RNA–Protein interactions for RNA: ENST00000478451.1

GPNMB-210, Transcript of glycoprotein nmb, humanhuman

TSL 4

Gene GPNMB, Length 862 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-210ENST00000478451 TRIM22Q8IYM9 498 aa7.34□□□□□ -1.23
GPNMB-210ENST00000478451 ZNF837Q96EG3 531 aaPredicted RBP7.34□□□□□ -1.23
GPNMB-210ENST00000478451 TFIP11Q9UBB9 837 aaKnown RBP7.34□□□□□ -1.23
GPNMB-210ENST00000478451 KIAA1024Q9UPX6 916 aa7.34□□□□□ -1.23
GPNMB-210ENST00000478451 MAFBQ9Y5Q3 323 aaPredicted RBP7.34□□□□□ -1.23
GPNMB-210ENST00000478451 A0A1B0GTH6 734 aa7.33□□□□□ -1.24
GPNMB-210ENST00000478451 PALM3A6NDB9 673 aaPredicted RBP7.33□□□□□ -1.24
GPNMB-210ENST00000478451 F11P03951 625 aa7.33□□□□□ -1.24
GPNMB-210ENST00000478451 CLDN10P78369 228 aa7.33□□□□□ -1.24
GPNMB-210ENST00000478451 MTFR1Q15390 333 aa7.33□□□□□ -1.24
GPNMB-210ENST00000478451 SERBP1Q8NC51 408 aaKnown RBP eCLIP7.33□□□□□ -1.24
GPNMB-210ENST00000478451 GMCL1Q96IK5 515 aa7.33□□□□□ -1.24
GPNMB-210ENST00000478451 SLC4A9Q96Q91 983 aa7.33□□□□□ -1.24
GPNMB-210ENST00000478451 PPP1R12CQ9BZL4 782 aa7.33□□□□□ -1.24
GPNMB-210ENST00000478451 ZNF358Q9NW07 568 aa7.33□□□□□ -1.24
GPNMB-210ENST00000478451 MKRN1Q9UHC7 482 aaKnown RBP7.33□□□□□ -1.24
GPNMB-210ENST00000478451 ZNF777Q9ULD5 760 aaPredicted RBP7.33□□□□□ -1.24
GPNMB-210ENST00000478451 A6NJY4 79 aa7.32□□□□□ -1.24
GPNMB-210ENST00000478451 H7C1W4 665 aa7.32□□□□□ -1.24
GPNMB-210ENST00000478451 BACH1O14867 736 aa7.32□□□□□ -1.24
GPNMB-210ENST00000478451 PLA2G4AP47712 749 aa7.32□□□□□ -1.24
GPNMB-210ENST00000478451 OGFOD1Q8N543 542 aa7.32□□□□□ -1.24
GPNMB-210ENST00000478451 TPCN2Q8NHX9 752 aa7.32□□□□□ -1.24
GPNMB-210ENST00000478451 GPAMQ9HCL2 828 aa7.32□□□□□ -1.24
GPNMB-210ENST00000478451 MBIPQ9NS73 344 aa7.32□□□□□ -1.24
GPNMB-210ENST00000478451 DNAAF2Q9NVR5 837 aaKnown RBP7.32□□□□□ -1.24
GPNMB-210ENST00000478451 DBN1Q16643 649 aa7.31□□□□□ -1.24
GPNMB-210ENST00000478451 CCDC102BQ68D86 513 aa7.31□□□□□ -1.24
GPNMB-210ENST00000478451 NIFKQ9BYG3 293 aaKnown RBP7.31□□□□□ -1.24
GPNMB-210ENST00000478451 GOLGA2P5Q9HBQ8 144 aa7.31□□□□□ -1.24
GPNMB-210ENST00000478451 IQSEC3Q9UPP2 1182 aaPredicted RBP7.31□□□□□ -1.24
GPNMB-210ENST00000478451 USP3Q9Y6I4 520 aa7.31□□□□□ -1.24
GPNMB-210ENST00000478451 CDK2AP1O14519 115 aa7.3□□□□□ -1.24
GPNMB-210ENST00000478451 ZBTB7BO15156 539 aaPredicted RBP7.3□□□□□ -1.24
GPNMB-210ENST00000478451 MSX1P28360 303 aa7.3□□□□□ -1.24
GPNMB-210ENST00000478451 LARGE2Q8N3Y3 721 aa7.3□□□□□ -1.24
GPNMB-210ENST00000478451 NUCKS1Q9H1E3 243 aaKnown RBP7.3□□□□□ -1.24
GPNMB-210ENST00000478451 ZMYM1Q5SVZ6 1142 aa7.29□□□□□ -1.24
GPNMB-210ENST00000478451 FOXR1Q6PIV2 292 aa7.29□□□□□ -1.24
GPNMB-210ENST00000478451 ZNF295-AS1Q8N0V1 137 aa7.29□□□□□ -1.24
GPNMB-210ENST00000478451 SIX5Q8N196 739 aa7.29□□□□□ -1.24
GPNMB-210ENST00000478451 GTPBP3Q969Y2 492 aaKnown RBP7.29□□□□□ -1.24
GPNMB-210ENST00000478451 ZNF594Q96JF6 807 aaPredicted RBP7.29□□□□□ -1.24
GPNMB-210ENST00000478451 ZMYND15Q9H091 742 aa7.29□□□□□ -1.24
GPNMB-210ENST00000478451 GPR25O00155 361 aa7.28□□□□□ -1.24
GPNMB-210ENST00000478451 THBS1P07996 1170 aa7.28□□□□□ -1.24
GPNMB-210ENST00000478451 CSB-PGBD3P0DP91 1061 aa7.28□□□□□ -1.24
GPNMB-210ENST00000478451 RASA1P20936 1047 aa7.28□□□□□ -1.24
GPNMB-210ENST00000478451 ITGB7P26010 798 aa7.28□□□□□ -1.24
GPNMB-210ENST00000478451 LMOD1P29536 600 aaPredicted RBP7.28□□□□□ -1.24
GPNMB-210ENST00000478451 EPHA4P54764 986 aa7.28□□□□□ -1.24
GPNMB-210ENST00000478451 ERICH6Q7L0X2 663 aa7.28□□□□□ -1.24
GPNMB-210ENST00000478451 PGBD3Q8N328 593 aa7.28□□□□□ -1.24
GPNMB-210ENST00000478451 KRTAP4-7Q9BYR0 210 aa7.28□□□□□ -1.24
GPNMB-210ENST00000478451 RUBCNLQ9H714 662 aa7.28□□□□□ -1.24
GPNMB-210ENST00000478451 CABP1Q9NZU7 370 aa7.28□□□□□ -1.24
GPNMB-210ENST00000478451 SCHIP1Q9P0W5 487 aaPredicted RBP7.28□□□□□ -1.24
GPNMB-210ENST00000478451 ATP4AP20648 1035 aa7.27□□□□□ -1.25
GPNMB-210ENST00000478451 LBRQ14739 615 aaKnown RBP7.27□□□□□ -1.25
GPNMB-210ENST00000478451 CFAP70Q5T0N1 1121 aa7.27□□□□□ -1.25
GPNMB-210ENST00000478451 TNS4Q8IZW8 715 aa7.27□□□□□ -1.25
GPNMB-210ENST00000478451 TRERF1Q96PN7 1200 aa7.27□□□□□ -1.25
GPNMB-210ENST00000478451 RBM19Q9Y4C8 960 aaKnown RBP7.27□□□□□ -1.25
GPNMB-210ENST00000478451 IGF1RP08069 1367 aa7.27□□□□□ -1.25
GPNMB-210ENST00000478451 SFI1A8K8P3 1242 aa7.26□□□□□ -1.25
GPNMB-210ENST00000478451 M0R2N6 131 aa7.26□□□□□ -1.25
GPNMB-210ENST00000478451 DKK1O94907 266 aa7.26□□□□□ -1.25
GPNMB-210ENST00000478451 NBPF1Q3BBV0 1214 aa7.26□□□□□ -1.25
GPNMB-210ENST00000478451 KANK4Q5T7N3 995 aaPredicted RBP7.26□□□□□ -1.25
GPNMB-210ENST00000478451 LARP1Q6PKG0 1096 aaKnown RBP7.26□□□□□ -1.25
GPNMB-210ENST00000478451 SLC9A9Q8IVB4 645 aa7.26□□□□□ -1.25
GPNMB-210ENST00000478451 C1orf216Q8TAB5 229 aa7.26□□□□□ -1.25
GPNMB-210ENST00000478451 AIDAQ96BJ3 306 aa7.26□□□□□ -1.25
GPNMB-210ENST00000478451 USP17L15C9J2P7 530 aa7.25□□□□□ -1.25
GPNMB-210ENST00000478451 USP17L10C9JJH3 530 aa7.25□□□□□ -1.25
GPNMB-210ENST00000478451 USP17L13C9JLJ4 530 aa7.25□□□□□ -1.25
GPNMB-210ENST00000478451 USP17L12C9JPN9 530 aa7.25□□□□□ -1.25
GPNMB-210ENST00000478451 USP17L11C9JVI0 530 aa7.25□□□□□ -1.25
GPNMB-210ENST00000478451 USP17L21D6R901 530 aa7.25□□□□□ -1.25
GPNMB-210ENST00000478451 USP17L18D6R9N7 530 aa7.25□□□□□ -1.25
GPNMB-210ENST00000478451 USP17L22D6RA61 530 aa7.25□□□□□ -1.25
GPNMB-210ENST00000478451 USP17L17D6RBQ6 530 aa7.25□□□□□ -1.25
GPNMB-210ENST00000478451 USP17L19D6RCP7 530 aa7.25□□□□□ -1.25
GPNMB-210ENST00000478451 USP17L20D6RJB6 530 aa7.25□□□□□ -1.25
GPNMB-210ENST00000478451 USP17L24Q0WX57 530 aa7.25□□□□□ -1.25
GPNMB-210ENST00000478451 CRTC2Q53ET0 693 aaPredicted RBP7.25□□□□□ -1.25
GPNMB-210ENST00000478451 EFHC2Q5JST6 749 aa7.25□□□□□ -1.25
GPNMB-210ENST00000478451 TBCELQ5QJ74 424 aa7.25□□□□□ -1.25
GPNMB-210ENST00000478451 ZDHHC1Q8WTX9 485 aa7.25□□□□□ -1.25
GPNMB-210ENST00000478451 ACDQ96AP0 544 aa7.25□□□□□ -1.25
GPNMB-210ENST00000478451 CRISPLD1Q9H336 500 aa7.25□□□□□ -1.25
GPNMB-210ENST00000478451 MKL2Q9ULH7 1088 aa7.25□□□□□ -1.25
GPNMB-210ENST00000478451 TATP17735 454 aaPredicted RBP7.24□□□□□ -1.25
GPNMB-210ENST00000478451 PTK7Q13308 1070 aa7.24□□□□□ -1.25
GPNMB-210ENST00000478451 TEAD4Q15561 434 aa7.24□□□□□ -1.25
GPNMB-210ENST00000478451 TSEN2Q8NCE0 465 aaKnown RBP7.24□□□□□ -1.25
GPNMB-210ENST00000478451 TSPAN10Q9H1Z9 355 aaPredicted RBP7.24□□□□□ -1.25
GPNMB-210ENST00000478451 VRTNQ9H8Y1 702 aa7.24□□□□□ -1.25
GPNMB-210ENST00000478451 ZDHHC3Q9NYG2 299 aa7.24□□□□□ -1.25
GPNMB-210ENST00000478451 PARP3Q9Y6F1 533 aa7.24□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms