RNA–Protein interactions for RNA: ENST00000478916.5

SYNE1-224, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 7,780 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-224ENST00000478916 CFAP100Q494V2 611 aa10.26□□□□□ -0.77
SYNE1-224ENST00000478916 ANKIB1Q9P2G1 1089 aa10.26□□□□□ -0.77
SYNE1-224ENST00000478916 RPAP2Q8IXW5 612 aaPredicted RBP10.26□□□□□ -0.77
SYNE1-224ENST00000478916 RPGRQ92834 1020 aaKnown RBP10.26□□□□□ -0.77
SYNE1-224ENST00000478916 ZHX3Q9H4I2 956 aa10.26□□□□□ -0.77
SYNE1-224ENST00000478916 URI1O94763 535 aaPredicted RBP10.26□□□□□ -0.77
SYNE1-224ENST00000478916 SPA17Q15506 151 aa10.26□□□□□ -0.77
SYNE1-224ENST00000478916 PPP4R3BQ5MIZ7 849 aa10.26□□□□□ -0.77
SYNE1-224ENST00000478916 BCCIPQ9P287 314 aaKnown RBP eCLIP10.25□□□□□ -0.77
SYNE1-224ENST00000478916 IDH1O75874 414 aaKnown RBP10.25□□□□□ -0.77
SYNE1-224ENST00000478916 TAF7Q15545 349 aaPredicted RBP10.25□□□□□ -0.77
SYNE1-224ENST00000478916 SPECC1LQ69YQ0 1117 aa10.25□□□□□ -0.77
SYNE1-224ENST00000478916 CADPS2Q86UW7 1296 aa10.25□□□□□ -0.77
SYNE1-224ENST00000478916 SMARCC1Q92922 1105 aaPredicted RBP10.25□□□□□ -0.77
SYNE1-224ENST00000478916 ZNF76P36508 570 aa10.25□□□□□ -0.77
SYNE1-224ENST00000478916 TMPOP42166 694 aaKnown RBP10.25□□□□□ -0.77
SYNE1-224ENST00000478916 STK3Q13188 491 aa10.25□□□□□ -0.77
SYNE1-224ENST00000478916 ANKRD18BA2A2Z9 1011 aa10.25□□□□□ -0.77
SYNE1-224ENST00000478916 BCAR3O75815 825 aa10.25□□□□□ -0.77
SYNE1-224ENST00000478916 DUSP27Q5VZP5 1158 aa10.25□□□□□ -0.77
SYNE1-224ENST00000478916 MSH6P52701 1360 aa10.24□□□□□ -0.77
SYNE1-224ENST00000478916 ABCC11Q96J66 1382 aa10.24□□□□□ -0.77
SYNE1-224ENST00000478916 FOXO3O43524 673 aa10.24□□□□□ -0.77
SYNE1-224ENST00000478916 KIF4BQ2VIQ3 1234 aa10.24□□□□□ -0.77
SYNE1-224ENST00000478916 MPRIPQ6WCQ1 1025 aa10.24□□□□□ -0.77
SYNE1-224ENST00000478916 SLF2Q8IX21 1173 aa10.24□□□□□ -0.77
SYNE1-224ENST00000478916 TEX13AQ9BXU3 409 aaPredicted RBP10.24□□□□□ -0.77
SYNE1-224ENST00000478916 BMP2KQ9NSY1 1161 aaPredicted RBP10.24□□□□□ -0.77
SYNE1-224ENST00000478916 MAP4K4O95819 1239 aaPredicted RBP10.24□□□□□ -0.77
SYNE1-224ENST00000478916 TTC21BQ7Z4L5 1316 aa10.24□□□□□ -0.77
SYNE1-224ENST00000478916 SYCE3A1L190 88 aa10.24□□□□□ -0.77
SYNE1-224ENST00000478916 BLOC1S2Q6QNY1 142 aa10.24□□□□□ -0.77
SYNE1-224ENST00000478916 CCDC83Q8IWF9 413 aa10.24□□□□□ -0.77
SYNE1-224ENST00000478916 CRACR2BQ8N4Y2 399 aaPredicted RBP10.24□□□□□ -0.77
SYNE1-224ENST00000478916 ZMYND15Q9H091 742 aa10.24□□□□□ -0.77
SYNE1-224ENST00000478916 NCOA1Q15788 1441 aa10.24□□□□□ -0.77
SYNE1-224ENST00000478916 RAB11FIP3O75154 756 aa10.24□□□□□ -0.77
SYNE1-224ENST00000478916 TNNT1P13805 278 aa10.24□□□□□ -0.77
SYNE1-224ENST00000478916 C6orf163Q5TEZ5 329 aa10.24□□□□□ -0.77
SYNE1-224ENST00000478916 DYNC1I1O14576 645 aa10.24□□□□□ -0.77
SYNE1-224ENST00000478916 NEBLO76041 1014 aa10.24□□□□□ -0.77
SYNE1-224ENST00000478916 CTR9Q6PD62 1173 aa10.24□□□□□ -0.77
SYNE1-224ENST00000478916 DAAM2Q86T65 1068 aa10.24□□□□□ -0.77
SYNE1-224ENST00000478916 CHD1LQ86WJ1 897 aa10.24□□□□□ -0.77
SYNE1-224ENST00000478916 GOPCQ9HD26 462 aa10.24□□□□□ -0.77
SYNE1-224ENST00000478916 ABCF2Q9UG63 623 aa10.24□□□□□ -0.77
SYNE1-224ENST00000478916 USP5P45974 858 aa10.24□□□□□ -0.77
SYNE1-224ENST00000478916 KRT28Q7Z3Y7 464 aa10.24□□□□□ -0.77
SYNE1-224ENST00000478916 ZSCAN31Q96LW9 406 aaPredicted RBP10.24□□□□□ -0.77
SYNE1-224ENST00000478916 CCDC85AQ96PX6 553 aaPredicted RBP10.24□□□□□ -0.77
SYNE1-224ENST00000478916 TNRQ92752 1358 aa10.24□□□□□ -0.77
SYNE1-224ENST00000478916 FEZ1Q99689 392 aa10.23□□□□□ -0.77
SYNE1-224ENST00000478916 SPINK5Q9NQ38 1064 aaPredicted RBP10.23□□□□□ -0.77
SYNE1-224ENST00000478916 UBE4AQ14139 1066 aa10.23□□□□□ -0.77
SYNE1-224ENST00000478916 POTEJP0CG39 1038 aa10.23□□□□□ -0.77
SYNE1-224ENST00000478916 IRX3P78415 501 aaPredicted RBP10.23□□□□□ -0.77
SYNE1-224ENST00000478916 NAIPQ13075 1403 aa10.23□□□□□ -0.77
SYNE1-224ENST00000478916 CCDC97Q96F63 343 aaPredicted RBP10.23□□□□□ -0.77
SYNE1-224ENST00000478916 BMS1Q14692 1282 aaKnown RBP10.23□□□□□ -0.77
SYNE1-224ENST00000478916 TNIP1Q15025 636 aa10.23□□□□□ -0.77
SYNE1-224ENST00000478916 MCM10Q7L590 875 aa10.23□□□□□ -0.77
SYNE1-224ENST00000478916 SLC5A1P13866 664 aa10.23□□□□□ -0.77
SYNE1-224ENST00000478916 PAFAH1B1P43034 410 aa10.23□□□□□ -0.77
SYNE1-224ENST00000478916 SSR1P43307 286 aaKnown RBP10.23□□□□□ -0.77
SYNE1-224ENST00000478916 CEBPAP49715 358 aaPredicted RBP10.23□□□□□ -0.77
SYNE1-224ENST00000478916 IFIT5Q13325 482 aaKnown RBP10.23□□□□□ -0.77
SYNE1-224ENST00000478916 DZIP1Q86YF9 867 aaKnown RBP10.23□□□□□ -0.77
SYNE1-224ENST00000478916 HYPKQ9NX55 129 aa10.23□□□□□ -0.77
SYNE1-224ENST00000478916 FBXO31Q5XUX0 539 aaPredicted RBP10.23□□□□□ -0.77
SYNE1-224ENST00000478916 MYD88Q99836 296 aa10.23□□□□□ -0.77
SYNE1-224ENST00000478916 SEC63Q9UGP8 760 aaKnown RBP10.23□□□□□ -0.77
SYNE1-224ENST00000478916 ABCC5O15440 1437 aa10.23□□□□□ -0.77
SYNE1-224ENST00000478916 A0A087WZG4 1122 aa10.22□□□□□ -0.77
SYNE1-224ENST00000478916 TRIM21P19474 475 aaKnown RBP10.22□□□□□ -0.77
SYNE1-224ENST00000478916 LMAN1P49257 510 aa10.22□□□□□ -0.77
SYNE1-224ENST00000478916 ANAPC15P60006 121 aa10.22□□□□□ -0.77
SYNE1-224ENST00000478916 NME9Q86XW9 330 aa10.22□□□□□ -0.77
SYNE1-224ENST00000478916 NSD2O96028 1365 aa10.22□□□□□ -0.77
SYNE1-224ENST00000478916 POLR3DP05423 398 aaPredicted RBP10.22□□□□□ -0.77
SYNE1-224ENST00000478916 KIF1BPQ96EK5 621 aa10.22□□□□□ -0.77
SYNE1-224ENST00000478916 PDRG1Q9NUG6 133 aa10.22□□□□□ -0.77
SYNE1-224ENST00000478916 TRMT112Q9UI30 125 aaKnown RBP10.22□□□□□ -0.77
SYNE1-224ENST00000478916 NEMFO60524 1076 aa10.22□□□□□ -0.77
SYNE1-224ENST00000478916 CCDC183Q5T5S1 534 aa10.22□□□□□ -0.77
SYNE1-224ENST00000478916 NAA15Q9BXJ9 866 aaKnown RBP10.22□□□□□ -0.77
SYNE1-224ENST00000478916 GSTTP1A0A1W2PQM5 241 aa10.22□□□□□ -0.77
SYNE1-224ENST00000478916 CCDC178Q5BJE1 867 aa10.22□□□□□ -0.77
SYNE1-224ENST00000478916 USHBP1Q8N6Y0 703 aa10.22□□□□□ -0.77
SYNE1-224ENST00000478916 CWC27Q6UX04 472 aaKnown RBP10.21□□□□□ -0.77
SYNE1-224ENST00000478916 TAOK3Q9H2K8 898 aa10.21□□□□□ -0.77
SYNE1-224ENST00000478916 CEP131Q9UPN4 1083 aa10.21□□□□□ -0.77
SYNE1-224ENST00000478916 IVLP07476 585 aa10.21□□□□□ -0.77
SYNE1-224ENST00000478916 MCM5P33992 734 aa10.21□□□□□ -0.77
SYNE1-224ENST00000478916 SPECC1Q5M775 1068 aa10.21□□□□□ -0.77
SYNE1-224ENST00000478916 ANO10Q9NW15 660 aa10.21□□□□□ -0.77
SYNE1-224ENST00000478916 TOM1O60784 492 aa10.21□□□□□ -0.78
SYNE1-224ENST00000478916 HSPA4P34932 840 aa10.21□□□□□ -0.78
SYNE1-224ENST00000478916 IDI1Q13907 227 aa10.21□□□□□ -0.78
SYNE1-224ENST00000478916 TOP1P11387 765 aaKnown RBP10.21□□□□□ -0.78
SYNE1-224ENST00000478916 MAP3K12Q12852 859 aa10.21□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms