019 WWC1Q8IX03 1113 aa15.98■□□□□ 0.15
PTPRF-213ENST00000481019 CFAP44Q96MT7 982 aa15.98■□□□□ 0.15
PTPRF-213ENST00000481019 BCORQ6W2J9 1755 aa15.98■□□□□ 0.15
PTPRF-213ENST00000481019 ZPR1O75312 459 aa15.97■□□□□ 0.15
PTPRF-213ENST00000481019 NFIXQ14938 502 aa15.97■□□□□ 0.15
PTPRF-213ENST00000481019 PDIA6Q15084 440 aa15.97■□□□□ 0.15
PTPRF-213ENST00000481019 PROSER3Q2NL68 480 aa15.97■□□□□ 0.15
PTPRF-213ENST00000481019 NECTIN2Q92692 538 aa15.97■□□□□ 0.15
PTPRF-213ENST00000481019 KIAA1551Q9HCM1 1747 aa15.97■□□□□ 0.15
PTPRF-213ENST00000481019 POLRMTO00411 1230 aaKnown RBP15.96■□□□□ 0.15
PTPRF-213ENST00000481019 ANXA1P04083 346 aa15.96■□□□□ 0.15
PTPRF-213ENST00000481019 EIF2S2P20042 333 aaKnown RBP15.96■□□□□ 0.15
PTPRF-213ENST00000481019 CCDC27Q2M243 656 aa15.96■□□□□ 0.15
PTPRF-213ENST00000481019 LRP10Q7Z4F1 713 aa15.96■□□□□ 0.15
PTPRF-213ENST00000481019 IFT57Q9NWB7 429 aa15.96■□□□□ 0.15
PTPRF-213ENST00000481019 A0A087WZG4 1122 aa15.95■□□□□ 0.14
PTPRF-213ENST00000481019 MYL6BP14649 208 aa15.95■□□□□ 0.14
PTPRF-213ENST00000481019 TBC1D9BQ66K14 1250 aa15.95■□□□□ 0.14
PTPRF-213ENST00000481019 DZIP3Q86Y13 1208 aaKnown RBP15.95■□□□□ 0.14
PTPRF-213ENST00000481019 NGEFQ8N5V2 710 aa15.95■□□□□ 0.14
PTPRF-213ENST00000481019 TSR2Q969E8 191 aaKnown RBP15.95■□□□□ 0.14
PTPRF-213ENST00000481019 AFDNP55196 1824 aaKnown RBP15.95■□□□□ 0.14
PTPRF-213ENST00000481019 KIF13BQ9NQT8 1826 aa15.95■□□□□ 0.14
PTPRF-213ENST00000481019 BICDL1Q6ZP65 573 aa15.94■□□□□ 0.14
PTPRF-213ENST00000481019 TTLL7Q6ZT98 887 aa15.94■□□□□ 0.14
PTPRF-213ENST00000481019 SPINK5Q9NQ38 1064 aaPredicted RBP15.94■□□□□ 0.14
PTPRF-213ENST00000481019 C10orf71Q711Q0 1435 aa15.94■□□□□ 0.14
PTPRF-213ENST00000481019 GNAI1P63096 354 aa15.93■□□□□ 0.14
PTPRF-213ENST00000481019 HLFQ16534 295 aa15.93■□□□□ 0.14
PTPRF-213ENST00000481019 C8orf58Q8NAV2 365 aa15.93■□□□□ 0.14
PTPRF-213ENST00000481019 CD2APQ9Y5K6 639 aa15.93■□□□□ 0.14
PTPRF-213ENST00000481019 PARP3Q9Y6F1 533 aa15.93■□□□□ 0.14
PTPRF-213ENST00000481019 NRXN2Q9P2S2 1712 aa15.93■□□□□ 0.14
PTPRF-213ENST00000481019 ELL2O00472 640 aaPredicted RBP15.92■□□□□ 0.14
PTPRF-213ENST00000481019 DUSP27Q5VZP5 1158 aa15.92■□□□□ 0.14
PTPRF-213ENST00000481019 TSPYL6Q8N831 410 aa15.92■□□□□ 0.14
PTPRF-213ENST00000481019 N4BP2Q86UW6 1770 aaPredicted RBP15.92■□□□□ 0.14
PTPRF-213ENST00000481019 CARMIL3Q8ND23 1372 aa15.91■□□□□ 0.14
PTPRF-213ENST00000481019 NCBP3Q53F19 620 aaKnown RBP15.91■□□□□ 0.14
PTPRF-213ENST00000481019 WWC3Q9ULE0 1092 aa15.91■□□□□ 0.14
PTPRF-213ENST00000481019 PXDNLA1KZ92 1463 aa15.91■□□□□ 0.14
PTPRF-213ENST00000481019 SERPINB2P05120 415 aa15.9■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 70.7 ms